data_1M8G # _model_server_result.job_id UdQjY7cRSGjayH13v7cSVQ _model_server_result.datetime_utc '2024-10-19 03:50:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1339}' # _entry.id 1M8G # _exptl.entry_id 1M8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M8G _cell.length_a 88.782 _cell.length_b 88.782 _cell.length_c 109.852 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 88.782 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 44.391 76.887467 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.391 76.887467 54.926 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 88.782 0 54.926 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 54.926 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1M8G _atom_sites.fract_transf_matrix[1][1] 0.011264 _atom_sites.fract_transf_matrix[1][2] 0.006503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 1339 1339 NAD NAD . C 3 HOH A 1 1340 1340 HOH TIP . C 3 HOH A 2 1341 1341 HOH TIP . C 3 HOH A 3 1342 1342 HOH TIP . C 3 HOH A 4 1343 1343 HOH TIP . C 3 HOH A 5 1344 1344 HOH TIP . C 3 HOH A 6 1345 1345 HOH TIP . C 3 HOH A 7 1346 1346 HOH TIP . C 3 HOH A 8 1347 1347 HOH TIP . C 3 HOH A 9 1348 1348 HOH TIP . C 3 HOH A 10 1349 1349 HOH TIP . C 3 HOH A 11 1350 1350 HOH TIP . C 3 HOH A 12 1351 1351 HOH TIP . C 3 HOH A 13 1352 1352 HOH TIP . C 3 HOH A 14 1353 1353 HOH TIP . C 3 HOH A 15 1354 1354 HOH TIP . C 3 HOH A 16 1355 1355 HOH TIP . C 3 HOH A 17 1356 1356 HOH TIP . C 3 HOH A 18 1357 1357 HOH TIP . C 3 HOH A 19 1358 1358 HOH TIP . C 3 HOH A 20 1359 1359 HOH TIP . C 3 HOH A 21 1360 1360 HOH TIP . C 3 HOH A 22 1361 1361 HOH TIP . C 3 HOH A 23 1362 1362 HOH TIP . C 3 HOH A 24 1363 1363 HOH TIP . C 3 HOH A 25 1364 1364 HOH TIP . C 3 HOH A 26 1365 1365 HOH TIP . C 3 HOH A 27 1366 1366 HOH TIP . C 3 HOH A 28 1367 1367 HOH TIP . C 3 HOH A 29 1368 1368 HOH TIP . C 3 HOH A 30 1369 1369 HOH TIP . C 3 HOH A 31 1370 1370 HOH TIP . C 3 HOH A 32 1371 1371 HOH TIP . C 3 HOH A 33 1372 1372 HOH TIP . C 3 HOH A 34 1373 1373 HOH TIP . C 3 HOH A 35 1374 1374 HOH TIP . C 3 HOH A 36 1375 1375 HOH TIP . C 3 HOH A 37 1376 1376 HOH TIP . C 3 HOH A 38 1377 1377 HOH TIP . C 3 HOH A 39 1378 1378 HOH TIP . C 3 HOH A 40 1379 1379 HOH TIP . C 3 HOH A 41 1380 1380 HOH TIP . C 3 HOH A 42 1381 1381 HOH TIP . C 3 HOH A 43 1382 1382 HOH TIP . C 3 HOH A 44 1383 1383 HOH TIP . C 3 HOH A 45 1384 1384 HOH TIP . C 3 HOH A 46 1385 1385 HOH TIP . C 3 HOH A 47 1386 1386 HOH TIP . C 3 HOH A 48 1387 1387 HOH TIP . C 3 HOH A 49 1388 1388 HOH TIP . C 3 HOH A 50 1389 1389 HOH TIP . C 3 HOH A 51 1390 1390 HOH TIP . C 3 HOH A 52 1391 1391 HOH TIP . C 3 HOH A 53 1392 1392 HOH TIP . C 3 HOH A 54 1393 1393 HOH TIP . C 3 HOH A 55 1394 1394 HOH TIP . C 3 HOH A 56 1395 1395 HOH TIP . C 3 HOH A 57 1396 1396 HOH TIP . C 3 HOH A 58 1397 1397 HOH TIP . C 3 HOH A 59 1398 1398 HOH TIP . C 3 HOH A 60 1399 1399 HOH TIP . C 3 HOH A 61 1400 1400 HOH TIP . C 3 HOH A 62 1401 1401 HOH TIP . C 3 HOH A 63 1402 1402 HOH TIP . C 3 HOH A 64 1403 1403 HOH TIP . C 3 HOH A 65 1404 1404 HOH TIP . C 3 HOH A 66 1405 1405 HOH TIP . C 3 HOH A 67 1406 1406 HOH TIP . C 3 HOH A 68 1407 1407 HOH TIP . C 3 HOH A 69 1408 1408 HOH TIP . C 3 HOH A 70 1409 1409 HOH TIP . C 3 HOH A 71 1410 1410 HOH TIP . C 3 HOH A 72 1411 1411 HOH TIP . C 3 HOH A 73 1412 1412 HOH TIP . C 3 HOH A 74 1413 1413 HOH TIP . C 3 HOH A 75 1414 1414 HOH TIP . C 3 HOH A 76 1415 1415 HOH TIP . C 3 HOH A 77 1416 1416 HOH TIP . C 3 HOH A 78 1417 1417 HOH TIP . C 3 HOH A 79 1418 1418 HOH TIP . C 3 HOH A 80 1419 1419 HOH TIP . C 3 HOH A 81 1420 1420 HOH TIP . C 3 HOH A 82 1421 1421 HOH TIP . C 3 HOH A 83 1422 1422 HOH TIP . C 3 HOH A 84 1423 1423 HOH TIP . C 3 HOH A 85 1424 1424 HOH TIP . C 3 HOH A 86 1425 1425 HOH TIP . C 3 HOH A 87 1426 1426 HOH TIP . C 3 HOH A 88 1427 1427 HOH TIP . C 3 HOH A 89 1428 1428 HOH TIP . C 3 HOH A 90 1429 1429 HOH TIP . C 3 HOH A 91 1430 1430 HOH TIP . C 3 HOH A 92 1431 1431 HOH TIP . C 3 HOH A 93 1432 1432 HOH TIP . C 3 HOH A 94 1433 1433 HOH TIP . C 3 HOH A 95 1434 1434 HOH TIP . C 3 HOH A 96 1435 1435 HOH TIP . C 3 HOH A 97 1436 1436 HOH TIP . C 3 HOH A 98 1437 1437 HOH TIP . C 3 HOH A 99 1438 1438 HOH TIP . C 3 HOH A 100 1439 1439 HOH TIP . C 3 HOH A 101 1440 1440 HOH TIP . C 3 HOH A 102 1441 1441 HOH TIP . C 3 HOH A 103 1442 1442 HOH TIP . C 3 HOH A 104 1443 1443 HOH TIP . C 3 HOH A 105 1444 1444 HOH TIP . C 3 HOH A 106 1445 1445 HOH TIP . C 3 HOH A 107 1446 1446 HOH TIP . C 3 HOH A 108 1447 1447 HOH TIP . C 3 HOH A 109 1448 1448 HOH TIP . C 3 HOH A 110 1449 1449 HOH TIP . C 3 HOH A 111 1450 1450 HOH TIP . C 3 HOH A 112 1451 1451 HOH TIP . C 3 HOH A 113 1452 1452 HOH TIP . C 3 HOH A 114 1453 1453 HOH TIP . C 3 HOH A 115 1454 1454 HOH TIP . C 3 HOH A 116 1455 1455 HOH TIP . C 3 HOH A 117 1456 1456 HOH TIP . C 3 HOH A 118 1457 1457 HOH TIP . C 3 HOH A 119 1458 1458 HOH TIP . C 3 HOH A 120 1459 1459 HOH TIP . C 3 HOH A 121 1460 1460 HOH TIP . C 3 HOH A 122 1461 1461 HOH TIP . C 3 HOH A 123 1462 1462 HOH TIP . C 3 HOH A 124 1463 1463 HOH TIP . C 3 HOH A 125 1464 1464 HOH TIP . C 3 HOH A 126 1465 1465 HOH TIP . C 3 HOH A 127 1466 1466 HOH TIP . C 3 HOH A 128 1467 1467 HOH TIP . C 3 HOH A 129 1468 1468 HOH TIP . C 3 HOH A 130 1469 1469 HOH TIP . C 3 HOH A 131 1470 1470 HOH TIP . C 3 HOH A 132 1471 1471 HOH TIP . C 3 HOH A 133 1472 1472 HOH TIP . C 3 HOH A 134 1473 1473 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 26.705 19.257 44.112 1 30.98 ? PA NAD 1339 A 1 HETATM 2 O O1A NAD . . . B 2 26.655 17.905 43.501 1 27.76 ? O1A NAD 1339 A 1 HETATM 3 O O2A NAD . . . B 2 27.309 19.327 45.463 1 30.44 ? O2A NAD 1339 A 1 HETATM 4 O O5B NAD . . . B 2 25.24 19.905 44.202 1 32.28 ? O5B NAD 1339 A 1 HETATM 5 C C5B NAD . . . B 2 24.355 19.858 43.057 1 36.75 ? C5B NAD 1339 A 1 HETATM 6 C C4B NAD . . . B 2 23.053 20.595 43.355 1 39.91 ? C4B NAD 1339 A 1 HETATM 7 O O4B NAD . . . B 2 22.175 19.622 43.958 1 41.09 ? O4B NAD 1339 A 1 HETATM 8 C C3B NAD . . . B 2 23.134 21.727 44.373 1 41.67 ? C3B NAD 1339 A 1 HETATM 9 O O3B NAD . . . B 2 23.597 22.924 43.748 1 42.61 ? O3B NAD 1339 A 1 HETATM 10 C C2B NAD . . . B 2 21.699 21.738 44.903 1 42.76 ? C2B NAD 1339 A 1 HETATM 11 O O2B NAD . . . B 2 20.823 22.474 44.001 1 43.61 ? O2B NAD 1339 A 1 HETATM 12 C C1B NAD . . . B 2 21.362 20.239 44.93 1 42.56 ? C1B NAD 1339 A 1 HETATM 13 N N9A NAD . . . B 2 21.563 19.523 46.204 1 44.06 ? N9A NAD 1339 A 1 HETATM 14 C C8A NAD . . . B 2 22.725 19.009 46.715 1 44.23 ? C8A NAD 1339 A 1 HETATM 15 N N7A NAD . . . B 2 22.576 18.406 47.897 1 44.55 ? N7A NAD 1339 A 1 HETATM 16 C C5A NAD . . . B 2 21.229 18.539 48.168 1 44.72 ? C5A NAD 1339 A 1 HETATM 17 C C6A NAD . . . B 2 20.452 18.109 49.268 1 45.41 ? C6A NAD 1339 A 1 HETATM 18 N N6A NAD . . . B 2 20.894 17.449 50.327 1 44.83 ? N6A NAD 1339 A 1 HETATM 19 N N1A NAD . . . B 2 19.103 18.398 49.249 1 45.17 ? N1A NAD 1339 A 1 HETATM 20 C C2A NAD . . . B 2 18.614 19.085 48.159 1 45.28 ? C2A NAD 1339 A 1 HETATM 21 N N3A NAD . . . B 2 19.232 19.533 47.085 1 44.71 ? N3A NAD 1339 A 1 HETATM 22 C C4A NAD . . . B 2 20.578 19.223 47.144 1 44.68 ? C4A NAD 1339 A 1 HETATM 23 O O3 NAD . . . B 2 27.462 20.214 43.129 1 31.35 ? O3 NAD 1339 A 1 HETATM 24 P PN NAD . . . B 2 27.6 21.877 43.002 1 31.76 ? PN NAD 1339 A 1 HETATM 25 O O1N NAD . . . B 2 26.274 22.465 43.241 1 33.44 ? O1N NAD 1339 A 1 HETATM 26 O O2N NAD . . . B 2 28.634 22.383 43.934 1 33.32 ? O2N NAD 1339 A 1 HETATM 27 O O5D NAD . . . B 2 27.956 21.953 41.461 1 33.04 ? O5D NAD 1339 A 1 HETATM 28 C C5D NAD . . . B 2 29.176 22.595 41.213 1 32.65 ? C5D NAD 1339 A 1 HETATM 29 C C4D NAD . . . B 2 29.537 22.484 39.782 1 30.68 ? C4D NAD 1339 A 1 HETATM 30 O O4D NAD . . . B 2 29.368 23.793 39.11 1 29.46 ? O4D NAD 1339 A 1 HETATM 31 C C3D NAD . . . B 2 30.984 22.131 39.654 1 29.39 ? C3D NAD 1339 A 1 HETATM 32 O O3D NAD . . . B 2 31.195 21.217 38.596 1 31.89 ? O3D NAD 1339 A 1 HETATM 33 C C2D NAD . . . B 2 31.587 23.499 39.407 1 28.65 ? C2D NAD 1339 A 1 HETATM 34 O O2D NAD . . . B 2 32.905 23.372 38.875 1 30.1 ? O2D NAD 1339 A 1 HETATM 35 C C1D NAD . . . B 2 30.575 24.058 38.441 1 27.15 ? C1D NAD 1339 A 1 HETATM 36 N N1N NAD . . . B 2 30.811 25.481 38.192 1 25.5 ? N1N NAD 1339 A 1 HETATM 37 C C2N NAD . . . B 2 31.803 25.855 37.276 1 23.05 ? C2N NAD 1339 A 1 HETATM 38 C C3N NAD . . . B 2 32.217 27.262 37.089 1 22.89 ? C3N NAD 1339 A 1 HETATM 39 C C7N NAD . . . B 2 33.361 27.488 36.165 1 22.82 ? C7N NAD 1339 A 1 HETATM 40 O O7N NAD . . . B 2 33.971 26.485 35.508 1 23.69 ? O7N NAD 1339 A 1 HETATM 41 N N7N NAD . . . B 2 33.755 28.668 36.003 1 19.47 ? N7N NAD 1339 A 1 HETATM 42 C C4N NAD . . . B 2 31.397 28.352 37.757 1 22.26 ? C4N NAD 1339 A 1 HETATM 43 C C5N NAD . . . B 2 30.317 27.798 38.651 1 24.01 ? C5N NAD 1339 A 1 HETATM 44 C C6N NAD . . . B 2 30.068 26.507 38.859 1 23.65 ? C6N NAD 1339 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #