data_1M83 # _model_server_result.job_id Xg0haQneYWD71DJfCFuH1Q _model_server_result.datetime_utc '2024-11-27 02:17:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1M83 # _exptl.entry_id 1M83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1M83 _cell.length_a 62.133 _cell.length_b 62.133 _cell.length_c 217.807 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 62.133 62.133 108.9035 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1G ATP . A ATP 400 1_555 B MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc2 C O1A ATP . A ATP 400 1_555 B MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 C O1B ATP . A ATP 400 1_555 B MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc4 B MG MG . A MG 500 1_555 G O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1M83 _atom_sites.fract_transf_matrix[1][1] 0.016095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 500 500 MG MG . C 3 ATP A 1 400 400 ATP ATP . D 4 GOL A 1 920 920 GOL GOL . E 4 GOL A 1 930 930 GOL GOL . F 4 GOL A 1 940 940 GOL GOL . G 5 HOH A 1 501 501 HOH HOH . G 5 HOH A 2 502 502 HOH HOH . G 5 HOH A 3 503 503 HOH HOH . G 5 HOH A 4 504 504 HOH HOH . G 5 HOH A 5 505 505 HOH HOH . G 5 HOH A 6 506 506 HOH HOH . G 5 HOH A 7 507 507 HOH HOH . G 5 HOH A 8 508 508 HOH HOH . G 5 HOH A 9 509 509 HOH HOH . G 5 HOH A 10 510 510 HOH HOH . G 5 HOH A 11 511 511 HOH HOH . G 5 HOH A 12 512 512 HOH HOH . G 5 HOH A 13 513 513 HOH HOH . G 5 HOH A 14 514 514 HOH HOH . G 5 HOH A 15 515 515 HOH HOH . G 5 HOH A 16 516 516 HOH HOH . G 5 HOH A 17 517 517 HOH HOH . G 5 HOH A 18 518 518 HOH HOH . G 5 HOH A 19 519 519 HOH HOH . G 5 HOH A 20 520 520 HOH HOH . G 5 HOH A 21 521 521 HOH HOH . G 5 HOH A 22 522 522 HOH HOH . G 5 HOH A 23 523 523 HOH HOH . G 5 HOH A 24 524 524 HOH HOH . G 5 HOH A 25 525 525 HOH HOH . G 5 HOH A 26 526 526 HOH HOH . G 5 HOH A 27 527 527 HOH HOH . G 5 HOH A 28 528 528 HOH HOH . G 5 HOH A 29 529 529 HOH HOH . G 5 HOH A 30 530 530 HOH HOH . G 5 HOH A 31 531 531 HOH HOH . G 5 HOH A 32 532 532 HOH HOH . G 5 HOH A 33 533 533 HOH HOH . G 5 HOH A 34 534 534 HOH HOH . G 5 HOH A 35 535 535 HOH HOH . G 5 HOH A 36 536 536 HOH HOH . G 5 HOH A 37 537 537 HOH HOH . G 5 HOH A 38 538 538 HOH HOH . G 5 HOH A 39 539 539 HOH HOH . G 5 HOH A 40 540 540 HOH HOH . G 5 HOH A 41 541 541 HOH HOH . G 5 HOH A 42 542 542 HOH HOH . G 5 HOH A 43 543 543 HOH HOH . G 5 HOH A 44 544 544 HOH HOH . G 5 HOH A 45 545 545 HOH HOH . G 5 HOH A 46 546 546 HOH HOH . G 5 HOH A 47 547 547 HOH HOH . G 5 HOH A 48 548 548 HOH HOH . G 5 HOH A 49 549 549 HOH HOH . G 5 HOH A 50 550 550 HOH HOH . G 5 HOH A 51 551 551 HOH HOH . G 5 HOH A 52 552 552 HOH HOH . G 5 HOH A 53 553 553 HOH HOH . G 5 HOH A 54 554 554 HOH HOH . G 5 HOH A 55 555 555 HOH HOH . G 5 HOH A 56 556 556 HOH HOH . G 5 HOH A 57 557 557 HOH HOH . G 5 HOH A 58 558 558 HOH HOH . G 5 HOH A 59 559 559 HOH HOH . G 5 HOH A 60 560 560 HOH HOH . G 5 HOH A 61 561 561 HOH HOH . G 5 HOH A 62 562 562 HOH HOH . G 5 HOH A 63 563 563 HOH HOH . G 5 HOH A 64 564 564 HOH HOH . G 5 HOH A 65 565 565 HOH HOH . G 5 HOH A 66 566 566 HOH HOH . G 5 HOH A 67 567 567 HOH HOH . G 5 HOH A 68 568 568 HOH HOH . G 5 HOH A 69 569 569 HOH HOH . G 5 HOH A 70 570 570 HOH HOH . G 5 HOH A 71 571 571 HOH HOH . G 5 HOH A 72 572 572 HOH HOH . G 5 HOH A 73 573 573 HOH HOH . G 5 HOH A 74 574 574 HOH HOH . G 5 HOH A 75 575 575 HOH HOH . G 5 HOH A 76 576 576 HOH HOH . G 5 HOH A 77 577 577 HOH HOH . G 5 HOH A 78 578 578 HOH HOH . G 5 HOH A 79 579 579 HOH HOH . G 5 HOH A 80 580 580 HOH HOH . G 5 HOH A 81 581 581 HOH HOH . G 5 HOH A 82 582 582 HOH HOH . G 5 HOH A 83 583 583 HOH HOH . G 5 HOH A 84 584 584 HOH HOH . G 5 HOH A 85 585 585 HOH HOH . G 5 HOH A 86 586 586 HOH HOH . G 5 HOH A 87 587 587 HOH HOH . G 5 HOH A 88 588 588 HOH HOH . G 5 HOH A 89 589 589 HOH HOH . G 5 HOH A 90 590 590 HOH HOH . G 5 HOH A 91 591 591 HOH HOH . G 5 HOH A 92 592 592 HOH HOH . G 5 HOH A 93 593 593 HOH HOH . G 5 HOH A 94 594 594 HOH HOH . G 5 HOH A 95 595 595 HOH HOH . G 5 HOH A 96 596 596 HOH HOH . G 5 HOH A 97 597 597 HOH HOH . G 5 HOH A 98 598 598 HOH HOH . G 5 HOH A 99 599 599 HOH HOH . G 5 HOH A 100 600 600 HOH HOH . G 5 HOH A 101 601 601 HOH HOH . G 5 HOH A 102 602 602 HOH HOH . G 5 HOH A 103 603 603 HOH HOH . G 5 HOH A 104 604 604 HOH HOH . G 5 HOH A 105 605 605 HOH HOH . G 5 HOH A 106 606 606 HOH HOH . G 5 HOH A 107 607 607 HOH HOH . G 5 HOH A 108 608 608 HOH HOH . G 5 HOH A 109 609 609 HOH HOH . G 5 HOH A 110 610 610 HOH HOH . G 5 HOH A 111 611 611 HOH HOH . G 5 HOH A 112 612 612 HOH HOH . G 5 HOH A 113 613 613 HOH HOH . G 5 HOH A 114 614 614 HOH HOH . G 5 HOH A 115 615 615 HOH HOH . G 5 HOH A 116 616 616 HOH HOH . G 5 HOH A 117 617 617 HOH HOH . G 5 HOH A 118 618 618 HOH HOH . G 5 HOH A 119 619 619 HOH HOH . G 5 HOH A 120 620 620 HOH HOH . G 5 HOH A 121 621 621 HOH HOH . G 5 HOH A 122 622 622 HOH HOH . G 5 HOH A 123 623 623 HOH HOH . G 5 HOH A 124 624 624 HOH HOH . G 5 HOH A 125 625 625 HOH HOH . G 5 HOH A 126 626 626 HOH HOH . G 5 HOH A 127 627 627 HOH HOH . G 5 HOH A 128 628 628 HOH HOH . G 5 HOH A 129 629 629 HOH HOH . G 5 HOH A 130 630 630 HOH HOH . G 5 HOH A 131 631 631 HOH HOH . G 5 HOH A 132 632 632 HOH HOH . G 5 HOH A 133 633 633 HOH HOH . G 5 HOH A 134 634 634 HOH HOH . G 5 HOH A 135 635 635 HOH HOH . G 5 HOH A 136 636 636 HOH HOH . G 5 HOH A 137 637 637 HOH HOH . G 5 HOH A 138 638 638 HOH HOH . G 5 HOH A 139 639 639 HOH HOH . G 5 HOH A 140 640 640 HOH HOH . G 5 HOH A 141 641 641 HOH HOH . G 5 HOH A 142 642 642 HOH HOH . G 5 HOH A 143 643 643 HOH HOH . G 5 HOH A 144 644 644 HOH HOH . G 5 HOH A 145 645 645 HOH HOH . G 5 HOH A 146 646 646 HOH HOH . G 5 HOH A 147 647 647 HOH HOH . G 5 HOH A 148 648 648 HOH HOH . G 5 HOH A 149 649 649 HOH HOH . G 5 HOH A 150 650 650 HOH HOH . G 5 HOH A 151 651 651 HOH HOH . G 5 HOH A 152 652 652 HOH HOH . G 5 HOH A 153 653 653 HOH HOH . G 5 HOH A 154 654 654 HOH HOH . G 5 HOH A 155 655 655 HOH HOH . G 5 HOH A 156 656 656 HOH HOH . G 5 HOH A 157 657 657 HOH HOH . G 5 HOH A 158 658 658 HOH HOH . G 5 HOH A 159 659 659 HOH HOH . G 5 HOH A 160 660 660 HOH HOH . G 5 HOH A 161 661 661 HOH HOH . G 5 HOH A 162 662 662 HOH HOH . G 5 HOH A 163 663 663 HOH HOH . G 5 HOH A 164 664 664 HOH HOH . G 5 HOH A 165 665 665 HOH HOH . G 5 HOH A 166 666 666 HOH HOH . G 5 HOH A 167 667 667 HOH HOH . G 5 HOH A 168 668 668 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 48.244 21.596 35.8 1 22.62 ? PG ATP 400 A 1 HETATM 2 O O1G ATP . . . C 3 48.105 22.186 37.157 1 22.6 ? O1G ATP 400 A 1 HETATM 3 O O2G ATP . . . C 3 47.931 20.159 35.895 1 21.75 ? O2G ATP 400 A 1 HETATM 4 O O3G ATP . . . C 3 47.356 22.291 34.825 1 22.53 ? O3G ATP 400 A 1 HETATM 5 P PB ATP . . . C 3 50.666 23.044 35.013 1 22.08 ? PB ATP 400 A 1 HETATM 6 O O1B ATP . . . C 3 50.243 24.338 35.596 1 21.19 ? O1B ATP 400 A 1 HETATM 7 O O2B ATP . . . C 3 50.753 23.219 33.554 1 22.82 ? O2B ATP 400 A 1 HETATM 8 O O3B ATP . . . C 3 49.753 21.792 35.301 1 22.4 ? O3B ATP 400 A 1 HETATM 9 P PA ATP . . . C 3 52.668 22.236 37.062 1 22.72 ? PA ATP 400 A 1 HETATM 10 O O1A ATP . . . C 3 51.638 22.711 38.008 1 22.75 ? O1A ATP 400 A 1 HETATM 11 O O2A ATP . . . C 3 53.018 20.819 37.09 1 22.97 ? O2A ATP 400 A 1 HETATM 12 O O3A ATP . . . C 3 52.123 22.648 35.588 1 23.06 ? O3A ATP 400 A 1 HETATM 13 O O5' ATP . . . C 3 53.957 23.088 37.304 1 22.73 ? O5' ATP 400 A 1 HETATM 14 C C5' ATP . . . C 3 55.305 22.73 36.824 1 22.19 ? C5' ATP 400 A 1 HETATM 15 C C4' ATP . . . C 3 56.122 23.946 36.705 1 21.75 ? C4' ATP 400 A 1 HETATM 16 O O4' ATP . . . C 3 55.762 24.755 35.566 1 21.91 ? O4' ATP 400 A 1 HETATM 17 C C3' ATP . . . C 3 56.194 24.946 37.882 1 21.31 ? C3' ATP 400 A 1 HETATM 18 O O3' ATP . . . C 3 57.538 25.386 38.082 1 20.41 ? O3' ATP 400 A 1 HETATM 19 C C2' ATP . . . C 3 55.269 26.021 37.325 1 21.39 ? C2' ATP 400 A 1 HETATM 20 O O2' ATP . . . C 3 55.219 27.278 37.958 1 21.35 ? O2' ATP 400 A 1 HETATM 21 C C1' ATP . . . C 3 55.705 26.109 35.853 1 21.25 ? C1' ATP 400 A 1 HETATM 22 N N9 ATP . . . C 3 54.612 26.666 34.942 1 20.89 ? N9 ATP 400 A 1 HETATM 23 C C8 ATP . . . C 3 53.309 26.195 34.831 1 20.3 ? C8 ATP 400 A 1 HETATM 24 N N7 ATP . . . C 3 52.569 26.899 33.925 1 19.84 ? N7 ATP 400 A 1 HETATM 25 C C5 ATP . . . C 3 53.449 27.839 33.447 1 19.99 ? C5 ATP 400 A 1 HETATM 26 C C6 ATP . . . C 3 53.262 28.883 32.453 1 19.88 ? C6 ATP 400 A 1 HETATM 27 N N6 ATP . . . C 3 52.13 29.104 31.792 1 19.65 ? N6 ATP 400 A 1 HETATM 28 N N1 ATP . . . C 3 54.376 29.686 32.198 1 19.96 ? N1 ATP 400 A 1 HETATM 29 C C2 ATP . . . C 3 55.624 29.528 32.841 1 20.46 ? C2 ATP 400 A 1 HETATM 30 N N3 ATP . . . C 3 55.785 28.531 33.792 1 20.39 ? N3 ATP 400 A 1 HETATM 31 C C4 ATP . . . C 3 54.716 27.708 34.074 1 20.39 ? C4 ATP 400 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #