data_1M8S
#
_model_server_result.job_id            BwmWiNAxlli7snGQwE3LVw 
_model_server_result.datetime_utc      '2025-02-27 01:32:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1m8s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    1M8S 
#
_exptl.entry_id    1M8S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-BUTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1M8S 
_cell.length_a            83.16 
_cell.length_b            83.16 
_cell.length_c            32.78 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1M8S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 116 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 124 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc1 A O TYR 27 A TYR 28 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc2 A O GLY 29 A GLY 30 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc3 A O GLY 31 A GLY 32 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc4 A OD1 ASP 48 A ASP 49 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc5 A OD2 ASP 48 A ASP 49 1_555 B CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BU1 sing 70 n n 
C1 O5 BU1 sing 71 n n 
C1 H11 BU1 sing 72 n n 
C1 H12 BU1 sing 73 n n 
C2 C3 BU1 sing 74 n n 
C2 H21 BU1 sing 75 n n 
C2 H22 BU1 sing 76 n n 
C3 C4 BU1 sing 77 n n 
C3 H31 BU1 sing 78 n n 
C3 H32 BU1 sing 79 n n 
C4 O6 BU1 sing 80 n n 
C4 H41 BU1 sing 81 n n 
C4 H42 BU1 sing 82 n n 
O5 HO5 BU1 sing 83 n n 
O6 HO6 BU1 sing 84 n n 
#
_atom_sites.entry_id                     1M8S 
_atom_sites.fract_transf_matrix[1][1]    0.012025 
_atom_sites.fract_transf_matrix[1][2]    0.006943 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030506 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 1001 1001 CD CD . 
C 3 BU1 A 1 1002 1001 BU1 BU1 . 
D 3 BU1 A 1 1003 1002 BU1 BU1 . 
E 4 HOH A 1 1004 1 HOH HOH . 
E 4 HOH A 2 1005 2 HOH HOH . 
E 4 HOH A 3 1006 3 HOH HOH . 
E 4 HOH A 4 1007 4 HOH HOH . 
E 4 HOH A 5 1008 5 HOH HOH . 
E 4 HOH A 6 1009 6 HOH HOH . 
E 4 HOH A 7 1010 7 HOH HOH . 
E 4 HOH A 8 1011 8 HOH HOH . 
E 4 HOH A 9 1012 9 HOH HOH . 
E 4 HOH A 10 1013 10 HOH HOH . 
E 4 HOH A 11 1014 11 HOH HOH . 
E 4 HOH A 12 1015 12 HOH HOH . 
E 4 HOH A 13 1016 13 HOH HOH . 
E 4 HOH A 14 1017 14 HOH HOH . 
E 4 HOH A 15 1018 15 HOH HOH . 
E 4 HOH A 16 1019 16 HOH HOH . 
E 4 HOH A 17 1020 17 HOH HOH . 
E 4 HOH A 18 1021 18 HOH HOH . 
E 4 HOH A 19 1022 19 HOH HOH . 
E 4 HOH A 20 1023 20 HOH HOH . 
E 4 HOH A 21 1024 21 HOH HOH . 
E 4 HOH A 22 1025 22 HOH HOH . 
E 4 HOH A 23 1026 23 HOH HOH . 
E 4 HOH A 24 1027 24 HOH HOH . 
E 4 HOH A 25 1028 25 HOH HOH . 
E 4 HOH A 26 1029 26 HOH HOH . 
E 4 HOH A 27 1030 27 HOH HOH . 
E 4 HOH A 28 1031 28 HOH HOH . 
E 4 HOH A 29 1032 29 HOH HOH . 
E 4 HOH A 30 1033 30 HOH HOH . 
E 4 HOH A 31 1034 31 HOH HOH . 
E 4 HOH A 32 1035 32 HOH HOH . 
E 4 HOH A 33 1036 33 HOH HOH . 
E 4 HOH A 34 1037 34 HOH HOH . 
E 4 HOH A 35 1038 35 HOH HOH . 
E 4 HOH A 36 1039 36 HOH HOH . 
E 4 HOH A 37 1040 37 HOH HOH . 
E 4 HOH A 38 1041 38 HOH HOH . 
E 4 HOH A 39 1042 39 HOH HOH . 
E 4 HOH A 40 1043 40 HOH HOH . 
E 4 HOH A 41 1044 41 HOH HOH . 
E 4 HOH A 42 1045 42 HOH HOH . 
E 4 HOH A 43 1046 43 HOH HOH . 
E 4 HOH A 44 1047 44 HOH HOH . 
E 4 HOH A 45 1048 45 HOH HOH . 
E 4 HOH A 46 1049 46 HOH HOH . 
E 4 HOH A 47 1050 47 HOH HOH . 
E 4 HOH A 48 1051 48 HOH HOH . 
E 4 HOH A 49 1052 49 HOH HOH . 
E 4 HOH A 50 1053 50 HOH HOH . 
E 4 HOH A 51 1054 51 HOH HOH . 
E 4 HOH A 52 1055 52 HOH HOH . 
E 4 HOH A 53 1056 53 HOH HOH . 
E 4 HOH A 54 1057 54 HOH HOH . 
E 4 HOH A 55 1058 55 HOH HOH . 
E 4 HOH A 56 1059 56 HOH HOH . 
E 4 HOH A 57 1060 57 HOH HOH . 
E 4 HOH A 58 1061 58 HOH HOH . 
E 4 HOH A 59 1062 59 HOH HOH . 
E 4 HOH A 60 1063 60 HOH HOH . 
E 4 HOH A 61 1064 61 HOH HOH . 
E 4 HOH A 62 1065 62 HOH HOH . 
E 4 HOH A 63 1066 63 HOH HOH . 
E 4 HOH A 64 1067 64 HOH HOH . 
E 4 HOH A 65 1068 65 HOH HOH . 
E 4 HOH A 66 1069 66 HOH HOH . 
E 4 HOH A 67 1070 67 HOH HOH . 
E 4 HOH A 68 1071 68 HOH HOH . 
E 4 HOH A 69 1072 69 HOH HOH . 
E 4 HOH A 70 1073 70 HOH HOH . 
E 4 HOH A 71 1074 71 HOH HOH . 
E 4 HOH A 72 1075 72 HOH HOH . 
E 4 HOH A 73 1076 73 HOH HOH . 
E 4 HOH A 74 1077 74 HOH HOH . 
E 4 HOH A 75 1078 75 HOH HOH . 
E 4 HOH A 76 1079 76 HOH HOH . 
E 4 HOH A 77 1080 77 HOH HOH . 
E 4 HOH A 78 1081 78 HOH HOH . 
E 4 HOH A 79 1082 79 HOH HOH . 
E 4 HOH A 80 1083 80 HOH HOH . 
E 4 HOH A 81 1084 81 HOH HOH . 
E 4 HOH A 82 1085 82 HOH HOH . 
E 4 HOH A 83 1086 83 HOH HOH . 
E 4 HOH A 84 1087 84 HOH HOH . 
E 4 HOH A 85 1088 85 HOH HOH . 
E 4 HOH A 86 1089 86 HOH HOH . 
E 4 HOH A 87 1090 87 HOH HOH . 
E 4 HOH A 88 1091 88 HOH HOH . 
E 4 HOH A 89 1092 89 HOH HOH . 
E 4 HOH A 90 1093 90 HOH HOH . 
E 4 HOH A 91 1094 91 HOH HOH . 
E 4 HOH A 92 1095 92 HOH HOH . 
E 4 HOH A 93 1096 93 HOH HOH . 
E 4 HOH A 94 1097 94 HOH HOH . 
E 4 HOH A 95 1098 95 HOH HOH . 
E 4 HOH A 96 1099 96 HOH HOH . 
E 4 HOH A 97 1100 97 HOH HOH . 
E 4 HOH A 98 1101 98 HOH HOH . 
E 4 HOH A 99 1102 99 HOH HOH . 
E 4 HOH A 100 1103 100 HOH HOH . 
E 4 HOH A 101 1104 101 HOH HOH . 
E 4 HOH A 102 1105 102 HOH HOH . 
E 4 HOH A 103 1106 103 HOH HOH . 
E 4 HOH A 104 1107 104 HOH HOH . 
E 4 HOH A 105 1108 105 HOH HOH . 
E 4 HOH A 106 1109 106 HOH HOH . 
E 4 HOH A 107 1110 107 HOH HOH . 
E 4 HOH A 108 1111 108 HOH HOH . 
E 4 HOH A 109 1112 109 HOH HOH . 
E 4 HOH A 110 1113 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BU1 . . . D 3 17.492 71.652 3.523 1 40.54 ? C1 BU1 1003 A 1 
HETATM 2 C C2 BU1 . . . D 3 18.826 70.957 3.203 1 39.6 ? C2 BU1 1003 A 1 
HETATM 3 C C3 BU1 . . . D 3 18.775 70.345 1.79 1 37.68 ? C3 BU1 1003 A 1 
HETATM 4 C C4 BU1 . . . D 3 20.192 70.265 1.195 1 35.88 ? C4 BU1 1003 A 1 
HETATM 5 O O5 BU1 . . . D 3 17.571 72.228 4.829 1 42.93 ? O5 BU1 1003 A 1 
HETATM 6 O O6 BU1 . . . D 3 20.129 69.522 -0.016 1 35.89 ? O6 BU1 1003 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#