data_1M8H
#
_model_server_result.job_id            t4RT859qO8YbHfbHB0DV5Q 
_model_server_result.datetime_utc      '2024-11-06 03:05:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1m8h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    1M8H 
#
_exptl.entry_id    1M8H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1M8H 
_cell.length_a            213.652 
_cell.length_b            213.652 
_cell.length_c            114.521 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1M8H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS dimeric 2 author_and_software_defined_assembly 1 
PISA,PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1,2 
B,G,H,I,K 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.652 0 57.2605 
3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 320.478 185.02806 190.868333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 130 A CYS 194 1_555 D FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc2 B SG CYS 130 B CYS 194 1_555 G FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 180 n n 
CHA C4D HEM doub 181 n n 
CHA HHA HEM sing 182 n n 
CHB C4A HEM sing 183 n n 
CHB C1B HEM doub 184 n n 
CHB HHB HEM sing 185 n n 
CHC C4B HEM sing 186 n n 
CHC C1C HEM doub 187 n n 
CHC HHC HEM sing 188 n n 
CHD C4C HEM doub 189 n n 
CHD C1D HEM sing 190 n n 
CHD HHD HEM sing 191 n n 
C1A C2A HEM doub 192 n y 
C1A NA HEM sing 193 n y 
C2A C3A HEM sing 194 n y 
C2A CAA HEM sing 195 n n 
C3A C4A HEM doub 196 n y 
C3A CMA HEM sing 197 n n 
C4A NA HEM sing 198 n y 
CMA HMA HEM sing 199 n n 
CMA HMAA HEM sing 200 n n 
CMA HMAB HEM sing 201 n n 
CAA CBA HEM sing 202 n n 
CAA HAA HEM sing 203 n n 
CAA HAAA HEM sing 204 n n 
CBA CGA HEM sing 205 n n 
CBA HBA HEM sing 206 n n 
CBA HBAA HEM sing 207 n n 
CGA O1A HEM doub 208 n n 
CGA O2A HEM sing 209 n n 
C1B C2B HEM sing 210 n n 
C1B NB HEM sing 211 n n 
C2B C3B HEM doub 212 n n 
C2B CMB HEM sing 213 n n 
C3B C4B HEM sing 214 n n 
C3B CAB HEM sing 215 n n 
C4B NB HEM doub 216 n n 
CMB HMB HEM sing 217 n n 
CMB HMBA HEM sing 218 n n 
CMB HMBB HEM sing 219 n n 
CAB CBB HEM doub 220 n n 
CAB HAB HEM sing 221 n n 
CBB HBB HEM sing 222 n n 
CBB HBBA HEM sing 223 n n 
C1C C2C HEM sing 224 n y 
C1C NC HEM sing 225 n y 
C2C C3C HEM doub 226 n y 
C2C CMC HEM sing 227 n n 
C3C C4C HEM sing 228 n y 
C3C CAC HEM sing 229 n n 
C4C NC HEM sing 230 n y 
CMC HMC HEM sing 231 n n 
CMC HMCA HEM sing 232 n n 
CMC HMCB HEM sing 233 n n 
CAC CBC HEM doub 234 n n 
CAC HAC HEM sing 235 n n 
CBC HBC HEM sing 236 n n 
CBC HBCA HEM sing 237 n n 
C1D C2D HEM sing 238 n n 
C1D ND HEM doub 239 n n 
C2D C3D HEM doub 240 n n 
C2D CMD HEM sing 241 n n 
C3D C4D HEM sing 242 n n 
C3D CAD HEM sing 243 n n 
C4D ND HEM sing 244 n n 
CMD HMD HEM sing 245 n n 
CMD HMDA HEM sing 246 n n 
CMD HMDB HEM sing 247 n n 
CAD CBD HEM sing 248 n n 
CAD HAD HEM sing 249 n n 
CAD HADA HEM sing 250 n n 
CBD CGD HEM sing 251 n n 
CBD HBD HEM sing 252 n n 
CBD HBDA HEM sing 253 n n 
CGD O1D HEM doub 254 n n 
CGD O2D HEM sing 255 n n 
O2A H2A HEM sing 256 n n 
O2D H2D HEM sing 257 n n 
FE NA HEM sing 258 n n 
FE NB HEM sing 259 n n 
FE NC HEM sing 260 n n 
FE ND HEM sing 261 n n 
#
_atom_sites.entry_id                     1M8H 
_atom_sites.fract_transf_matrix[1][1]    0.004681 
_atom_sites.fract_transf_matrix[1][2]    0.002702 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005405 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008732 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 3003 3003 SO4 SO4 . 
D 3 HEM A 1 901 901 HEM HEM . 
E 4 H4B A 1 902 902 H4B HBI . 
F 5 6NI A 1 906 906 6NI 6NI . 
G 3 HEM B 1 901 901 HEM HEM . 
H 4 H4B B 1 903 902 H4B HBI . 
I 5 6NI B 1 907 907 6NI 6NI . 
J 6 HOH A 1 1000 1000 HOH H2O . 
J 6 HOH A 2 1001 1001 HOH H2O . 
J 6 HOH A 3 1002 1002 HOH H2O . 
J 6 HOH A 4 1003 1003 HOH H2O . 
J 6 HOH A 5 1004 1004 HOH H2O . 
J 6 HOH A 6 1005 1005 HOH H2O . 
J 6 HOH A 7 1006 1006 HOH H2O . 
J 6 HOH A 8 1007 1007 HOH H2O . 
J 6 HOH A 9 1008 1008 HOH H2O . 
J 6 HOH A 10 1011 1011 HOH H2O . 
J 6 HOH A 11 1017 1017 HOH H2O . 
J 6 HOH A 12 1018 1018 HOH H2O . 
J 6 HOH A 13 1019 1019 HOH H2O . 
J 6 HOH A 14 1021 1021 HOH H2O . 
J 6 HOH A 15 1023 1023 HOH H2O . 
J 6 HOH A 16 1024 1024 HOH H2O . 
J 6 HOH A 17 1025 1025 HOH H2O . 
J 6 HOH A 18 1027 1027 HOH H2O . 
J 6 HOH A 19 1028 1028 HOH H2O . 
J 6 HOH A 20 1030 1030 HOH H2O . 
J 6 HOH A 21 1032 1032 HOH H2O . 
J 6 HOH A 22 1034 1034 HOH H2O . 
J 6 HOH A 23 1035 1035 HOH H2O . 
J 6 HOH A 24 1038 1038 HOH H2O . 
J 6 HOH A 25 1039 1039 HOH H2O . 
J 6 HOH A 26 1040 1040 HOH H2O . 
J 6 HOH A 27 1042 1042 HOH H2O . 
J 6 HOH A 28 1043 1043 HOH H2O . 
J 6 HOH A 29 1046 1046 HOH H2O . 
J 6 HOH A 30 1047 1047 HOH H2O . 
J 6 HOH A 31 1048 1048 HOH H2O . 
J 6 HOH A 32 1050 1050 HOH H2O . 
J 6 HOH A 33 1052 1052 HOH H2O . 
J 6 HOH A 34 1053 1053 HOH H2O . 
J 6 HOH A 35 1057 1057 HOH H2O . 
J 6 HOH A 36 1058 1058 HOH H2O . 
J 6 HOH A 37 1059 1059 HOH H2O . 
J 6 HOH A 38 1062 1062 HOH H2O . 
J 6 HOH A 39 1064 1064 HOH H2O . 
J 6 HOH A 40 1071 1071 HOH H2O . 
J 6 HOH A 41 1072 1072 HOH H2O . 
J 6 HOH A 42 1073 1073 HOH H2O . 
J 6 HOH A 43 1074 1074 HOH H2O . 
J 6 HOH A 44 1078 1078 HOH H2O . 
J 6 HOH A 45 1081 1081 HOH H2O . 
J 6 HOH A 46 1087 1087 HOH H2O . 
J 6 HOH A 47 1089 1089 HOH H2O . 
J 6 HOH A 48 1091 1091 HOH H2O . 
J 6 HOH A 49 1093 1093 HOH H2O . 
J 6 HOH A 50 1095 1095 HOH H2O . 
K 6 HOH B 1 1009 1009 HOH H2O . 
K 6 HOH B 2 1010 1010 HOH H2O . 
K 6 HOH B 3 1012 1012 HOH H2O . 
K 6 HOH B 4 1013 1013 HOH H2O . 
K 6 HOH B 5 1014 1014 HOH H2O . 
K 6 HOH B 6 1015 1015 HOH H2O . 
K 6 HOH B 7 1016 1016 HOH H2O . 
K 6 HOH B 8 1020 1020 HOH H2O . 
K 6 HOH B 9 1022 1022 HOH H2O . 
K 6 HOH B 10 1026 1026 HOH H2O . 
K 6 HOH B 11 1029 1029 HOH H2O . 
K 6 HOH B 12 1036 1036 HOH H2O . 
K 6 HOH B 13 1037 1037 HOH H2O . 
K 6 HOH B 14 1041 1041 HOH H2O . 
K 6 HOH B 15 1044 1044 HOH H2O . 
K 6 HOH B 16 1049 1049 HOH H2O . 
K 6 HOH B 17 1051 1051 HOH H2O . 
K 6 HOH B 18 1054 1054 HOH H2O . 
K 6 HOH B 19 1055 1055 HOH H2O . 
K 6 HOH B 20 1056 1056 HOH H2O . 
K 6 HOH B 21 1061 1061 HOH H2O . 
K 6 HOH B 22 1063 1063 HOH H2O . 
K 6 HOH B 23 1070 1070 HOH H2O . 
K 6 HOH B 24 1075 1075 HOH H2O . 
K 6 HOH B 25 1076 1076 HOH H2O . 
K 6 HOH B 26 1077 1077 HOH H2O . 
K 6 HOH B 27 1079 1079 HOH H2O . 
K 6 HOH B 28 1080 1080 HOH H2O . 
K 6 HOH B 29 1082 1082 HOH H2O . 
K 6 HOH B 30 1083 1083 HOH H2O . 
K 6 HOH B 31 1084 1084 HOH H2O . 
K 6 HOH B 32 1085 1085 HOH H2O . 
K 6 HOH B 33 1086 1086 HOH H2O . 
K 6 HOH B 34 1088 1088 HOH H2O . 
K 6 HOH B 35 1090 1090 HOH H2O . 
K 6 HOH B 36 1092 1092 HOH H2O . 
K 6 HOH B 37 1094 1094 HOH H2O . 
K 6 HOH B 38 1096 1096 HOH H2O . 
K 6 HOH B 39 1097 1097 HOH H2O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 121.667 110.613 30.318 1 36.75 ? CHA HEM 901 A 1 
HETATM 2 C CHB HEM . . . D 3 122.629 114.556 27.824 1 33.88 ? CHB HEM 901 A 1 
HETATM 3 C CHC HEM . . . D 3 127.006 112.769 27.04 1 30.37 ? CHC HEM 901 A 1 
HETATM 4 C CHD HEM . . . D 3 125.769 108.627 29.08 1 33.4 ? CHD HEM 901 A 1 
HETATM 5 C C1A HEM . . . D 3 121.605 111.868 29.828 1 38.35 ? C1A HEM 901 A 1 
HETATM 6 C C2A HEM . . . D 3 120.458 112.759 30.054 1 39.9 ? C2A HEM 901 A 1 
HETATM 7 C C3A HEM . . . D 3 120.717 113.851 29.293 1 39.31 ? C3A HEM 901 A 1 
HETATM 8 C C4A HEM . . . D 3 122.014 113.643 28.641 1 37.12 ? C4A HEM 901 A 1 
HETATM 9 C CMA HEM . . . D 3 119.825 115.052 29.158 1 40.98 ? CMA HEM 901 A 1 
HETATM 10 C CAA HEM . . . D 3 119.361 112.575 31.045 1 40.22 ? CAA HEM 901 A 1 
HETATM 11 C CBA HEM . . . D 3 119.958 113.123 32.318 1 46.29 ? CBA HEM 901 A 1 
HETATM 12 C CGA HEM . . . D 3 119.018 113.034 33.503 1 51.93 ? CGA HEM 901 A 1 
HETATM 13 O O1A HEM . . . D 3 119.477 112.593 34.576 1 54.9 ? O1A HEM 901 A 1 
HETATM 14 O O2A HEM . . . D 3 117.827 113.41 33.378 1 54.18 ? O2A HEM 901 A 1 
HETATM 15 C C1B HEM . . . D 3 123.879 114.36 27.3 1 32.37 ? C1B HEM 901 A 1 
HETATM 16 C C2B HEM . . . D 3 124.519 115.345 26.539 1 31.53 ? C2B HEM 901 A 1 
HETATM 17 C C3B HEM . . . D 3 125.785 114.925 26.316 1 32.65 ? C3B HEM 901 A 1 
HETATM 18 C C4B HEM . . . D 3 125.876 113.593 26.968 1 32.62 ? C4B HEM 901 A 1 
HETATM 19 C CMB HEM . . . D 3 123.854 116.608 25.989 1 31.94 ? CMB HEM 901 A 1 
HETATM 20 C CAB HEM . . . D 3 126.775 115.723 25.683 1 31.78 ? CAB HEM 901 A 1 
HETATM 21 C CBB HEM . . . D 3 127.985 115.343 25.124 1 32.48 ? CBB HEM 901 A 1 
HETATM 22 C C1C HEM . . . D 3 127.084 111.521 27.604 1 31.92 ? C1C HEM 901 A 1 
HETATM 23 C C2C HEM . . . D 3 128.284 110.643 27.588 1 31.25 ? C2C HEM 901 A 1 
HETATM 24 C C3C HEM . . . D 3 127.903 109.441 28.15 1 30.35 ? C3C HEM 901 A 1 
HETATM 25 C C4C HEM . . . D 3 126.509 109.604 28.478 1 32.34 ? C4C HEM 901 A 1 
HETATM 26 C CMC HEM . . . D 3 129.647 111.077 27.093 1 30.56 ? CMC HEM 901 A 1 
HETATM 27 C CAC HEM . . . D 3 128.613 108.325 28.5 1 28.83 ? CAC HEM 901 A 1 
HETATM 28 C CBC HEM . . . D 3 129.829 107.929 27.98 1 30.11 ? CBC HEM 901 A 1 
HETATM 29 C C1D HEM . . . D 3 124.445 108.744 29.526 1 35.05 ? C1D HEM 901 A 1 
HETATM 30 C C2D HEM . . . D 3 123.743 107.763 30.386 1 33.98 ? C2D HEM 901 A 1 
HETATM 31 C C3D HEM . . . D 3 122.618 108.383 30.751 1 34.44 ? C3D HEM 901 A 1 
HETATM 32 C C4D HEM . . . D 3 122.617 109.686 30.126 1 34.67 ? C4D HEM 901 A 1 
HETATM 33 C CMD HEM . . . D 3 124.181 106.393 30.862 1 32.23 ? CMD HEM 901 A 1 
HETATM 34 C CAD HEM . . . D 3 121.617 107.851 31.709 1 32.66 ? CAD HEM 901 A 1 
HETATM 35 C CBD HEM . . . D 3 121.909 108.31 33.113 1 34.58 ? CBD HEM 901 A 1 
HETATM 36 C CGD HEM . . . D 3 120.875 107.792 34.087 1 39.63 ? CGD HEM 901 A 1 
HETATM 37 O O1D HEM . . . D 3 120.658 108.441 35.137 1 40.43 ? O1D HEM 901 A 1 
HETATM 38 O O2D HEM . . . D 3 120.268 106.73 33.796 1 41.63 ? O2D HEM 901 A 1 
HETATM 39 N NA HEM . . . D 3 122.539 112.409 29.004 1 36.13 ? NA HEM 901 A 1 
HETATM 40 N NB HEM . . . D 3 124.685 113.28 27.534 1 32.39 ? NB HEM 901 A 1 
HETATM 41 N NC HEM . . . D 3 126.035 110.863 28.168 1 31.52 ? NC HEM 901 A 1 
HETATM 42 N ND HEM . . . D 3 123.703 109.879 29.394 1 34.38 ? ND HEM 901 A 1 
HETATM 43 FE FE HEM . . . D 3 124.099 111.389 28.158 1 37.15 ? FE HEM 901 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#