data_1M9T # _model_server_result.job_id 5Ug3H8l2gNTPjeETRghJIQ _model_server_result.datetime_utc '2024-11-06 03:03:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3001}' # _entry.id 1M9T # _exptl.entry_id 1M9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M9T _cell.length_a 214.422 _cell.length_b 214.422 _cell.length_c 113.267 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1,2 B,H,I,J,K,M 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 214.422 0 56.6335 3 'crystal symmetry operation' 9_766 -x+2,-x+y+1,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 321.633 185.694899 188.778333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 130 A CYS 194 1_555 C FE HEM . A HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 B SG CYS 130 B CYS 194 1_555 I FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 131 n n C1 C2 EDO sing 132 n n C1 H11 EDO sing 133 n n C1 H12 EDO sing 134 n n O1 HO1 EDO sing 135 n n C2 O2 EDO sing 136 n n C2 H21 EDO sing 137 n n C2 H22 EDO sing 138 n n O2 HO2 EDO sing 139 n n # _atom_sites.entry_id 1M9T _atom_sites.fract_transf_matrix[1][1] 0.004664 _atom_sites.fract_transf_matrix[1][2] 0.002693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 901 901 HEM HEM . D 3 H4B A 1 902 902 H4B HBI . E 4 INE A 1 906 906 INE 3BR . F 5 EDO A 1 3000 3000 EDO ETH . G 5 EDO A 1 3001 3001 EDO ETH . H 6 BOG B 1 3100 3100 BOG BOG . I 2 HEM B 1 901 901 HEM HEM . J 3 H4B B 1 903 902 H4B HBI . K 4 INE B 1 907 907 INE 3BR . L 7 HOH A 1 1003 1003 HOH H2O . L 7 HOH A 2 1007 1007 HOH H2O . L 7 HOH A 3 1009 1009 HOH H2O . L 7 HOH A 4 1010 1010 HOH H2O . L 7 HOH A 5 1012 1012 HOH H2O . L 7 HOH A 6 1013 1013 HOH H2O . L 7 HOH A 7 1014 1014 HOH H2O . L 7 HOH A 8 1017 1017 HOH H2O . L 7 HOH A 9 1018 1018 HOH H2O . L 7 HOH A 10 1021 1021 HOH H2O . L 7 HOH A 11 1022 1022 HOH H2O . L 7 HOH A 12 1024 1024 HOH H2O . L 7 HOH A 13 1025 1025 HOH H2O . L 7 HOH A 14 1026 1026 HOH H2O . L 7 HOH A 15 1032 1032 HOH H2O . L 7 HOH A 16 1034 1034 HOH H2O . L 7 HOH A 17 1035 1035 HOH H2O . L 7 HOH A 18 1037 1037 HOH H2O . L 7 HOH A 19 1039 1039 HOH H2O . L 7 HOH A 20 1040 1040 HOH H2O . L 7 HOH A 21 1041 1041 HOH H2O . L 7 HOH A 22 1042 1042 HOH H2O . L 7 HOH A 23 1043 1043 HOH H2O . L 7 HOH A 24 1045 1045 HOH H2O . L 7 HOH A 25 1046 1046 HOH H2O . L 7 HOH A 26 1047 1047 HOH H2O . L 7 HOH A 27 1050 1050 HOH H2O . L 7 HOH A 28 1051 1051 HOH H2O . L 7 HOH A 29 1053 1053 HOH H2O . L 7 HOH A 30 1054 1054 HOH H2O . L 7 HOH A 31 1055 1055 HOH H2O . L 7 HOH A 32 1056 1056 HOH H2O . L 7 HOH A 33 1057 1057 HOH H2O . L 