data_1M8I # _model_server_result.job_id jiCW_A_FrCjC_njLGoZrhQ _model_server_result.datetime_utc '2024-11-27 20:19:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 1M8I # _exptl.entry_id 1M8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M8I _cell.length_a 213.962 _cell.length_b 213.962 _cell.length_c 114.524 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.962 0 57.262 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 320.943 185.296527 190.873333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 130 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 B SG CYS 130 B CYS 194 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 180 n n CHA C4D HEM doub 181 n n CHA HHA HEM sing 182 n n CHB C4A HEM sing 183 n n CHB C1B HEM doub 184 n n CHB HHB HEM sing 185 n n CHC C4B HEM sing 186 n n CHC C1C HEM doub 187 n n CHC HHC HEM sing 188 n n CHD C4C HEM doub 189 n n CHD C1D HEM sing 190 n n CHD HHD HEM sing 191 n n C1A C2A HEM doub 192 n y C1A NA HEM sing 193 n y C2A C3A HEM sing 194 n y C2A CAA HEM sing 195 n n C3A C4A HEM doub 196 n y C3A CMA HEM sing 197 n n C4A NA HEM sing 198 n y CMA HMA HEM sing 199 n n CMA HMAA HEM sing 200 n n CMA HMAB HEM sing 201 n n CAA CBA HEM sing 202 n n CAA HAA HEM sing 203 n n CAA HAAA HEM sing 204 n n CBA CGA HEM sing 205 n n CBA HBA HEM sing 206 n n CBA HBAA HEM sing 207 n n CGA O1A HEM doub 208 n n CGA O2A HEM sing 209 n n C1B C2B HEM sing 210 n n C1B NB HEM sing 211 n n C2B C3B HEM doub 212 n n C2B CMB HEM sing 213 n n C3B C4B HEM sing 214 n n C3B CAB HEM sing 215 n n C4B NB HEM doub 216 n n CMB HMB HEM sing 217 n n CMB HMBA HEM sing 218 n n CMB HMBB HEM sing 219 n n CAB CBB HEM doub 220 n n CAB HAB HEM sing 221 n n CBB HBB HEM sing 222 n n CBB HBBA HEM sing 223 n n C1C C2C HEM sing 224 n y C1C NC HEM sing 225 n y C2C C3C HEM doub 226 n y C2C CMC HEM sing 227 n n C3C C4C HEM sing 228 n y C3C CAC HEM sing 229 n n C4C NC HEM sing 230 n y CMC HMC HEM sing 231 n n CMC HMCA HEM sing 232 n n CMC HMCB HEM sing 233 n n CAC CBC HEM doub 234 n n CAC HAC HEM sing 235 n n CBC HBC HEM sing 236 n n CBC HBCA HEM sing 237 n n C1D C2D HEM sing 238 n n C1D ND HEM doub 239 n n C2D C3D HEM doub 240 n n C2D CMD HEM sing 241 n n C3D C4D HEM sing 242 n n C3D CAD HEM sing 243 n n C4D ND HEM sing 244 n n CMD HMD HEM sing 245 n n CMD HMDA HEM sing 246 n n CMD HMDB HEM sing 247 n n CAD CBD HEM sing 248 n n CAD HAD HEM sing 249 n n CAD HADA HEM sing 250 n n CBD CGD HEM sing 251 n n CBD HBD HEM sing 252 n n CBD HBDA HEM sing 253 n n CGD O1D HEM doub 254 n n CGD O2D HEM sing 255 n n O2A H2A HEM sing 256 n n O2D H2D HEM sing 257 n n FE NA HEM sing 258 n n FE NB HEM sing 259 n n FE NC HEM sing 260 n n FE ND HEM sing 261 n n # _atom_sites.entry_id 1M8I _atom_sites.fract_transf_matrix[1][1] 0.004674 _atom_sites.fract_transf_matrix[1][2] 0.002698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B HBI . E 4 5NI A 1 906 906 5NI 5NI . F 2 HEM B 1 901 901 HEM HEM . G 3 H4B B 1 903 902 H4B HBI . H 4 5NI B 1 907 907 5NI 5NI . I 5 HOH A 1 1003 1003 HOH H2O . I 5 HOH A 2 1005 1005 HOH H2O . I 5 HOH A 3 1006 1006 HOH H2O . I 5 HOH A 4 1007 1007 HOH H2O . I 5 HOH A 5 1015 1015 HOH H2O . I 5 HOH A 6 1016 1016 HOH H2O . I 5 HOH A 7 1020 1020 HOH H2O . I 5 HOH A 8 1022 1022 HOH H2O . I 5 HOH A 9 1024 1024 HOH H2O . I 5 HOH A 10 1025 1025 HOH H2O . I 5 HOH A 11 1027 1027 HOH H2O . I 5 HOH A 12 1028 1028 HOH H2O . I 5 HOH A 13 1030 1030 HOH H2O . I 5 HOH A 14 1035 1035 HOH H2O . I 5 HOH A 15 1037 1037 HOH H2O . I 5 HOH A 16 1040 1040 HOH H2O . I 5 HOH A 17 1041 1041 HOH H2O . I 5 HOH A 18 1042 1042 HOH H2O . I 5 HOH A 19 1045 1045 HOH H2O . I 5 HOH A 20 1046 1046 HOH H2O . I 5 HOH A 21 1047 1047 HOH H2O . I 5 HOH A 22 1053 1053 HOH H2O . I 5 HOH A 23 1054 1054 HOH H2O . I 5 HOH A 24 1056 1056 HOH H2O . I 5 HOH A 25 1057 1057 HOH H2O . I 5 HOH A 26 1060 1060 HOH H2O . I 5 HOH A 27 1062 1062 HOH H2O . I 5 HOH A 28 1064 1064 HOH H2O . I 5 HOH A 29 1066 1066 HOH H2O . I 5 HOH A 30 1071 1071 HOH H2O . I 5 HOH A 31 1072 1072 HOH H2O . I 5 HOH A 32 1074 1074 HOH H2O . I 5 HOH A 33 1075 1075 HOH H2O . I 5 HOH A 34 1076 1076 HOH H2O . I 5 HOH A 35 1077 1077 HOH H2O . I 5 HOH A 36 1079 1079 HOH H2O . I 5 HOH A 37 1081 1081 HOH H2O . I 5 HOH A 38 1086 1086 HOH H2O . I 5 HOH A 39 1090 1090 HOH H2O . I 5 HOH A 40 1092 1092 HOH H2O . I 5 HOH A 41 1094 1094 HOH H2O . J 5 HOH B 1 1008 1008 HOH H2O . J 5 HOH B 2 1009 1009 HOH H2O . J 5 HOH B 3 1010 1010 HOH H2O . J 5 HOH B 4 1011 1011 HOH H2O . J 5 HOH B 5 1013 1013 HOH H2O . J 5 HOH B 6 1014 1014 HOH H2O . J 5 HOH B 7 1018 1018 HOH H2O . J 5 HOH B 8 1019 1019 HOH H2O . J 5 HOH B 9 1026 1026 HOH H2O . J 5 HOH B 10 1029 1029 HOH H2O . J 5 HOH B 11 1034 1034 HOH H2O . J 5 HOH B 12 1036 1036 HOH H2O . J 5 HOH B 13 1039 1039 HOH H2O . J 5 HOH B 14 1048 1048 HOH H2O . J 5 HOH B 15 1049 1049 HOH H2O . J 5 HOH B 16 1050 1050 HOH H2O . J 5 HOH B 17 1051 1051 HOH H2O . J 5 HOH B 18 1052 1052 HOH H2O . J 5 HOH B 19 1055 1055 HOH H2O . J 5 HOH B 20 1058 1058 HOH H2O . J 5 HOH B 21 1059 1059 HOH H2O . J 5 HOH B 22 1063 1063 HOH H2O . J 5 HOH B 23 1067 1067 HOH H2O . J 5 HOH B 24 1068 1068 HOH H2O . J 5 HOH B 25 1069 1069 HOH H2O . J 5 HOH B 26 1070 1070 HOH H2O . J 5 HOH B 27 1073 1073 HOH H2O . J 5 HOH B 28 1078 1078 HOH H2O . J 5 HOH B 29 1080 1080 HOH H2O . J 5 HOH B 30 1082 1082 HOH H2O . J 5 HOH B 31 1083 1083 HOH H2O . J 5 HOH B 32 1085 1085 HOH H2O . J 5 HOH B 33 1087 1087 HOH H2O . J 5 HOH B 34 1089 1089 HOH H2O . J 5 HOH B 35 1091 1091 HOH H2O . J 5 HOH B 36 1093 1093 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 121.814 110.762 30.381 1 39.53 ? CHA HEM 901 A 1 HETATM 2 C CHB HEM . . . C 2 122.844 114.664 27.698 1 36.63 ? CHB HEM 901 A 1 HETATM 3 C CHC HEM . . . C 2 127.271 112.903 26.871 1 34.87 ? CHC HEM 901 A 1 HETATM 4 C CHD HEM . . . C 2 125.915 108.735 28.936 1 35.32 ? CHD HEM 901 A 1 HETATM 5 C C1A HEM . . . C 2 121.736 112.025 29.807 1 41.36 ? C1A HEM 901 A 1 HETATM 6 C C2A HEM . . . C 2 120.659 113.018 30.101 1 41.39 ? C2A HEM 901 A 1 HETATM 7 C C3A HEM . . . C 2 120.962 114.099 29.293 1 41.01 ? C3A HEM 901 A 1 HETATM 8 C C4A HEM . . . C 2 122.189 113.787 28.546 1 39.18 ? C4A HEM 901 A 1 HETATM 9 C CMA HEM . . . C 2 120.229 115.425 29.173 1 42.68 ? CMA HEM 901 A 1 HETATM 10 C CAA HEM . . . C 2 119.588 112.894 31.151 1 40.49 ? CAA HEM 901 A 1 HETATM 11 C CBA HEM . . . C 2 120.219 113.215 32.491 1 42.94 ? CBA HEM 901 A 1 HETATM 12 C CGA HEM . . . C 2 119.24 113.132 33.66 1 47.36 ? CGA HEM 901 A 1 HETATM 13 O O1A HEM . . . C 2 119.636 112.653 34.737 1 50.19 ? O1A HEM 901 A 1 HETATM 14 O O2A HEM . . . C 2 118.075 113.557 33.524 1 50.16 ? O2A HEM 901 A 1 HETATM 15 C C1B HEM . . . C 2 124.107 114.487 27.115 1 36.58 ? C1B HEM 901 A 1 HETATM 16 C C2B HEM . . . C 2 124.78 115.495 26.378 1 35.97 ? C2B HEM 901 A 1 HETATM 17 C C3B HEM . . . C 2 126.079 115.081 26.158 1 36.57 ? C3B HEM 901 A 1 HETATM 18 C C4B HEM . . . C 2 126.149 113.741 26.784 1 36.07 ? C4B HEM 901 A 1 HETATM 19 C CMB HEM . . . C 2 124.144 116.832 25.967 1 36.73 ? CMB HEM 901 A 1 HETATM 20 C CAB HEM . . . C 2 127.081 115.922 25.588 1 35.2 ? CAB HEM 901 A 1 HETATM 21 C CBB HEM . . . C 2 128.277 115.604 24.987 1 33.72 ? CBB HEM 901 A 1 HETATM 22 C C1C HEM . . . C 2 127.285 111.634 27.454 1 34.43 ? C1C HEM 901 A 1 HETATM 23 C C2C HEM . . . C 2 128.438 110.753 27.413 1 35.22 ? C2C HEM 901 A 1 HETATM 24 C C3C HEM . . . C 2 128.039 109.526 27.931 1 35.38 ? C3C HEM 901 A 1 HETATM 25 C C4C HEM . . . C 2 126.647 109.708 28.284 1 35.93 ? C4C HEM 901 A 1 HETATM 26 C CMC HEM . . . C 2 129.817 111.22 26.937 1 36.14 ? CMC HEM 901 A 1 HETATM 27 C CAC HEM . . . C 2 128.738 108.372 28.265 1 34.57 ? CAC HEM 901 A 1 HETATM 28 C CBC HEM . . . C 2 130.047 108.105 27.915 1 34.15 ? CBC HEM 901 A 1 HETATM 29 C C1D HEM . . . C 2 124.637 108.876 29.462 1 37.57 ? C1D HEM 901 A 1 HETATM 30 C C2D HEM . . . C 2 123.953 107.911 30.337 1 36.59 ? C2D HEM 901 A 1 HETATM 31 C C3D HEM . . . C 2 122.85 108.502 30.797 1 36.68 ? C3D HEM 901 A 1 HETATM 32 C C4D HEM . . . C 2 122.807 109.822 30.179 1 38.61 ? C4D HEM 901 A 1 HETATM 33 C CMD HEM . . . C 2 124.377 106.496 30.629 1 34.87 ? CMD HEM 901 A 1 HETATM 34 C CAD HEM . . . C 2 121.902 107.941 31.795 1 35.19 ? CAD HEM 901 A 1 HETATM 35 C CBD HEM . . . C 2 122.109 108.396 33.224 1 37.94 ? CBD HEM 901 A 1 HETATM 36 C CGD HEM . . . C 2 120.98 107.931 34.121 1 42.48 ? CGD HEM 901 A 1 HETATM 37 O O1D HEM . . . C 2 120.79 108.472 35.233 1 41.65 ? O1D HEM 901 A 1 HETATM 38 O O2D HEM . . . C 2 120.254 107.012 33.695 1 48.56 ? O2D HEM 901 A 1 HETATM 39 N NA HEM . . . C 2 122.652 112.525 28.887 1 38.36 ? NA HEM 901 A 1 HETATM 40 N NB HEM . . . C 2 124.924 113.412 27.332 1 36.46 ? NB HEM 901 A 1 HETATM 41 N NC HEM . . . C 2 126.219 110.989 28.009 1 34.5 ? NC HEM 901 A 1 HETATM 42 N ND HEM . . . C 2 123.905 110.022 29.369 1 38.31 ? ND HEM 901 A 1 HETATM 43 FE FE HEM . . . C 2 124.305 111.621 28.161 1 36.7 ? FE HEM 901 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #