data_1M9H # _model_server_result.job_id 3kaewFkPa9sScgV9BswcNQ _model_server_result.datetime_utc '2024-12-04 05:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1M9H # _exptl.entry_id 1M9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.66 _cell.angle_gamma 90 _cell.entry_id 1M9H _cell.length_a 111.95 _cell.length_b 55.24 _cell.length_c 51.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 92.926689 0 47.900785 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 224 n n PA O2A NAD sing 225 n n PA O5B NAD sing 226 n n PA O3 NAD sing 227 n n O2A HOA2 NAD sing 228 n n O5B C5B NAD sing 229 n n C5B C4B NAD sing 230 n n C5B H51A NAD sing 231 n n C5B H52A NAD sing 232 n n C4B O4B NAD sing 233 n n C4B C3B NAD sing 234 n n C4B H4B NAD sing 235 n n O4B C1B NAD sing 236 n n C3B O3B NAD sing 237 n n C3B C2B NAD sing 238 n n C3B H3B NAD sing 239 n n O3B HO3A NAD sing 240 n n C2B O2B NAD sing 241 n n C2B C1B NAD sing 242 n n C2B H2B NAD sing 243 n n O2B HO2A NAD sing 244 n n C1B N9A NAD sing 245 n n C1B H1B NAD sing 246 n n N9A C8A NAD sing 247 n y N9A C4A NAD sing 248 n y C8A N7A NAD doub 249 n y C8A H8A NAD sing 250 n n N7A C5A NAD sing 251 n y C5A C6A NAD sing 252 n y C5A C4A NAD doub 253 n y C6A N6A NAD sing 254 n n C6A N1A NAD doub 255 n y N6A H61A NAD sing 256 n n N6A H62A NAD sing 257 n n N1A C2A NAD sing 258 n y C2A N3A NAD doub 259 n y C2A H2A NAD sing 260 n n N3A C4A NAD sing 261 n y O3 PN NAD sing 262 n n PN O1N NAD doub 263 n n PN O2N NAD sing 264 n n PN O5D NAD sing 265 n n O5D C5D NAD sing 266 n n C5D C4D NAD sing 267 n n C5D H51N NAD sing 268 n n C5D H52N NAD sing 269 n n C4D O4D NAD sing 270 n n C4D C3D NAD sing 271 n n C4D H4D NAD sing 272 n n O4D C1D NAD sing 273 n n C3D O3D NAD sing 274 n n C3D C2D NAD sing 275 n n C3D H3D NAD sing 276 n n O3D HO3N NAD sing 277 n n C2D O2D NAD sing 278 n n C2D C1D NAD sing 279 n n C2D H2D NAD sing 280 n n O2D HO2N NAD sing 281 n n C1D N1N NAD sing 282 n n C1D H1D NAD sing 283 n n N1N C2N NAD sing 284 n y N1N C6N NAD doub 285 n y C2N C3N NAD doub 286 n y C2N H2N NAD sing 287 n n C3N C7N NAD sing 288 n n C3N C4N NAD sing 289 n y C7N O7N NAD doub 290 n n C7N N7N NAD sing 291 n n N7N H71N NAD sing 292 n n N7N H72N NAD sing 293 n n C4N C5N NAD doub 294 n y C4N H4N NAD sing 295 n n C5N C6N NAD sing 296 n y C5N H5N NAD sing 297 n n C6N H6N NAD sing 298 n n # _atom_sites.entry_id 1M9H _atom_sites.fract_transf_matrix[1][1] 0.008933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003547 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 301 SO4 SO4 . C 3 NAD A 1 300 300 NAD NAD . D 4 HOH A 1 302 302 HOH HOH . D 4 HOH A 2 303 303 HOH HOH . D 4 HOH A 3 304 304 HOH HOH . D 4 HOH A 4 305 305 HOH HOH . D 4 HOH A 5 306 306 HOH HOH . D 4 HOH A 6 307 307 HOH HOH . D 4 HOH A 7 308 308 HOH HOH . D 4 HOH A 8 309 309 HOH HOH . D 4 HOH A 9 310 310 HOH HOH . D 4 HOH A 10 311 311 HOH HOH . D 4 HOH A 11 312 312 HOH HOH . D 4 HOH A 12 313 313 HOH HOH . D 4 HOH A 13 314 314 HOH HOH . D 4 HOH A 14 315 315 HOH HOH . D 4 HOH A 15 316 316 HOH HOH . D 4 HOH A 16 317 317 HOH HOH . D 4 HOH A 17 318 318 HOH HOH . D 4 HOH A 18 319 319 HOH HOH . D 4 HOH A 19 320 320 HOH HOH . D 4 HOH A 20 321 321 HOH HOH . D 4 HOH A 21 322 322 HOH HOH . D 4 HOH A 22 323 323 HOH HOH . D 4 HOH A 23 324 324 HOH HOH . D 4 HOH A 24 325 325 HOH HOH . D 4 HOH A 25 326 326 HOH HOH . D 4 HOH A 26 327 327 HOH HOH . D 4 HOH A 27 328 328 HOH HOH . D 4 HOH A 28 329 329 HOH HOH . D 4 HOH A 29 330 330 HOH HOH . D 4 HOH A 30 331 331 HOH HOH . D 4 HOH A 31 332 332 HOH HOH . D 4 HOH A 32 333 333 HOH HOH . D 4 HOH A 33 334 334 HOH HOH . D 4 HOH A 34 335 335 HOH HOH . D 4 HOH A 35 336 336 HOH HOH . D 4 HOH A 36 337 337 HOH HOH . D 4 HOH A 37 338 338 HOH HOH . D 4 HOH A 38 339 339 HOH HOH . D 4 HOH A 39 340 340 HOH HOH . D 4 HOH A 40 341 341 HOH HOH . D 4 HOH A 41 342 342 HOH HOH . D 4 HOH A 42 343 343 HOH HOH . D 4 HOH A 43 344 344 HOH HOH . D 4 HOH A 44 345 345 HOH HOH . D 4 HOH A 45 346 346 HOH HOH . D 4 HOH A 46 347 347 HOH HOH . D 4 HOH A 47 348 348 HOH HOH . D 4 HOH A 48 349 349 HOH HOH . D 4 HOH A 49 350 350 HOH HOH . D 4 HOH A 50 351 351 HOH HOH . D 4 HOH A 51 352 352 HOH HOH . D 4 HOH A 52 353 353 HOH HOH . D 4 HOH A 53 354 354 HOH HOH . D 4 HOH A 54 355 355 HOH HOH . D 4 HOH A 55 356 356 HOH HOH . D 4 HOH A 56 357 357 HOH HOH . D 4 HOH A 57 358 358 HOH HOH . D 4 HOH A 58 359 359 HOH HOH . D 4 HOH A 59 360 360 HOH HOH . D 4 HOH A 60 361 361 HOH HOH . D 4 HOH A 61 362 362 HOH HOH . D 4 HOH A 62 363 363 HOH HOH . D 4 HOH A 63 364 364 HOH HOH . D 4 HOH A 64 365 365 HOH HOH . D 4 HOH A 65 366 366 HOH HOH . D 4 HOH A 66 367 367 HOH HOH . D 4 HOH A 67 368 368 HOH HOH . D 4 HOH A 68 369 369 HOH HOH . D 4 HOH A 69 370 370 HOH HOH . D 4 HOH A 70 371 371 HOH HOH . D 4 HOH A 71 372 372 HOH HOH . D 4 HOH A 72 373 373 HOH HOH . D 4 HOH A 73 374 374 HOH HOH . D 4 HOH A 74 375 375 HOH HOH . D 4 HOH A 75 376 376 HOH HOH . D 4 HOH A 76 377 377 HOH HOH . D 4 HOH A 77 378 378 HOH HOH . D 4 HOH A 78 379 379 HOH HOH . D 4 HOH A 79 380 380 HOH HOH . D 4 HOH A 80 381 381 HOH HOH . D 4 HOH A 81 382 382 HOH HOH . D 4 HOH A 82 383 383 HOH HOH . D 4 HOH A 83 384 384 HOH HOH . D 4 HOH A 84 385 385 HOH HOH . D 4 HOH A 85 386 386 HOH HOH . D 4 HOH A 86 387 387 HOH HOH . D 4 HOH A 87 388 388 HOH HOH . D 4 HOH A 88 389 389 HOH HOH . D 4 HOH A 89 390 390 HOH HOH . D 4 HOH A 90 391 391 HOH HOH . D 4 HOH A 91 392 392 HOH HOH . D 4 HOH A 92 393 393 HOH HOH . D 4 HOH A 93 394 394 HOH HOH . D 4 HOH A 94 395 395 HOH HOH . D 4 HOH A 95 396 396 HOH HOH . D 4 HOH A 96 397 397 HOH HOH . D 4 HOH A 97 398 398 HOH HOH . D 4 HOH A 98 399 399 HOH HOH . D 4 HOH A 99 400 400 HOH HOH . D 4 HOH A 100 401 401 HOH HOH . D 4 HOH A 101 402 402 HOH HOH . D 4 HOH A 102 403 403 HOH HOH . D 4 HOH A 103 404 404 HOH HOH . D 4 HOH A 104 405 405 HOH HOH . D 4 HOH A 105 406 406 HOH HOH . D 4 HOH A 106 407 407 HOH HOH . D 4 HOH A 107 408 408 HOH HOH . D 4 HOH A 108 409 409 HOH HOH . D 4 HOH A 109 410 410 HOH HOH . D 4 HOH A 110 411 411 HOH HOH . D 4 HOH A 111 412 412 HOH HOH . D 4 HOH A 112 413 413 HOH HOH . D 4 HOH A 113 414 414 HOH HOH . D 4 HOH A 114 415 415 HOH HOH . D 4 HOH A 115 416 416 HOH HOH . D 4 HOH A 116 417 417 HOH HOH . D 4 HOH A 117 418 418 HOH HOH . D 4 HOH A 118 419 419 HOH HOH . D 4 HOH A 119 420 420 HOH HOH . D 4 HOH A 120 421 421 HOH HOH . D 4 HOH A 121 422 422 HOH HOH . D 4 HOH A 122 423 423 HOH HOH . D 4 HOH A 123 424 424 HOH HOH . D 4 HOH A 124 425 425 HOH HOH . D 4 HOH A 125 426 426 HOH HOH . D 4 HOH A 126 427 427 HOH HOH . D 4 HOH A 127 428 428 HOH HOH . D 4 HOH A 128 429 429 HOH HOH . D 4 HOH A 129 430 430 HOH HOH . D 4 HOH A 130 431 431 HOH HOH . D 4 HOH A 131 432 432 HOH HOH . D 4 HOH A 132 433 433 HOH HOH . D 4 HOH A 133 434 434 HOH HOH . D 4 HOH A 134 435 435 HOH HOH . D 4 HOH A 135 436 436 HOH HOH . D 4 HOH A 136 437 437 HOH HOH . D 4 HOH A 137 438 438 HOH HOH . D 4 HOH A 138 439 439 HOH HOH . D 4 HOH A 139 440 440 HOH HOH . D 4 HOH A 140 441 441 HOH HOH . D 4 HOH A 141 442 442 HOH HOH . D 4 HOH A 142 443 443 HOH HOH . D 4 HOH A 143 444 444 HOH HOH . D 4 HOH A 144 445 445 HOH HOH . D 4 HOH A 145 446 446 HOH HOH . D 4 HOH A 146 447 447 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 36.83 16.321 5.079 1 30.06 ? PA NAD 300 A 1 HETATM 2 O O1A NAD . . . C 3 37.148 17.607 5.734 1 17.09 ? O1A NAD 300 A 1 HETATM 3 O O2A NAD . . . C 3 37.447 15.095 5.671 1 53.49 ? O2A NAD 300 A 1 HETATM 4 O O5B NAD . . . C 3 37.226 16.414 3.639 1 53.19 ? O5B NAD 300 A 1 HETATM 5 C C5B NAD . . . C 3 37.132 15.243 2.849 1 66.82 ? C5B NAD 300 A 1 HETATM 6 C C4B NAD . . . C 3 37.92 15.368 1.564 1 75.97 ? C4B NAD 300 A 1 HETATM 7 O O4B NAD . . . C 3 39.303 15.642 1.88 1 53.72 ? O4B NAD 300 A 1 HETATM 8 C C3B NAD . . . C 3 37.882 14.114 0.694 1 96.77 ? C3B NAD 300 A 1 HETATM 9 O O3B NAD . . . C 3 37.316 14.41 -0.58 1 117.09 ? O3B NAD 300 A 1 HETATM 10 C C2B NAD . . . C 3 39.33 13.649 0.579 1 66.65 ? C2B NAD 300 A 1 HETATM 11 O O2B NAD . . . C 3 39.718 13.361 -0.748 1 63.29 ? O2B NAD 300 A 1 HETATM 12 C C1B NAD . . . C 3 40.154 14.804 1.13 1 48.31 ? C1B NAD 300 A 1 HETATM 13 N N9A NAD . . . C 3 41.186 14.299 2.007 1 34.84 ? N9A NAD 300 A 1 HETATM 14 C C8A NAD . . . C 3 41.404 13.446 3.047 1 25.41 ? C8A NAD 300 A 1 HETATM 15 N N7A NAD . . . C 3 42.663 13.334 3.374 1 22.49 ? N7A NAD 300 A 1 HETATM 16 C C5A NAD . . . C 3 43.31 14.158 2.472 1 20.67 ? C5A NAD 300 A 1 HETATM 17 C C6A NAD . . . C 3 44.661 14.471 2.286 1 31.82 ? C6A NAD 300 A 1 HETATM 18 N N6A NAD . . . C 3 45.641 13.966 3.051 1 23.68 ? N6A NAD 300 A 1 HETATM 19 N N1A NAD . . . C 3 44.971 15.326 1.289 1 42.79 ? N1A NAD 300 A 1 HETATM 20 C C2A NAD . . . C 3 43.983 15.818 0.526 1 34.34 ? C2A NAD 300 A 1 HETATM 21 N N3A NAD . . . C 3 42.676 15.589 0.603 1 25.73 ? N3A NAD 300 A 1 HETATM 22 C C4A NAD . . . C 3 42.409 14.743 1.606 1 20.08 ? C4A NAD 300 A 1 HETATM 23 O O3 NAD . . . C 3 35.323 16.152 4.996 1 64.56 ? O3 NAD 300 A 1 HETATM 24 P PN NAD . . . C 3 34.341 14.877 5.443 1 65.04 ? PN NAD 300 A 1 HETATM 25 O O1N NAD . . . C 3 32.93 15.299 5.217 1 63.94 ? O1N NAD 300 A 1 HETATM 26 O O2N NAD . . . C 3 34.766 13.624 4.746 1 47.22 ? O2N NAD 300 A 1 HETATM 27 O O5D NAD . . . C 3 34.532 14.724 6.946 1 64.18 ? O5D NAD 300 A 1 HETATM 28 C C5D NAD . . . C 3 35.177 13.558 7.593 1 71.6 ? C5D NAD 300 A 1 HETATM 29 C C4D NAD . . . C 3 34.21 12.526 8.238 1 83.36 ? C4D NAD 300 A 1 HETATM 30 O O4D NAD . . . C 3 33.312 13.141 9.205 1 92.76 ? O4D NAD 300 A 1 HETATM 31 C C3D NAD . . . C 3 33.299 11.744 7.294 1 77.99 ? C3D NAD 300 A 1 HETATM 32 O O3D NAD . . . C 3 33.987 10.63 6.732 1 66.31 ? O3D NAD 300 A 1 HETATM 33 C C2D NAD . . . C 3 32.136 11.304 8.206 1 70.45 ? C2D NAD 300 A 1 HETATM 34 O O2D NAD . . . C 3 32.314 10.004 8.79 1 27.64 ? O2D NAD 300 A 1 HETATM 35 C C1D NAD . . . C 3 32.075 12.419 9.269 1 77.91 ? C1D NAD 300 A 1 HETATM 36 N N1N NAD . . . C 3 30.938 13.369 9.109 1 54.39 ? N1N NAD 300 A 1 HETATM 37 C C2N NAD . . . C 3 29.924 13.637 10.01 1 50.88 ? C2N NAD 300 A 1 HETATM 38 C C3N NAD . . . C 3 28.924 14.59 9.752 1 52.93 ? C3N NAD 300 A 1 HETATM 39 C C7N NAD . . . C 3 27.794 14.909 10.742 1 34.12 ? C7N NAD 300 A 1 HETATM 40 O O7N NAD . . . C 3 26.778 15.452 10.317 1 21.93 ? O7N NAD 300 A 1 HETATM 41 N N7N NAD . . . C 3 28.002 14.611 12.04 1 23.23 ? N7N NAD 300 A 1 HETATM 42 C C4N NAD . . . C 3 28.944 15.309 8.546 1 46.02 ? C4N NAD 300 A 1 HETATM 43 C C5N NAD . . . C 3 29.974 15.046 7.622 1 43.26 ? C5N NAD 300 A 1 HETATM 44 C C6N NAD . . . C 3 30.938 14.074 7.95 1 50.77 ? C6N NAD 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #