data_1M8I # _model_server_result.job_id i-sI6S1Xknzbj0QJvprs5Q _model_server_result.datetime_utc '2024-11-24 02:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":906}' # _entry.id 1M8I # _exptl.entry_id 1M8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-NITROINDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M8I _cell.length_a 213.962 _cell.length_b 213.962 _cell.length_c 114.524 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 213.962 0 57.262 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 320.943 185.296527 190.873333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 130 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 B SG CYS 130 B CYS 194 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'C7 H5 N3 O2' _chem_comp.formula_weight 163.133 _chem_comp.id 5NI _chem_comp.mon_nstd_flag . _chem_comp.name 5-NITROINDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 5NI doub 1 n y C6 C5 5NI sing 2 n y C6 H61 5NI sing 3 n n C7 C8 5NI sing 4 n y C7 H71 5NI sing 5 n n C8 C9 5NI doub 6 n y C8 N1 5NI sing 7 n y C9 C4 5NI sing 8 n y C9 C3 5NI sing 9 n y C4 C5 5NI doub 10 n y C4 H41 5NI sing 11 n n C5 N10 5NI sing 12 n n N1 N2 5NI sing 13 n y N1 HN11 5NI sing 14 n n N2 C3 5NI doub 15 n y C3 H31 5NI sing 16 n n N10 O11 5NI sing 17 n n N10 O12 5NI doub 18 n n # _atom_sites.entry_id 1M8I _atom_sites.fract_transf_matrix[1][1] 0.004674 _atom_sites.fract_transf_matrix[1][2] 0.002698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B HBI . E 4 5NI A 1 906 906 5NI 5NI . F 2 HEM B 1 901 901 HEM HEM . G 3 H4B B 1 903 902 H4B HBI . H 4 5NI B 1 907 907 5NI 5NI . I 5 HOH A 1 1003 1003 HOH H2O . I 5 HOH A 2 1005 1005 HOH H2O . I 5 HOH A 3 1006 1006 HOH H2O . I 5 HOH A 4 1007 1007 HOH H2O . I 5 HOH A 5 1015 1015 HOH H2O . I 5 HOH A 6 1016 1016 HOH H2O . I 5 HOH A 7 1020 1020 HOH H2O . I 5 HOH A 8 1022 1022 HOH H2O . I 5 HOH A 9 1024 1024 HOH H2O . I 5 HOH A 10 1025 1025 HOH H2O . I 5 HOH A 11 1027 1027 HOH H2O . I 5 HOH A 12 1028 1028 HOH H2O . I 5 HOH A 13 1030 1030 HOH H2O . I 5 HOH A 14 1035 1035 HOH H2O . I 5 HOH A 15 1037 1037 HOH H2O . I 5 HOH A 16 1040 1040 HOH H2O . I 5 HOH A 17 1041 1041 HOH H2O . I 5 HOH A 18 1042 1042 HOH H2O . I 5 HOH A 19 1045 1045 HOH H2O . I 5 HOH A 20 1046 1046 HOH H2O . I 5 HOH A 21 1047 1047 HOH H2O . I 5 HOH A 22 1053 1053 HOH H2O . I 5 HOH A 23 1054 1054 HOH H2O . I 5 HOH A 24 1056 1056 HOH H2O . I 5 HOH A 25 1057 1057 HOH H2O . I 5 HOH A 26 1060 1060 HOH H2O . I 5 HOH A 27 1062 1062 HOH H2O . I 5 HOH A 28 1064 1064 HOH H2O . I 5 HOH A 29 1066 1066 HOH H2O . I 5 HOH A 30 1071 1071 HOH H2O . I 5 HOH A 31 1072 1072 HOH H2O . I 5 HOH A 32 1074 1074 HOH H2O . I 5 HOH A 33 1075 1075 HOH H2O . I 5 HOH A 34 1076 1076 HOH H2O . I 5 HOH A 35 1077 1077 HOH H2O . I 5 HOH A 36 1079 1079 HOH H2O . I 5 HOH A 37 1081 1081 HOH H2O . I 5 HOH A 38 1086 1086 HOH H2O . I 5 HOH A 39 1090 1090 HOH H2O . I 5 HOH A 40 1092 1092 HOH H2O . I 5 HOH A 41 1094 1094 HOH H2O . J 5 HOH B 1 1008 1008 HOH H2O . J 5 HOH B 2 1009 1009 HOH H2O . J 5 HOH B 3 1010 1010 HOH H2O . J 5 HOH B 4 1011 1011 HOH H2O . J 5 HOH B 5 1013 1013 HOH H2O . J 5 HOH B 6 1014 1014 HOH H2O . J 5 HOH B 7 1018 1018 HOH H2O . J 5 HOH B 8 1019 1019 HOH H2O . J 5 HOH B 9 1026 1026 HOH H2O . J 5 HOH B 10 1029 1029 HOH H2O . J 5 HOH B 11 1034 1034 HOH H2O . J 5 HOH B 12 1036 1036 HOH H2O . J 5 HOH B 13 1039 1039 HOH H2O . J 5 HOH B 14 1048 1048 HOH H2O . J 5 HOH B 15 1049 1049 HOH H2O . J 5 HOH B 16 1050 1050 HOH H2O . J 5 HOH B 17 1051 1051 HOH H2O . J 5 HOH B 18 1052 1052 HOH H2O . J 5 HOH B 19 1055 1055 HOH H2O . J 5 HOH B 20 1058 1058 HOH H2O . J 5 HOH B 21 1059 1059 HOH H2O . J 5 HOH B 22 1063 1063 HOH H2O . J 5 HOH B 23 1067 1067 HOH H2O . J 5 HOH B 24 1068 1068 HOH H2O . J 5 HOH B 25 1069 1069 HOH H2O . J 5 HOH B 26 1070 1070 HOH H2O . J 5 HOH B 27 1073 1073 HOH H2O . J 5 HOH B 28 1078 1078 HOH H2O . J 5 HOH B 29 1080 1080 HOH H2O . J 5 HOH B 30 1082 1082 HOH H2O . J 5 HOH B 31 1083 1083 HOH H2O . J 5 HOH B 32 1085 1085 HOH H2O . J 5 HOH B 33 1087 1087 HOH H2O . J 5 HOH B 34 1089 1089 HOH H2O . J 5 HOH B 35 1091 1091 HOH H2O . J 5 HOH B 36 1093 1093 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 5NI . . . E 4 125.842 114.75 30.133 0.85 66.79 ? C6 5NI 906 A 1 HETATM 2 C C7 5NI . . . E 4 125.1 115.913 29.859 0.85 64.98 ? C7 5NI 906 A 1 HETATM 3 C C8 5NI . . . E 4 124.076 116.275 30.694 0.85 63.13 ? C8 5NI 906 A 1 HETATM 4 C C9 5NI . . . E 4 123.741 115.476 31.855 0.85 63.21 ? C9 5NI 906 A 1 HETATM 5 C C4 5NI . . . E 4 124.464 114.329 32.123 0.85 63.45 ? C4 5NI 906 A 1 HETATM 6 C C5 5NI . . . E 4 125.512 113.976 31.261 0.85 66.38 ? C5 5NI 906 A 1 HETATM 7 N N1 5NI . . . E 4 123.171 117.308 30.745 0.85 62.58 ? N1 5NI 906 A 1 HETATM 8 N N2 5NI . . . E 4 122.35 117.204 31.798 0.85 62.59 ? N2 5NI 906 A 1 HETATM 9 C C3 5NI . . . E 4 122.621 116.122 32.533 0.85 63.81 ? C3 5NI 906 A 1 HETATM 10 N N10 5NI . . . E 4 126.309 112.776 31.538 0.85 68.44 ? N10 5NI 906 A 1 HETATM 11 O O11 5NI . . . E 4 125.71 111.787 31.919 0.85 70.37 ? O11 5NI 906 A 1 HETATM 12 O O12 5NI . . . E 4 127.51 112.863 31.366 0.85 69.74 ? O12 5NI 906 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 12 #