7 HOH A 34 1058 1058 HOH H2O . L 7 HOH A 35 1059 1059 HOH H2O . L 7 HOH A 36 1060 1060 HOH H2O . L 7 HOH A 37 1090 1090 HOH H2O . L 7 HOH A 38 1091 1091 HOH H2O . L 7 HOH A 39 1092 1092 HOH H2O . L 7 HOH A 40 1093 1093 HOH H2O . L 7 HOH A 41 1094 1094 HOH H2O . L 7 HOH A 42 1096 1096 HOH H2O . L 7 HOH A 43 1098 1098 HOH H2O . L 7 HOH A 44 1099 1099 HOH H2O . L 7 HOH A 45 1101 1101 HOH H2O . L 7 HOH A 46 1102 1102 HOH H2O . L 7 HOH A 47 1104 1104 HOH H2O . L 7 HOH A 48 1105 1105 HOH H2O . L 7 HOH A 49 1106 1106 HOH H2O . L 7 HOH A 50 1107 1107 HOH H2O . L 7 HOH A 51 1108 1108 HOH H2O . L 7 HOH A 52 1115 1115 HOH H2O . L 7 HOH A 53 1116 1116 HOH H2O . L 7 HOH A 54 1117 1117 HOH H2O . L 7 HOH A 55 1118 1118 HOH H2O . L 7 HOH A 56 1120 1120 HOH H2O . L 7 HOH A 57 1121 1121 HOH H2O . L 7 HOH A 58 1122 1122 HOH H2O . L 7 HOH A 59 1126 1126 HOH H2O . L 7 HOH A 60 1136 1136 HOH H2O . L 7 HOH A 61 1137 1137 HOH H2O . L 7 HOH A 62 1139 1139 HOH H2O . L 7 HOH A 63 1142 1142 HOH H2O . L 7 HOH A 64 1143 1143 HOH H2O . L 7 HOH A 65 1144 1144 HOH H2O . L 7 HOH A 66 1145 1145 HOH H2O . L 7 HOH A 67 1146 1146 HOH H2O . L 7 HOH A 68 1149 1149 HOH H2O . L 7 HOH A 69 1151 1151 HOH H2O . L 7 HOH A 70 1152 1152 HOH H2O . L 7 HOH A 71 1153 1153 HOH H2O . L 7 HOH A 72 1155 1155 HOH H2O . L 7 HOH A 73 1156 1156 HOH H2O . L 7 HOH A 74 1157 1157 HOH H2O . L 7 HOH A 75 1160 1160 HOH H2O . L 7 HOH A 76 1163 1163 HOH H2O . L 7 HOH A 77 1164 1164 HOH H2O . L 7 HOH A 78 1165 1165 HOH H2O . L 7 HOH A 79 1168 1168 HOH H2O . L 7 HOH A 80 1169 1169 HOH H2O . L 7 HOH A 81 1171 1171 HOH H2O . L 7 HOH A 82 1173 1173 HOH H2O . L 7 HOH A 83 1174 1174 HOH H2O . L 7 HOH A 84 1175 1175 HOH H2O . L 7 HOH A 85 1176 1176 HOH H2O . L 7 HOH A 86 1177 1177 HOH H2O . L 7 HOH A 87 1179 1179 HOH H2O . L 7 HOH A 88 1180 1180 HOH H2O . L 7 HOH A 89 1181 1181 HOH H2O . L 7 HOH A 90 1184 1184 HOH H2O . L 7 HOH A 91 1187 1187 HOH H2O . L 7 HOH A 92 1188 1188 HOH H2O . L 7 HOH A 93 1189 1189 HOH H2O . L 7 HOH A 94 1191 1191 HOH H2O . L 7 HOH A 95 1193 1193 HOH H2O . L 7 HOH A 96 1196 1196 HOH H2O . L 7 HOH A 97 1197 1197 HOH H2O . L 7 HOH A 98 1210 1210 HOH H2O . L 7 HOH A 99 1212 1212 HOH H2O . L 7 HOH A 100 1215 1215 HOH H2O . L 7 HOH A 101 1216 1216 HOH H2O . L 7 HOH A 102 1218 1218 HOH H2O . L 7 HOH A 103 1219 1219 HOH H2O . L 7 HOH A 104 1222 1222 HOH H2O . L 7 HOH A 105 1225 1225 HOH H2O . L 7 HOH A 106 1226 1226 HOH H2O . L 7 HOH A 107 1227 1227 HOH H2O . L 7 HOH A 108 1230 1230 HOH H2O . L 7 HOH A 109 1231 1231 HOH H2O . L 7 HOH A 110 1234 1234 HOH H2O . L 7 HOH A 111 1235 1235 HOH H2O . L 7 HOH A 112 1236 1236 HOH H2O . L 7 HOH A 113 1237 1237 HOH H2O . L 7 HOH A 114 1238 1238 HOH H2O . L 7 HOH A 115 1239 1239 HOH H2O . L 7 HOH A 116 1241 1241 HOH H2O . L 7 HOH A 117 1244 1244 HOH H2O . L 7 HOH A 118 1245 1245 HOH H2O . L 7 HOH A 119 1249 1249 HOH H2O . L 7 HOH A 120 1250 1250 HOH H2O . L 7 HOH A 121 1252 1252 HOH H2O . L 7 HOH A 122 1253 1253 HOH H2O . L 7 HOH A 123 1254 1254 HOH H2O . L 7 HOH A 124 1257 1257 HOH H2O . L 7 HOH A 125 1260 1260 HOH H2O . L 7 HOH A 126 1262 1262 HOH H2O . L 7 HOH A 127 1265 1265 HOH H2O . L 7 HOH A 128 1269 1269 HOH H2O . L 7 HOH A 129 1271 1271 HOH H2O . L 7 HOH A 130 1275 1275 HOH H2O . L 7 HOH A 131 1276 1276 HOH H2O . L 7 HOH A 132 1280 1280 HOH H2O . M 7 HOH B 1 1002 1002 HOH H2O . M 7 HOH B 2 1004 1004 HOH H2O . M 7 HOH B 3 1005 1005 HOH H2O . M 7 HOH B 4 1006 1006 HOH H2O . M 7 HOH B 5 1008 1008 HOH H2O . M 7 HOH B 6 1011 1011 HOH H2O . M 7 HOH B 7 1015 1015 HOH H2O . M 7 HOH B 8 1016 1016 HOH H2O . M 7 HOH B 9 1019 1019 HOH H2O . M 7 HOH B 10 1020 1020 HOH H2O . M 7 HOH B 11 1023 1023 HOH H2O . M 7 HOH B 12 1027 1027 HOH H2O . M 7 HOH B 13 1028 1028 HOH H2O . M 7 HOH B 14 1029 1029 HOH H2O . M 7 HOH B 15 1030 1030 HOH H2O . M 7 HOH B 16 1031 1031 HOH H2O . M 7 HOH B 17 1033 1033 HOH H2O . M 7 HOH B 18 1036 1036 HOH H2O . M 7 HOH B 19 1061 1061 HOH H2O . M 7 HOH B 20 1062 1062 HOH H2O . M 7 HOH B 21 1063 1063 HOH H2O . M 7 HOH B 22 1064 1064 HOH H2O . M 7 HOH B 23 1065 1065 HOH H2O . M 7 HOH B 24 1066 1066 HOH H2O . M 7 HOH B 25 1067 1067 HOH H2O . M 7 HOH B 26 1068 1068 HOH H2O . M 7 HOH B 27 1069 1069 HOH H2O . M 7 HOH B 28 1071 1071 HOH H2O . M 7 HOH B 29 1072 1072 HOH H2O . M 7 HOH B 30 1073 1073 HOH H2O . M 7 HOH B 31 1074 1074 HOH H2O . M 7 HOH B 32 1076 1076 HOH H2O . M 7 HOH B 33 1077 1077 HOH H2O . M 7 HOH B 34 1078 1078 HOH H2O . M 7 HOH B 35 1079 1079 HOH H2O . M 7 HOH B 36 1081 1081 HOH H2O . M 7 HOH B 37 1082 1082 HOH H2O . M 7 HOH B 38 1083 1083 HOH H2O . M 7 HOH B 39 1084 1084 HOH H2O . M 7 HOH B 40 1085 1085 HOH H2O . M 7 HOH B 41 1086 1086 HOH H2O . M 7 HOH B 42 1087 1087 HOH H2O . M 7 HOH B 43 1088 1088 HOH H2O . M 7 HOH B 44 1089 1089 HOH H2O . M 7 HOH B 45 1097 1097 HOH H2O . M 7 HOH B 46 1100 1100 HOH H2O . M 7 HOH B 47 1103 1103 HOH H2O . M 7 HOH B 48 1109 1109 HOH H2O . M 7 HOH B 49 1110 1110 HOH H2O . M 7 HOH B 50 1111 1111 HOH H2O . M 7 HOH B 51 1112 1112 HOH H2O . M 7 HOH B 52 1113 1113 HOH H2O . M 7 HOH B 53 1114 1114 HOH H2O . M 7 HOH B 54 1119 1119 HOH H2O . M 7 HOH B 55 1123 1123 HOH H2O . M 7 HOH B 56 1124 1124 HOH H2O . M 7 HOH B 57 1125 1125 HOH H2O . M 7 HOH B 58 1127 1127 HOH H2O . M 7 HOH B 59 1128 1128 HOH H2O . M 7 HOH B 60 1129 1129 HOH H2O . M 7 HOH B 61 1130 1130 HOH H2O . M 7 HOH B 62 1131 1131 HOH H2O . M 7 HOH B 63 1132 1132 HOH H2O . M 7 HOH B 64 1133 1133 HOH H2O . M 7 HOH B 65 1134 1134 HOH H2O . M 7 HOH B 66 1135 1135 HOH H2O . M 7 HOH B 67 1138 1138 HOH H2O . M 7 HOH B 68 1140 1140 HOH H2O . M 7 HOH B 69 1141 1141 HOH H2O . M 7 HOH B 70 1147 1147 HOH H2O . M 7 HOH B 71 1154 1154 HOH H2O . M 7 HOH B 72 1158 1158 HOH H2O . M 7 HOH B 73 1159 1159 HOH H2O . M 7 HOH B 74 1161 1161 HOH H2O . M 7 HOH B 75 1162 1162 HOH H2O . M 7 HOH B 76 1166 1166 HOH H2O . M 7 HOH B 77 1167 1167 HOH H2O . M 7 HOH B 78 1170 1170 HOH H2O . M 7 HOH B 79 1172 1172 HOH H2O . M 7 HOH B 80 1178 1178 HOH H2O . M 7 HOH B 81 1182 1182 HOH H2O . M 7 HOH B 82 1183 1183 HOH H2O . M 7 HOH B 83 1185 1185 HOH H2O . M 7 HOH B 84 1186 1186 HOH H2O . M 7 HOH B 85 1190 1190 HOH H2O . M 7 HOH B 86 1194 1194 HOH H2O . M 7 HOH B 87 1198 1198 HOH H2O . M 7 HOH B 88 1199 1199 HOH H2O . M 7 HOH B 89 1213 1213 HOH H2O . M 7 HOH B 90 1214 1214 HOH H2O . M 7 HOH B 91 1220 1220 HOH H2O . M 7 HOH B 92 1223 1223 HOH H2O . M 7 HOH B 93 1224 1224 HOH H2O . M 7 HOH B 94 1229 1229 HOH H2O . M 7 HOH B 95 1233 1233 HOH H2O . M 7 HOH B 96 1240 1240 HOH H2O . M 7 HOH B 97 1242 1242 HOH H2O . M 7 HOH B 98 1243 1243 HOH H2O . M 7 HOH B 99 1246 1246 HOH H2O . M 7 HOH B 100 1247 1247 HOH H2O . M 7 HOH B 101 1248 1248 HOH H2O . M 7 HOH B 102 1251 1251 HOH H2O . M 7 HOH B 103 1255 1255 HOH H2O . M 7 HOH B 104 1256 1256 HOH H2O . M 7 HOH B 105 1258 1258 HOH H2O . M 7 HOH B 106 1259 1259 HOH H2O . M 7 HOH B 107 1261 1261 HOH H2O . M 7 HOH B 108 1263 1263 HOH H2O . M 7 HOH B 109 1264 1264 HOH H2O . M 7 HOH B 110 1266 1266 HOH H2O . M 7 HOH B 111 1267 1267 HOH H2O . M 7 HOH B 112 1268 1268 HOH H2O . M 7 HOH B 113 1270 1270 HOH H2O . M 7 HOH B 114 1272 1272 HOH H2O . M 7 HOH B 115 1273 1273 HOH H2O . M 7 HOH B 116 1274 1274 HOH H2O . M 7 HOH B 117 1277 1277 HOH H2O . M 7 HOH B 118 1278 1278 HOH H2O . M 7 HOH B 119 1279 1279 HOH H2O . M 7 HOH B 120 1281 1281 HOH H2O . M 7 HOH B 121 1282 1282 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 125.669 96.624 15.407 1 57.82 ? C1 EDO 3001 A 1 HETATM 2 O O1 EDO . . . G 5 127.028 96.655 14.93 1 59.49 ? O1 EDO 3001 A 1 HETATM 3 C C2 EDO . . . G 5 125.779 96.553 16.918 1 58.77 ? C2 EDO 3001 A 1 HETATM 4 O O2 EDO . . . G 5 126.516 97.734 17.254 1 65.78 ? O2 EDO 3001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #