data_1M8E # _model_server_result.job_id tR_lxwPGsGF509FMVEnKDg _model_server_result.datetime_utc '2024-11-06 02:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":906}' # _entry.id 1M8E # _exptl.entry_id 1M8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-NITROINDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M8E _cell.length_a 213.067 _cell.length_b 213.067 _cell.length_c 115.783 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.067 0 57.8915 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 319.6005 184.521435 192.971667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 130 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 B SG CYS 130 B CYS 194 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'C7 H5 N3 O2' _chem_comp.formula_weight 163.133 _chem_comp.id 7NI _chem_comp.mon_nstd_flag . _chem_comp.name 7-NITROINDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N2 7NI sing 1 n y N1 C8 7NI sing 2 n y N1 H11 7NI sing 3 n n N2 C3 7NI doub 4 n y C3 C9 7NI sing 5 n y C3 H31 7NI sing 6 n n C4 C5 7NI doub 7 n y C4 C9 7NI sing 8 n y C4 H41 7NI sing 9 n n C5 C6 7NI sing 10 n y C5 H51 7NI sing 11 n n C6 C7 7NI doub 12 n y C6 H61 7NI sing 13 n n C7 C8 7NI sing 14 n y C7 N10 7NI sing 15 n n C8 C9 7NI doub 16 n y N10 O11 7NI doub 17 n n N10 O12 7NI sing 18 n n # _atom_sites.entry_id 1M8E _atom_sites.fract_transf_matrix[1][1] 0.004693 _atom_sites.fract_transf_matrix[1][2] 0.00271 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B HBI . E 4 7NI A 1 906 906 7NI 7NI . F 2 HEM B 1 901 901 HEM HEM . G 3 H4B B 1 903 902 H4B HBI . H 4 7NI B 1 907 907 7NI 7NI . I 5 HOH A 1 1003 1003 HOH H2O . I 5 HOH A 2 1005 1005 HOH H2O . I 5 HOH A 3 1008 1008 HOH H2O . I 5 HOH A 4 1010 1010 HOH H2O . I 5 HOH A 5 1015 1015 HOH H2O . I 5 HOH A 6 1016 1016 HOH H2O . I 5 HOH A 7 1017 1017 HOH H2O . I 5 HOH A 8 1018 1018 HOH H2O . I 5 HOH A 9 1030 1030 HOH H2O . I 5 HOH A 10 1035 1035 HOH H2O . I 5 HOH A 11 1036 1036 HOH H2O . I 5 HOH A 12 1038 1038 HOH H2O . I 5 HOH A 13 1056 1056 HOH H2O . I 5 HOH A 14 1057 1057 HOH H2O . I 5 HOH A 15 1058 1058 HOH H2O . I 5 HOH A 16 1061 1061 HOH H2O . I 5 HOH A 17 1062 1062 HOH H2O . I 5 HOH A 18 1065 1065 HOH H2O . I 5 HOH A 19 1069 1069 HOH H2O . I 5 HOH A 20 1070 1070 HOH H2O . I 5 HOH A 21 1075 1075 HOH H2O . I 5 HOH A 22 1077 1077 HOH H2O . I 5 HOH A 23 1082 1082 HOH H2O . I 5 HOH A 24 1086 1086 HOH H2O . I 5 HOH A 25 1088 1088 HOH H2O . I 5 HOH A 26 1089 1089 HOH H2O . I 5 HOH A 27 1091 1091 HOH H2O . I 5 HOH A 28 1094 1094 HOH H2O . I 5 HOH A 29 1098 1098 HOH H2O . I 5 HOH A 30 1099 1099 HOH H2O . I 5 HOH A 31 1102 1102 HOH H2O . I 5 HOH A 32 1104 1104 HOH H2O . I 5 HOH A 33 1112 1112 HOH H2O . I 5 HOH A 34 1113 1113 HOH H2O . I 5 HOH A 35 1114 1114 HOH H2O . I 5 HOH A 36 1116 1116 HOH H2O . I 5 HOH A 37 1120 1120 HOH H2O . I 5 HOH A 38 1124 1124 HOH H2O . I 5 HOH A 39 1126 1126 HOH H2O . I 5 HOH A 40 1130 1130 HOH H2O . I 5 HOH A 41 1304 1304 HOH H2O . I 5 HOH A 42 1308 1308 HOH H2O . I 5 HOH A 43 1311 1311 HOH H2O . I 5 HOH A 44 1312 1312 HOH H2O . I 5 HOH A 45 1313 1313 HOH H2O . I 5 HOH A 46 1314 1314 HOH H2O . I 5 HOH A 47 1315 1315 HOH H2O . I 5 HOH A 48 1316 1316 HOH H2O . I 5 HOH A 49 1317 1317 HOH H2O . I 5 HOH A 50 1318 1318 HOH H2O . I 5 HOH A 51 1319 1319 HOH H2O . I 5 HOH A 52 1328 1328 HOH H2O . I 5 HOH A 53 1334 1334 HOH H2O . I 5 HOH A 54 1336 1336 HOH H2O . I 5 HOH A 55 1338 1338 HOH H2O . I 5 HOH A 56 1339 1339 HOH H2O . I 5 HOH A 57 1340 1340 HOH H2O . I 5 HOH A 58 1341 1341 HOH H2O . I 5 HOH A 59 1342 1342 HOH H2O . I 5 HOH A 60 1343 1343 HOH H2O . I 5 HOH A 61 1344 1344 HOH H2O . I 5 HOH A 62 1347 1347 HOH H2O . I 5 HOH A 63 1348 1348 HOH H2O . I 5 HOH A 64 1349 1349 HOH H2O . I 5 HOH A 65 1350 1350 HOH H2O . J 5 HOH B 1 1000 1000 HOH H2O . J 5 HOH B 2 1001 1001 HOH H2O . J 5 HOH B 3 1006 1006 HOH H2O . J 5 HOH B 4 1009 1009 HOH H2O . J 5 HOH B 5 1012 1012 HOH H2O . J 5 HOH B 6 1014 1014 HOH H2O . J 5 HOH B 7 1019 1019 HOH H2O . J 5 HOH B 8 1020 1020 HOH H2O . J 5 HOH B 9 1022 1022 HOH H2O . J 5 HOH B 10 1023 1023 HOH H2O . J 5 HOH B 11 1025 1025 HOH H2O . J 5 HOH B 12 1026 1026 HOH H2O . J 5 HOH B 13 1027 1027 HOH H2O . J 5 HOH B 14 1028 1028 HOH H2O . J 5 HOH B 15 1029 1029 HOH H2O . J 5 HOH B 16 1031 1031 HOH H2O . J 5 HOH B 17 1032 1032 HOH H2O . J 5 HOH B 18 1033 1033 HOH H2O . J 5 HOH B 19 1034 1034 HOH H2O . J 5 HOH B 20 1040 1040 HOH H2O . J 5 HOH B 21 1042 1042 HOH H2O . J 5 HOH B 22 1043 1043 HOH H2O . J 5 HOH B 23 1045 1045 HOH H2O . J 5 HOH B 24 1047 1047 HOH H2O . J 5 HOH B 25 1048 1048 HOH H2O . J 5 HOH B 26 1049 1049 HOH H2O . J 5 HOH B 27 1050 1050 HOH H2O . J 5 HOH B 28 1051 1051 HOH H2O . J 5 HOH B 29 1052 1052 HOH H2O . J 5 HOH B 30 1053 1053 HOH H2O . J 5 HOH B 31 1060 1060 HOH H2O . J 5 HOH B 32 1063 1063 HOH H2O . J 5 HOH B 33 1064 1064 HOH H2O . J 5 HOH B 34 1066 1066 HOH H2O . J 5 HOH B 35 1067 1067 HOH H2O . J 5 HOH B 36 1068 1068 HOH H2O . J 5 HOH B 37 1071 1071 HOH H2O . J 5 HOH B 38 1072 1072 HOH H2O . J 5 HOH B 39 1073 1073 HOH H2O . J 5 HOH B 40 1074 1074 HOH H2O . J 5 HOH B 41 1078 1078 HOH H2O . J 5 HOH B 42 1080 1080 HOH H2O . J 5 HOH B 43 1083 1083 HOH H2O . J 5 HOH B 44 1084 1084 HOH H2O . J 5 HOH B 45 1087 1087 HOH H2O . J 5 HOH B 46 1090 1090 HOH H2O . J 5 HOH B 47 1092 1092 HOH H2O . J 5 HOH B 48 1093 1093 HOH H2O . J 5 HOH B 49 1095 1095 HOH H2O . J 5 HOH B 50 1096 1096 HOH H2O . J 5 HOH B 51 1097 1097 HOH H2O . J 5 HOH B 52 1101 1101 HOH H2O . J 5 HOH B 53 1103 1103 HOH H2O . J 5 HOH B 54 1105 1105 HOH H2O . J 5 HOH B 55 1106 1106 HOH H2O . J 5 HOH B 56 1107 1107 HOH H2O . J 5 HOH B 57 1109 1109 HOH H2O . J 5 HOH B 58 1110 1110 HOH H2O . J 5 HOH B 59 1115 1115 HOH H2O . J 5 HOH B 60 1117 1117 HOH H2O . J 5 HOH B 61 1118 1118 HOH H2O . J 5 HOH B 62 1122 1122 HOH H2O . J 5 HOH B 63 1128 1128 HOH H2O . J 5 HOH B 64 1129 1129 HOH H2O . J 5 HOH B 65 1133 1133 HOH H2O . J 5 HOH B 66 1134 1134 HOH H2O . J 5 HOH B 67 1135 1135 HOH H2O . J 5 HOH B 68 1138 1138 HOH H2O . J 5 HOH B 69 1139 1139 HOH H2O . J 5 HOH B 70 1141 1141 HOH H2O . J 5 HOH B 71 1142 1142 HOH H2O . J 5 HOH B 72 1146 1146 HOH H2O . J 5 HOH B 73 1147 1147 HOH H2O . J 5 HOH B 74 1148 1148 HOH H2O . J 5 HOH B 75 1149 1149 HOH H2O . J 5 HOH B 76 1150 1150 HOH H2O . J 5 HOH B 77 1152 1152 HOH H2O . J 5 HOH B 78 1154 1154 HOH H2O . J 5 HOH B 79 1156 1156 HOH H2O . J 5 HOH B 80 1158 1158 HOH H2O . J 5 HOH B 81 1162 1162 HOH H2O . J 5 HOH B 82 1163 1163 HOH H2O . J 5 HOH B 83 1166 1166 HOH H2O . J 5 HOH B 84 1167 1167 HOH H2O . J 5 HOH B 85 1172 1172 HOH H2O . J 5 HOH B 86 1173 1173 HOH H2O . J 5 HOH B 87 1305 1305 HOH H2O . J 5 HOH B 88 1306 1306 HOH H2O . J 5 HOH B 89 1307 1307 HOH H2O . J 5 HOH B 90 1309 1309 HOH H2O . J 5 HOH B 91 1320 1320 HOH H2O . J 5 HOH B 92 1322 1322 HOH H2O . J 5 HOH B 93 1323 1323 HOH H2O . J 5 HOH B 94 1324 1324 HOH H2O . J 5 HOH B 95 1325 1325 HOH H2O . J 5 HOH B 96 1326 1326 HOH H2O . J 5 HOH B 97 1327 1327 HOH H2O . J 5 HOH B 98 1330 1330 HOH H2O . J 5 HOH B 99 1331 1331 HOH H2O . J 5 HOH B 100 1332 1332 HOH H2O . J 5 HOH B 101 1333 1333 HOH H2O . J 5 HOH B 102 1335 1335 HOH H2O . J 5 HOH B 103 1337 1337 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7NI . A . E 4 125.549 115.12 30.418 0.5 38.2 ? N1 7NI 906 A 1 HETATM 2 N N1 7NI . B . E 4 123.699 116.1 30.789 0.5 33.62 ? N1 7NI 906 A 1 HETATM 3 N N2 7NI . A . E 4 126.646 114.356 30.295 0.5 38.43 ? N2 7NI 906 A 1 HETATM 4 N N2 7NI . B . E 4 122.514 116.651 31.122 0.5 33.67 ? N2 7NI 906 A 1 HETATM 5 C C3 7NI . A . E 4 126.468 113.169 30.898 0.5 37.43 ? C3 7NI 906 A 1 HETATM 6 C C3 7NI . B . E 4 121.774 115.817 31.872 0.5 34.29 ? C3 7NI 906 A 1 HETATM 7 C C4 7NI . A . E 4 124.269 112.237 32.22 0.5 34.92 ? C4 7NI 906 A 1 HETATM 8 C C4 7NI . B . E 4 122.417 113.397 32.674 0.5 34.74 ? C4 7NI 906 A 1 HETATM 9 C C5 7NI . A . E 4 122.88 112.665 32.628 0.5 34.52 ? C5 7NI 906 A 1 HETATM 10 C C5 7NI . B . E 4 123.416 112.411 32.639 0.5 34.4 ? C5 7NI 906 A 1 HETATM 11 C C6 7NI . A . E 4 122.446 113.924 32.261 0.5 36.62 ? C6 7NI 906 A 1 HETATM 12 C C6 7NI . B . E 4 124.611 112.646 31.956 0.5 34.26 ? C6 7NI 906 A 1 HETATM 13 C C7 7NI . A . E 4 123.286 114.789 31.523 0.5 37.86 ? C7 7NI 906 A 1 HETATM 14 C C7 7NI . B . E 4 124.787 113.872 31.297 0.5 35.14 ? C7 7NI 906 A 1 HETATM 15 C C8 7NI . A . E 4 124.547 114.462 31.126 0.5 37.2 ? C8 7NI 906 A 1 HETATM 16 C C8 7NI . B . E 4 123.829 114.831 31.32 0.5 34.27 ? C8 7NI 906 A 1 HETATM 17 C C9 7NI . A . E 4 125.119 113.21 31.444 0.5 35.72 ? C9 7NI 906 A 1 HETATM 18 C C9 7NI . B . E 4 122.601 114.609 32.024 0.5 34.47 ? C9 7NI 906 A 1 HETATM 19 N N10 7NI . A . E 4 122.747 116.059 31.196 0.5 39.22 ? N10 7NI 906 A 1 HETATM 20 N N10 7NI . B . E 4 126.034 114.075 30.607 0.5 36.32 ? N10 7NI 906 A 1 HETATM 21 O O11 7NI . A . E 4 121.615 116.315 31.567 0.5 42.7 ? O11 7NI 906 A 1 HETATM 22 O O11 7NI . B . E 4 126.858 113.155 30.648 0.5 38.91 ? O11 7NI 906 A 1 HETATM 23 O O12 7NI . A . E 4 123.484 116.771 30.556 0.5 41.76 ? O12 7NI 906 A 1 HETATM 24 O O12 7NI . B . E 4 126.167 115.169 30.034 0.5 37.07 ? O12 7NI 906 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #