data_1M9B # _model_server_result.job_id oE_CUhhnuC7GqzivhUftlQ _model_server_result.datetime_utc '2024-12-03 13:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":220}' # _entry.id 1M9B # _exptl.entry_id 1M9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GAMMA-GLUTAMYL[S-(2-IODOBENZYL)CYSTEINYL]GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M9B _cell.length_a 116.567 _cell.length_b 116.567 _cell.length_c 78.748 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 174.8505 100.949983 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H22 I N3 O6 S' _chem_comp.formula_weight 523.343 _chem_comp.id IBG _chem_comp.mon_nstd_flag . _chem_comp.name GAMMA-GLUTAMYL[S-(2-IODOBENZYL)CYSTEINYL]GLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 IBG sing 152 n n N1 HN11 IBG sing 153 n n N1 HN12 IBG sing 154 n n CA1 C1 IBG sing 155 n n CA1 CB1 IBG sing 156 n n CA1 HA1C IBG sing 157 n n C1 O11 IBG doub 158 n n C1 O12 IBG sing 159 n n O12 H12 IBG sing 160 n n CB1 CG1 IBG sing 161 n n CB1 HCB1 IBG sing 162 n n CB1 HCB2 IBG sing 163 n n CG1 CD1 IBG sing 164 n n CG1 HCG1 IBG sing 165 n n CG1 HCG2 IBG sing 166 n n CD1 OE1 IBG doub 167 n n CD1 N2 IBG sing 168 n n N2 CA2 IBG sing 169 n n N2 HN2 IBG sing 170 n n CA2 C2 IBG sing 171 n n CA2 CB2 IBG sing 172 n n CA2 HA2C IBG sing 173 n n C2 O2 IBG doub 174 n n C2 N3 IBG sing 175 n n CB2 SG2 IBG sing 176 n n CB2 HB21 IBG sing 177 n n CB2 HB22 IBG sing 178 n n SG2 CS IBG sing 179 n n N3 CA3 IBG sing 180 n n N3 HN3 IBG sing 181 n n CA3 C3 IBG sing 182 n n CA3 HC31 IBG sing 183 n n CA3 HC32 IBG sing 184 n n C3 O31 IBG sing 185 n n C3 O32 IBG doub 186 n n O31 H31 IBG sing 187 n n CS C1S IBG sing 188 n n CS HCS1 IBG sing 189 n n CS HCS2 IBG sing 190 n n C1S C2S IBG doub 191 n y C1S C6S IBG sing 192 n y C2S C3S IBG sing 193 n y C2S I2S IBG sing 194 n n C3S C4S IBG doub 195 n y C3S H3S IBG sing 196 n n C4S C5S IBG sing 197 n y C4S H4S IBG sing 198 n n C5S C6S IBG doub 199 n y C5S H5S IBG sing 200 n n C6S H6S IBG sing 201 n n # _atom_sites.entry_id 1M9B _atom_sites.fract_transf_matrix[1][1] 0.008579 _atom_sites.fract_transf_matrix[1][2] 0.004953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IBG A 1 220 220 IBG IBG . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . C 3 HOH A 58 358 358 HOH HOH . C 3 HOH A 59 359 359 HOH HOH . C 3 HOH A 60 360 360 HOH HOH . C 3 HOH A 61 361 361 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IBG . . . B 2 76.974 60.763 -5.895 1 44.43 ? N1 IBG 220 A 1 HETATM 2 C CA1 IBG . . . B 2 75.98 60.04 -6.661 1 46.52 ? CA1 IBG 220 A 1 HETATM 3 C C1 IBG . . . B 2 74.64 60.367 -6.021 1 45.74 ? C1 IBG 220 A 1 HETATM 4 O O11 IBG . . . B 2 73.68 60.502 -6.754 1 45.01 ? O11 IBG 220 A 1 HETATM 5 O O12 IBG . . . B 2 74.572 60.487 -4.789 1 45.48 ? O12 IBG 220 A 1 HETATM 6 C CB1 IBG . . . B 2 76.326 58.544 -6.638 1 44.71 ? CB1 IBG 220 A 1 HETATM 7 C CG1 IBG . . . B 2 75.299 57.734 -7.413 1 46.26 ? CG1 IBG 220 A 1 HETATM 8 C CD1 IBG . . . B 2 75.535 56.236 -7.353 1 49.06 ? CD1 IBG 220 A 1 HETATM 9 O OE1 IBG . . . B 2 76.497 55.712 -6.738 1 46.6 ? OE1 IBG 220 A 1 HETATM 10 N N2 IBG . . . B 2 74.603 55.567 -7.998 1 51.81 ? N2 IBG 220 A 1 HETATM 11 C CA2 IBG . . . B 2 74.588 54.113 -8.052 1 54.6 ? CA2 IBG 220 A 1 HETATM 12 C C2 IBG . . . B 2 74.168 53.658 -9.436 1 54.97 ? C2 IBG 220 A 1 HETATM 13 O O2 IBG . . . B 2 73.832 52.462 -9.616 1 54.56 ? O2 IBG 220 A 1 HETATM 14 C CB2 IBG . . . B 2 73.598 53.524 -7.052 1 57.29 ? CB2 IBG 220 A 1 HETATM 15 S SG2 IBG . . . B 2 73.823 53.941 -5.286 1 57.99 ? SG2 IBG 220 A 1 HETATM 16 N N3 IBG . . . B 2 74.193 54.594 -10.405 1 56.93 ? N3 IBG 220 A 1 HETATM 17 C CA3 IBG . . . B 2 73.666 54.339 -11.733 1 58.81 ? CA3 IBG 220 A 1 HETATM 18 C C3 IBG . . . B 2 74.728 54.33 -12.806 1 59.07 ? C3 IBG 220 A 1 HETATM 19 O O31 IBG . . . B 2 74.336 54.146 -13.963 1 58.74 ? O31 IBG 220 A 1 HETATM 20 O O32 IBG . . . B 2 75.904 54.514 -12.482 1 59.85 ? O32 IBG 220 A 1 HETATM 21 C CS IBG . . . B 2 75.42 53.03 -5.031 1 67.81 ? CS IBG 220 A 1 HETATM 22 C C1S IBG . . . B 2 76.059 53.529 -3.721 1 74.76 ? C1S IBG 220 A 1 HETATM 23 C C2S IBG . . . B 2 75.543 53.216 -2.436 1 79.11 ? C2S IBG 220 A 1 HETATM 24 C C3S IBG . . . B 2 76.189 53.711 -1.258 1 79.65 ? C3S IBG 220 A 1 HETATM 25 I I2S IBG . . . B 2 73.786 51.996 -2.153 1 90.99 ? I2S IBG 220 A 1 HETATM 26 C C4S IBG . . . B 2 77.333 54.503 -1.334 1 78.13 ? C4S IBG 220 A 1 HETATM 27 C C5S IBG . . . B 2 77.843 54.812 -2.613 1 76.6 ? C5S IBG 220 A 1 HETATM 28 C C6S IBG . . . B 2 77.222 54.335 -3.798 1 75.05 ? C6S IBG 220 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #