data_1M9J # _model_server_result.job_id MPwWxBeMsJwNSWcPN-opzA _model_server_result.datetime_utc '2024-12-03 18:12:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":903}' # _entry.id 1M9J # _exptl.entry_id 1M9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1M9J _cell.length_a 71.071 _cell.length_b 89.891 _cell.length_c 155.833 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 28 A CYS 94 1_555 C ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A SG CYS 33 A CYS 99 1_555 C ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 A SG CYS 118 A CYS 184 1_555 D FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 C ZN ZN . A ZN 903 1_555 B SG CYS 28 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 C ZN ZN . A ZN 903 1_555 B SG CYS 33 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B SG CYS 118 B CYS 184 1_555 F FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1M9J _atom_sites.fract_transf_matrix[1][1] 0.01407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 903 903 ZN ZN . D 3 HEM A 1 901 901 HEM HEM . E 4 CLW A 1 906 906 CLW CLZ . F 3 HEM B 1 901 901 HEM HEM . G 4 CLW B 1 907 907 CLW CLZ . H 5 HOH A 1 603 603 HOH H2O . H 5 HOH A 2 605 605 HOH H2O . H 5 HOH A 3 609 609 HOH H2O . H 5 HOH A 4 610 610 HOH H2O . H 5 HOH A 5 615 615 HOH H2O . H 5 HOH A 6 621 621 HOH H2O . H 5 HOH A 7 624 624 HOH H2O . H 5 HOH A 8 625 625 HOH H2O . H 5 HOH A 9 627 627 HOH H2O . H 5 HOH A 10 628 628 HOH H2O . H 5 HOH A 11 629 629 HOH H2O . H 5 HOH A 12 630 630 HOH H2O . H 5 HOH A 13 631 631 HOH H2O . H 5 HOH A 14 633 633 HOH H2O . H 5 HOH A 15 634 634 HOH H2O . H 5 HOH A 16 635 635 HOH H2O . H 5 HOH A 17 636 636 HOH H2O . H 5 HOH A 18 637 637 HOH H2O . H 5 HOH A 19 638 638 HOH H2O . H 5 HOH A 20 639 639 HOH H2O . H 5 HOH A 21 640 640 HOH H2O . H 5 HOH A 22 641 641 HOH H2O . H 5 HOH A 23 642 642 HOH H2O . H 5 HOH A 24 643 643 HOH H2O . H 5 HOH A 25 645 645 HOH H2O . H 5 HOH A 26 646 646 HOH H2O . H 5 HOH A 27 647 647 HOH H2O . H 5 HOH A 28 648 648 HOH H2O . H 5 HOH A 29 650 650 HOH H2O . H 5 HOH A 30 652 652 HOH H2O . H 5 HOH A 31 654 654 HOH H2O . H 5 HOH A 32 657 657 HOH H2O . H 5 HOH A 33 658 658 HOH H2O . H 5 HOH A 34 659 659 HOH H2O . H 5 HOH A 35 661 661 HOH H2O . H 5 HOH A 36 665 665 HOH H2O . H 5 HOH A 37 667 667 HOH H2O . H 5 HOH A 38 668 668 HOH H2O . H 5 HOH A 39 669 669 HOH H2O . H 5 HOH A 40 674 674 HOH H2O . H 5 HOH A 41 675 675 HOH H2O . H 5 HOH A 42 676 676 HOH H2O . H 5 HOH A 43 677 677 HOH H2O . H 5 HOH A 44 678 678 HOH H2O . H 5 HOH A 45 682 682 HOH H2O . H 5 HOH A 46 687 687 HOH H2O . H 5 HOH A 47 688 688 HOH H2O . H 5 HOH A 48 691 691 HOH H2O . H 5 HOH A 49 692 692 HOH H2O . H 5 HOH A 50 693 693 HOH H2O . H 5 HOH A 51 699 699 HOH H2O . H 5 HOH A 52 700 700 HOH H2O . H 5 HOH A 53 704 704 HOH H2O . H 5 HOH A 54 706 706 HOH H2O . H 5 HOH A 55 709 709 HOH H2O . H 5 HOH A 56 713 713 HOH H2O . H 5 HOH A 57 715 715 HOH H2O . H 5 HOH A 58 719 719 HOH H2O . H 5 HOH A 59 720 720 HOH H2O . H 5 HOH A 60 721 721 HOH H2O . H 5 HOH A 61 722 722 HOH H2O . H 5 HOH A 62 733 733 HOH H2O . H 5 HOH A 63 735 735 HOH H2O . H 5 HOH A 64 736 736 HOH H2O . H 5 HOH A 65 737 737 HOH H2O . H 5 HOH A 66 738 738 HOH H2O . H 5 HOH A 67 739 739 HOH H2O . H 5 HOH A 68 745 745 HOH H2O . H 5 HOH A 69 746 746 HOH H2O . H 5 HOH A 70 754 754 HOH H2O . H 5 HOH A 71 763 763 HOH H2O . H 5 HOH A 72 765 765 HOH H2O . H 5 HOH A 73 772 772 HOH H2O . H 5 HOH A 74 773 773 HOH H2O . I 5 HOH B 1 602 602 HOH H2O . I 5 HOH B 2 604 604 HOH H2O . I 5 HOH B 3 606 606 HOH H2O . I 5 HOH B 4 607 607 HOH H2O . I 5 HOH B 5 611 611 HOH H2O . I 5 HOH B 6 612 612 HOH H2O . I 5 HOH B 7 613 613 HOH H2O . I 5 HOH B 8 614 614 HOH H2O . I 5 HOH B 9 616 616 HOH H2O . I 5 HOH B 10 617 617 HOH H2O . I 5 HOH B 11 618 618 HOH H2O . I 5 HOH B 12 619 619 HOH H2O . I 5 HOH B 13 620 620 HOH H2O . I 5 HOH B 14 622 622 HOH H2O . I 5 HOH B 15 623 623 HOH H2O . I 5 HOH B 16 626 626 HOH H2O . I 5 HOH B 17 632 632 HOH H2O . I 5 HOH B 18 644 644 HOH H2O . I 5 HOH B 19 651 651 HOH H2O . I 5 HOH B 20 653 653 HOH H2O . I 5 HOH B 21 655 655 HOH H2O . I 5 HOH B 22 656 656 HOH H2O . I 5 HOH B 23 660 660 HOH H2O . I 5 HOH B 24 662 662 HOH H2O . I 5 HOH B 25 663 663 HOH H2O . I 5 HOH B 26 666 666 HOH H2O . I 5 HOH B 27 671 671 HOH H2O . I 5 HOH B 28 673 673 HOH H2O . I 5 HOH B 29 680 680 HOH H2O . I 5 HOH B 30 681 681 HOH H2O . I 5 HOH B 31 683 683 HOH H2O . I 5 HOH B 32 684 684 HOH H2O . I 5 HOH B 33 685 685 HOH H2O . I 5 HOH B 34 686 686 HOH H2O . I 5 HOH B 35 689 689 HOH H2O . I 5 HOH B 36 690 690 HOH H2O . I 5 HOH B 37 694 694 HOH H2O . I 5 HOH B 38 695 695 HOH H2O . I 5 HOH B 39 697 697 HOH H2O . I 5 HOH B 40 698 698 HOH H2O . I 5 HOH B 41 701 701 HOH H2O . I 5 HOH B 42 702 702 HOH H2O . I 5 HOH B 43 703 703 HOH H2O . I 5 HOH B 44 705 705 HOH H2O . I 5 HOH B 45 708 708 HOH H2O . I 5 HOH B 46 710 710 HOH H2O . I 5 HOH B 47 712 712 HOH H2O . I 5 HOH B 48 716 716 HOH H2O . I 5 HOH B 49 717 717 HOH H2O . I 5 HOH B 50 718 718 HOH H2O . I 5 HOH B 51 723 723 HOH H2O . I 5 HOH B 52 725 725 HOH H2O . I 5 HOH B 53 726 726 HOH H2O . I 5 HOH B 54 727 727 HOH H2O . I 5 HOH B 55 728 728 HOH H2O . I 5 HOH B 56 730 730 HOH H2O . I 5 HOH B 57 731 731 HOH H2O . I 5 HOH B 58 743 743 HOH H2O . I 5 HOH B 59 747 747 HOH H2O . I 5 HOH B 60 749 749 HOH H2O . I 5 HOH B 61 750 750 HOH H2O . I 5 HOH B 62 751 751 HOH H2O . I 5 HOH B 63 753 753 HOH H2O . I 5 HOH B 64 755 755 HOH H2O . I 5 HOH B 65 756 756 HOH H2O . I 5 HOH B 66 758 758 HOH H2O . I 5 HOH B 67 760 760 HOH H2O . I 5 HOH B 68 761 761 HOH H2O . I 5 HOH B 69 762 762 HOH H2O . I 5 HOH B 70 764 764 HOH H2O . I 5 HOH B 71 766 766 HOH H2O . I 5 HOH B 72 768 768 HOH H2O . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.027 _atom_site.Cartn_y -0.435 _atom_site.Cartn_z 35.998 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 7.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 903 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #