data_1M8K # _model_server_result.job_id wEtY8M_qmzXfp6R-UuZ7KQ _model_server_result.datetime_utc '2024-10-19 01:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2005}' # _entry.id 1M8K # _exptl.entry_id 1M8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M8K _cell.length_a 124.48 _cell.length_b 124.48 _cell.length_c 111.826 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_554 y,x,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -111.826 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1M8K _atom_sites.fract_transf_matrix[1][1] 0.008033 _atom_sites.fract_transf_matrix[1][2] 0.004638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 1759 1759 SO4 SO4 . E 3 NAD A 1 2006 2006 NAD NAD . F 2 SO4 B 1 1761 1761 SO4 SO4 . G 3 NAD B 1 2005 2005 NAD NAD . H 2 SO4 C 1 1760 1760 SO4 SO4 . I 3 NAD C 1 2004 2004 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 3 26.826 23.451 -73.519 1 54.91 ? PA NAD 2005 B 1 HETATM 2 O O1A NAD . . . G 3 26.705 24.933 -73.587 1 57.58 ? O1A NAD 2005 B 1 HETATM 3 O O2A NAD . . . G 3 25.67 22.669 -74.048 1 56.3 ? O2A NAD 2005 B 1 HETATM 4 O O5B NAD . . . G 3 28.151 22.951 -74.273 1 60.09 ? O5B NAD 2005 B 1 HETATM 5 C C5B NAD . . . G 3 28.706 21.651 -73.962 1 56.5 ? C5B NAD 2005 B 1 HETATM 6 C C4B NAD . . . G 3 29.204 20.988 -75.232 1 54.76 ? C4B NAD 2005 B 1 HETATM 7 O O4B NAD . . . G 3 28.217 19.992 -75.546 1 53.39 ? O4B NAD 2005 B 1 HETATM 8 C C3B NAD . . . G 3 29.301 21.895 -76.473 1 56.31 ? C3B NAD 2005 B 1 HETATM 9 O O3B NAD . . . G 3 30.646 21.887 -76.985 1 56.81 ? O3B NAD 2005 B 1 HETATM 10 C C2B NAD . . . G 3 28.197 21.331 -77.389 1 54.52 ? C2B NAD 2005 B 1 HETATM 11 O O2B NAD . . . G 3 28.567 21.472 -78.787 1 58.49 ? O2B NAD 2005 B 1 HETATM 12 C C1B NAD . . . G 3 28.172 19.871 -76.924 1 54.6 ? C1B NAD 2005 B 1 HETATM 13 N N9A NAD . . . G 3 26.977 19.083 -77.242 1 55.34 ? N9A NAD 2005 B 1 HETATM 14 C C8A NAD . . . G 3 25.728 19.201 -76.701 1 55.4 ? C8A NAD 2005 B 1 HETATM 15 N N7A NAD . . . G 3 24.84 18.342 -77.209 1 56.44 ? N7A NAD 2005 B 1 HETATM 16 C C5A NAD . . . G 3 25.566 17.62 -78.14 1 55.01 ? C5A NAD 2005 B 1 HETATM 17 C C6A NAD . . . G 3 25.19 16.57 -79.013 1 52.41 ? C6A NAD 2005 B 1 HETATM 18 N N6A NAD . . . G 3 23.986 16.034 -79.115 1 50.93 ? N6A NAD 2005 B 1 HETATM 19 N N1A NAD . . . G 3 26.161 16.046 -79.845 1 51.41 ? N1A NAD 2005 B 1 HETATM 20 C C2A NAD . . . G 3 27.429 16.581 -79.765 1 50.9 ? C2A NAD 2005 B 1 HETATM 21 N N3A NAD . . . G 3 27.896 17.549 -79.001 1 52.86 ? N3A NAD 2005 B 1 HETATM 22 C C4A NAD . . . G 3 26.889 18.05 -78.183 1 54.63 ? C4A NAD 2005 B 1 HETATM 23 O O3 NAD . . . G 3 27.12 23.062 -72.064 1 57.6 ? O3 NAD 2005 B 1 HETATM 24 P PN NAD . . . G 3 26.185 22.326 -70.937 1 55.7 ? PN NAD 2005 B 1 HETATM 25 O O1N NAD . . . G 3 27.115 21.496 -70.152 1 56.59 ? O1N NAD 2005 B 1 HETATM 26 O O2N NAD . . . G 3 25.093 21.57 -71.628 1 56.55 ? O2N NAD 2005 B 1 HETATM 27 O O5D NAD . . . G 3 25.791 23.654 -70.174 1 59.14 ? O5D NAD 2005 B 1 HETATM 28 C C5D NAD . . . G 3 24.425 24.049 -70.197 1 55.06 ? C5D NAD 2005 B 1 HETATM 29 C C4D NAD . . . G 3 24.299 25.335 -69.436 1 55.32 ? C4D NAD 2005 B 1 HETATM 30 O O4D NAD . . . G 3 23.967 24.978 -68.074 1 54.65 ? O4D NAD 2005 B 1 HETATM 31 C C3D NAD . . . G 3 25.554 26.203 -69.337 1 54.42 ? C3D NAD 2005 B 1 HETATM 32 O O3D NAD . . . G 3 25.302 27.49 -69.892 1 55.11 ? O3D NAD 2005 B 1 HETATM 33 C C2D NAD . . . G 3 25.814 26.266 -67.833 1 54.84 ? C2D NAD 2005 B 1 HETATM 34 O O2D NAD . . . G 3 26.276 27.573 -67.463 1 53.96 ? O2D NAD 2005 B 1 HETATM 35 C C1D NAD . . . G 3 24.464 25.979 -67.26 1 53.23 ? C1D NAD 2005 B 1 HETATM 36 N N1N NAD . . . G 3 24.523 25.556 -65.861 1 51.99 ? N1N NAD 2005 B 1 HETATM 37 C C2N NAD . . . G 3 24.537 26.511 -64.849 1 50.35 ? C2N NAD 2005 B 1 HETATM 38 C C3N NAD . . . G 3 24.563 26.134 -63.417 1 48.04 ? C3N NAD 2005 B 1 HETATM 39 C C7N NAD . . . G 3 24.542 27.239 -62.447 1 48.98 ? C7N NAD 2005 B 1 HETATM 40 O O7N NAD . . . G 3 24.497 28.524 -62.808 1 50.55 ? O7N NAD 2005 B 1 HETATM 41 N N7N NAD . . . G 3 24.559 26.943 -61.249 1 44.51 ? N7N NAD 2005 B 1 HETATM 42 C C4N NAD . . . G 3 24.602 24.668 -63.049 1 49.17 ? C4N NAD 2005 B 1 HETATM 43 C C5N NAD . . . G 3 24.607 23.781 -64.244 1 49.54 ? C5N NAD 2005 B 1 HETATM 44 C C6N NAD . . . G 3 24.566 24.177 -65.502 1 50.67 ? C6N NAD 2005 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #