data_1M8E # _model_server_result.job_id 7VpQldz2sICXnYR_m69Ciw _model_server_result.datetime_utc '2024-11-06 03:14:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 1M8E # _exptl.entry_id 1M8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M8E _cell.length_a 213.067 _cell.length_b 213.067 _cell.length_c 115.783 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.067 0 57.8915 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 319.6005 184.521435 192.971667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 130 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 B SG CYS 130 B CYS 194 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 147 n y N1 C8A H4B sing 148 n y C2 N2 H4B sing 149 n n C2 N3 H4B sing 150 n y N2 HN21 H4B sing 151 n n N2 HN22 H4B sing 152 n n N3 C4 H4B sing 153 n y N3 HN3 H4B sing 154 n n C4 O4 H4B doub 155 n n C4 C4A H4B sing 156 n y C4A C8A H4B doub 157 n y C4A N5 H4B sing 158 n n C8A N8 H4B sing 159 n n N5 C6 H4B sing 160 n n N5 HN5 H4B sing 161 n n N8 C7 H4B sing 162 n n N8 HN8 H4B sing 163 n n C6 C7 H4B sing 164 n n C6 C9 H4B sing 165 n n C6 H6 H4B sing 166 n n C7 H71 H4B sing 167 n n C7 H72 H4B sing 168 n n C9 O9 H4B sing 169 n n C9 C10 H4B sing 170 n n C9 H9 H4B sing 171 n n O9 HO9 H4B sing 172 n n C10 C11 H4B sing 173 n n C10 O10 H4B sing 174 n n C10 H10 H4B sing 175 n n C11 H111 H4B sing 176 n n C11 H112 H4B sing 177 n n C11 H113 H4B sing 178 n n O10 HO0 H4B sing 179 n n # _atom_sites.entry_id 1M8E _atom_sites.fract_transf_matrix[1][1] 0.004693 _atom_sites.fract_transf_matrix[1][2] 0.00271 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B HBI . E 4 7NI A 1 906 906 7NI 7NI . F 2 HEM B 1 901 901 HEM HEM . G 3 H4B B 1 903 902 H4B HBI . H 4 7NI B 1 907 907 7NI 7NI . I 5 HOH A 1 1003 1003 HOH H2O . I 5 HOH A 2 1005 1005 HOH H2O . I 5 HOH A 3 1008 1008 HOH H2O . I 5 HOH A 4 1010 1010 HOH H2O . I 5 HOH A 5 1015 1015 HOH H2O . I 5 HOH A 6 1016 1016 HOH H2O . I 5 HOH A 7 1017 1017 HOH H2O . I 5 HOH A 8 1018 1018 HOH H2O . I 5 HOH A 9 1030 1030 HOH H2O . I 5 HOH A 10 1035 1035 HOH H2O . I 5 HOH A 11 1036 1036 HOH H2O . I 5 HOH A 12 1038 1038 HOH H2O . I 5 HOH A 13 1056 1056 HOH H2O . I 5 HOH A 14 1057 1057 HOH H2O . I 5 HOH A 15 1058 1058 HOH H2O . I 5 HOH A 16 1061 1061 HOH H2O . I 5 HOH A 17 1062 1062 HOH H2O . I 5 HOH A 18 1065 1065 HOH H2O . I 5 HOH A 19 1069 1069 HOH H2O . I 5 HOH A 20 1070 1070 HOH H2O . I 5 HOH A 21 1075 1075 HOH H2O . I 5 HOH A 22 1077 1077 HOH H2O . I 5 HOH A 23 1082 1082 HOH H2O . I 5 HOH A 24 1086 1086 HOH H2O . I 5 HOH A 25 1088 1088 HOH H2O . I 5 HOH A 26 1089 1089 HOH H2O . I 5 HOH A 27 1091 1091 HOH H2O . I 5 HOH A 28 1094 1094 HOH H2O . I 5 HOH A 29 1098 1098 HOH H2O . I 5 HOH A 30 1099 1099 HOH H2O . I 5 HOH A 31 1102 1102 HOH H2O . I 5 HOH A 32 1104 1104 HOH H2O . I 5 HOH A 33 1112 1112 HOH H2O . I 5 HOH A 34 1113 1113 HOH H2O . I 5 HOH A 35 1114 1114 HOH H2O . I 5 HOH A 36 1116 1116 HOH H2O . I 5 HOH A 37 1120 1120 HOH H2O . I 5 HOH A 38 1124 1124 HOH H2O . I 5 HOH A 39 1126 1126 HOH H2O . I 5 HOH A 40 1130 1130 HOH H2O . I 5 HOH A 41 1304 1304 HOH H2O . I 5 HOH A 42 1308 1308 HOH H2O . I 5 HOH A 43 1311 1311 HOH H2O . I 5 HOH A 44 1312 1312 HOH H2O . I 5 HOH A 45 1313 1313 HOH H2O . I 5 HOH A 46 1314 1314 HOH H2O . I 5 HOH A 47 1315 1315 HOH H2O . I 5 HOH A 48 1316 1316 HOH H2O . I 5 HOH A 49 1317 1317 HOH H2O . I 5 HOH A 50 1318 1318 HOH H2O . I 5 HOH A 51 1319 1319 HOH H2O . I 5 HOH A 52 1328 1328 HOH H2O . I 5 HOH A 53 1334 1334 HOH H2O . I 5 HOH A 54 1336 1336 HOH H2O . I 5 HOH A 55 1338 1338 HOH H2O . I 5 HOH A 56 1339 1339 HOH H2O . I 5 HOH A 57 1340 1340 HOH H2O . I 5 HOH A 58 1341 1341 HOH H2O . I 5 HOH A 59 1342 1342 HOH H2O . I 5 HOH A 60 1343 1343 HOH H2O . I 5 HOH A 61 1344 1344 HOH H2O . I 5 HOH A 62 1347 1347 HOH H2O . I 5 HOH A 63 1348 1348 HOH H2O . I 5 HOH A 64 1349 1349 HOH H2O . I 5 HOH A 65 1350 1350 HOH H2O . J 5 HOH B 1 1000 1000 HOH H2O . J 5 HOH B 2 1001 1001 HOH H2O . J 5 HOH B 3 1006 1006 HOH H2O . J 5 HOH B 4 1009 1009 HOH H2O . J 5 HOH B 5 1012 1012 HOH H2O . J 5 HOH B 6 1014 1014 HOH H2O . J 5 HOH B 7 1019 1019 HOH H2O . J 5 HOH B 8 1020 1020 HOH H2O . J 5 HOH B 9 1022 1022 HOH H2O . J 5 HOH B 10 1023 1023 HOH H2O . J 5 HOH B 11 1025 1025 HOH H2O . J 5 HOH B 12 1026 1026 HOH H2O . J 5 HOH B 13 1027 1027 HOH H2O . J 5 HOH B 14 1028 1028 HOH H2O . J 5 HOH B 15 1029 1029 HOH H2O . J 5 HOH B 16 1031 1031 HOH H2O . J 5 HOH B 17 1032 1032 HOH H2O . J 5 HOH B 18 1033 1033 HOH H2O . J 5 HOH B 19 1034 1034 HOH H2O . J 5 HOH B 20 1040 1040 HOH H2O . J 5 HOH B 21 1042 1042 HOH H2O . J 5 HOH B 22 1043 1043 HOH H2O . J 5 HOH B 23 1045 1045 HOH H2O . J 5 HOH B 24 1047 1047 HOH H2O . J 5 HOH B 25 1048 1048 HOH H2O . J 5 HOH B 26 1049 1049 HOH H2O . J 5 HOH B 27 1050 1050 HOH H2O . J 5 HOH B 28 1051 1051 HOH H2O . J 5 HOH B 29 1052 1052 HOH H2O . J 5 HOH B 30 1053 1053 HOH H2O . J 5 HOH B 31 1060 1060 HOH H2O . J 5 HOH B 32 1063 1063 HOH H2O . J 5 HOH B 33 1064 1064 HOH H2O . J 5 HOH B 34 1066 1066 HOH H2O . J 5 HOH B 35 1067 1067 HOH H2O . J 5 HOH B 36 1068 1068 HOH H2O . J 5 HOH B 37 1071 1071 HOH H2O . J 5 HOH B 38 1072 1072 HOH H2O . J 5 HOH B 39 1073 1073 HOH H2O . J 5 HOH B 40 1074 1074 HOH H2O . J 5 HOH B 41 1078 1078 HOH H2O . J 5 HOH B 42 1080 1080 HOH H2O . J 5 HOH B 43 1083 1083 HOH H2O . J 5 HOH B 44 1084 1084 HOH H2O . J 5 HOH B 45 1087 1087 HOH H2O . J 5 HOH B 46 1090 1090 HOH H2O . J 5 HOH B 47 1092 1092 HOH H2O . J 5 HOH B 48 1093 1093 HOH H2O . J 5 HOH B 49 1095 1095 HOH H2O . J 5 HOH B 50 1096 1096 HOH H2O . J 5 HOH B 51 1097 1097 HOH H2O . J 5 HOH B 52 1101 1101 HOH H2O . J 5 HOH B 53 1103 1103 HOH H2O . J 5 HOH B 54 1105 1105 HOH H2O . J 5 HOH B 55 1106 1106 HOH H2O . J 5 HOH B 56 1107 1107 HOH H2O . J 5 HOH B 57 1109 1109 HOH H2O . J 5 HOH B 58 1110 1110 HOH H2O . J 5 HOH B 59 1115 1115 HOH H2O . J 5 HOH B 60 1117 1117 HOH H2O . J 5 HOH B 61 1118 1118 HOH H2O . J 5 HOH B 62 1122 1122 HOH H2O . J 5 HOH B 63 1128 1128 HOH H2O . J 5 HOH B 64 1129 1129 HOH H2O . J 5 HOH B 65 1133 1133 HOH H2O . J 5 HOH B 66 1134 1134 HOH H2O . J 5 HOH B 67 1135 1135 HOH H2O . J 5 HOH B 68 1138 1138 HOH H2O . J 5 HOH B 69 1139 1139 HOH H2O . J 5 HOH B 70 1141 1141 HOH H2O . J 5 HOH B 71 1142 1142 HOH H2O . J 5 HOH B 72 1146 1146 HOH H2O . J 5 HOH B 73 1147 1147 HOH H2O . J 5 HOH B 74 1148 1148 HOH H2O . J 5 HOH B 75 1149 1149 HOH H2O . J 5 HOH B 76 1150 1150 HOH H2O . J 5 HOH B 77 1152 1152 HOH H2O . J 5 HOH B 78 1154 1154 HOH H2O . J 5 HOH B 79 1156 1156 HOH H2O . J 5 HOH B 80 1158 1158 HOH H2O . J 5 HOH B 81 1162 1162 HOH H2O . J 5 HOH B 82 1163 1163 HOH H2O . J 5 HOH B 83 1166 1166 HOH H2O . J 5 HOH B 84 1167 1167 HOH H2O . J 5 HOH B 85 1172 1172 HOH H2O . J 5 HOH B 86 1173 1173 HOH H2O . J 5 HOH B 87 1305 1305 HOH H2O . J 5 HOH B 88 1306 1306 HOH H2O . J 5 HOH B 89 1307 1307 HOH H2O . J 5 HOH B 90 1309 1309 HOH H2O . J 5 HOH B 91 1320 1320 HOH H2O . J 5 HOH B 92 1322 1322 HOH H2O . J 5 HOH B 93 1323 1323 HOH H2O . J 5 HOH B 94 1324 1324 HOH H2O . J 5 HOH B 95 1325 1325 HOH H2O . J 5 HOH B 96 1326 1326 HOH H2O . J 5 HOH B 97 1327 1327 HOH H2O . J 5 HOH B 98 1330 1330 HOH H2O . J 5 HOH B 99 1331 1331 HOH H2O . J 5 HOH B 100 1332 1332 HOH H2O . J 5 HOH B 101 1333 1333 HOH H2O . J 5 HOH B 102 1335 1335 HOH H2O . J 5 HOH B 103 1337 1337 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 113.088 111.464 32.846 1 67.54 ? N1 H4B 902 A 1 HETATM 2 C C2 H4B . . . D 3 114.352 111.824 33.094 1 68.01 ? C2 H4B 902 A 1 HETATM 3 N N2 H4B . . . D 3 115.098 112.268 32.089 1 67.2 ? N2 H4B 902 A 1 HETATM 4 N N3 H4B . . . D 3 114.864 111.787 34.328 1 67.53 ? N3 H4B 902 A 1 HETATM 5 C C4 H4B . . . D 3 114.118 111.39 35.364 1 67.51 ? C4 H4B 902 A 1 HETATM 6 O O4 H4B . . . D 3 114.509 111.459 36.527 1 66.74 ? O4 H4B 902 A 1 HETATM 7 C C4A H4B . . . D 3 112.823 110.88 35.123 1 67.63 ? C4A H4B 902 A 1 HETATM 8 C C8A H4B . . . D 3 112.376 110.858 33.794 1 67.48 ? C8A H4B 902 A 1 HETATM 9 N N5 H4B . . . D 3 112.056 110.439 36.119 1 67.86 ? N5 H4B 902 A 1 HETATM 10 N N8 H4B . . . D 3 111.24 110.233 33.484 1 66.83 ? N8 H4B 902 A 1 HETATM 11 C C6 H4B . . . D 3 110.841 109.976 35.831 1 66.92 ? C6 H4B 902 A 1 HETATM 12 C C7 H4B . . . D 3 110.384 109.866 34.507 1 66.47 ? C7 H4B 902 A 1 HETATM 13 C C9 H4B . . . D 3 110.026 109.488 37.023 1 66.53 ? C9 H4B 902 A 1 HETATM 14 O O9 H4B . . . D 3 109.555 110.543 37.868 1 69.77 ? O9 H4B 902 A 1 HETATM 15 C C10 H4B . . . D 3 108.854 108.632 36.563 1 65.68 ? C10 H4B 902 A 1 HETATM 16 C C11 H4B . . . D 3 107.981 108.267 37.753 1 64.39 ? C11 H4B 902 A 1 HETATM 17 O O10 H4B . . . D 3 109.357 107.429 35.972 1 66.43 ? O10 H4B 902 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 17 #