data_1M9Z # _model_server_result.job_id iyF9da1zvzImA9jKeJcpKw _model_server_result.datetime_utc '2024-11-04 22:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":910}' # _entry.id 1M9Z # _exptl.entry_id 1M9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1M9Z _cell.length_a 35.471 _cell.length_b 40.658 _cell.length_c 76.154 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 28 1_555 A SG CYS 36 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 6 A CYS 31 1_555 A SG CYS 23 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 13 A CYS 38 1_555 A SG CYS 19 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 29 A CYS 54 1_555 A SG CYS 53 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 73 A CYS 98 1_555 A SG CYS 88 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 A SG CYS 90 A CYS 115 1_555 A SG CYS 95 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1M9Z _atom_sites.fract_transf_matrix[1][1] 0.028192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 910 910 GOL CRY . C 3 HOH A 1 911 1 HOH HOH . C 3 HOH A 2 912 2 HOH HOH . C 3 HOH A 3 913 3 HOH HOH . C 3 HOH A 4 914 4 HOH HOH . C 3 HOH A 5 915 5 HOH HOH . C 3 HOH A 6 916 6 HOH HOH . C 3 HOH A 7 917 7 HOH HOH . C 3 HOH A 8 918 8 HOH HOH . C 3 HOH A 9 919 9 HOH HOH . C 3 HOH A 10 920 10 HOH HOH . C 3 HOH A 11 921 11 HOH HOH . C 3 HOH A 12 922 12 HOH HOH . C 3 HOH A 13 923 13 HOH HOH . C 3 HOH A 14 924 14 HOH HOH . C 3 HOH A 15 925 15 HOH HOH . C 3 HOH A 16 926 16 HOH HOH . C 3 HOH A 17 927 17 HOH HOH . C 3 HOH A 18 928 19 HOH HOH . C 3 HOH A 19 929 20 HOH HOH . C 3 HOH A 20 930 21 HOH HOH . C 3 HOH A 21 931 22 HOH HOH . C 3 HOH A 22 932 23 HOH HOH . C 3 HOH A 23 933 25 HOH HOH . C 3 HOH A 24 934 26 HOH HOH . C 3 HOH A 25 935 27 HOH HOH . C 3 HOH A 26 936 28 HOH HOH . C 3 HOH A 27 937 29 HOH HOH . C 3 HOH A 28 938 30 HOH HOH . C 3 HOH A 29 939 31 HOH HOH . C 3 HOH A 30 940 32 HOH HOH . C 3 HOH A 31 941 33 HOH HOH . C 3 HOH A 32 942 34 HOH HOH . C 3 HOH A 33 943 35 HOH HOH . C 3 HOH A 34 944 36 HOH HOH . C 3 HOH A 35 945 37 HOH HOH . C 3 HOH A 36 946 38 HOH HOH . C 3 HOH A 37 947 39 HOH HOH . C 3 HOH A 38 948 40 HOH HOH . C 3 HOH A 39 949 41 HOH HOH . C 3 HOH A 40 950 42 HOH HOH . C 3 HOH A 41 951 43 HOH HOH . C 3 HOH A 42 952 44 HOH HOH . C 3 HOH A 43 953 45 HOH HOH . C 3 HOH A 44 954 46 HOH HOH . C 3 HOH A 45 955 47 HOH HOH . C 3 HOH A 46 956 48 HOH HOH . C 3 HOH A 47 957 49 HOH HOH . C 3 HOH A 48 958 50 HOH HOH . C 3 HOH A 49 959 51 HOH HOH . C 3 HOH A 50 960 52 HOH HOH . C 3 HOH A 51 961 53 HOH HOH . C 3 HOH A 52 962 54 HOH HOH . C 3 HOH A 53 963 55 HOH HOH . C 3 HOH A 54 964 56 HOH HOH . C 3 HOH A 55 965 57 HOH HOH . C 3 HOH A 56 966 58 HOH HOH . C 3 HOH A 57 967 59 HOH HOH . C 3 HOH A 58 968 60 HOH HOH . C 3 HOH A 59 969 61 HOH HOH . C 3 HOH A 60 970 64 HOH HOH . C 3 HOH A 61 971 65 HOH HOH . C 3 HOH A 62 972 66 HOH HOH . C 3 HOH A 63 973 67 HOH HOH . C 3 HOH A 64 974 68 HOH HOH . C 3 HOH A 65 975 69 HOH HOH . C 3 HOH A 66 976 70 HOH HOH . C 3 HOH A 67 977 71 HOH HOH . C 3 HOH A 68 978 72 HOH HOH . C 3 HOH A 69 979 73 HOH HOH . C 3 HOH A 70 980 74 HOH HOH . C 3 HOH A 71 981 76 HOH HOH . C 3 HOH A 72 982 77 HOH HOH . C 3 HOH A 73 983 78 HOH HOH . C 3 HOH A 74 984 79 HOH HOH . C 3 HOH A 75 985 80 HOH HOH . C 3 HOH A 76 986 81 HOH HOH . C 3 HOH A 77 987 82 HOH HOH . C 3 HOH A 78 988 83 HOH HOH . C 3 HOH A 79 989 84 HOH HOH . C 3 HOH A 80 990 85 HOH HOH . C 3 HOH A 81 991 86 HOH HOH . C 3 HOH A 82 992 87 HOH HOH . C 3 HOH A 83 993 88 HOH HOH . C 3 HOH A 84 994 90 HOH HOH . C 3 HOH A 85 995 91 HOH HOH . C 3 HOH A 86 996 92 HOH HOH . C 3 HOH A 87 997 93 HOH HOH . C 3 HOH A 88 998 94 HOH HOH . C 3 HOH A 89 999 95 HOH HOH . C 3 HOH A 90 1000 96 HOH HOH . C 3 HOH A 91 1001 97 HOH HOH . C 3 HOH A 92 1002 98 HOH HOH . C 3 HOH A 93 1003 99 HOH HOH . C 3 HOH A 94 1004 100 HOH HOH . C 3 HOH A 95 1005 101 HOH HOH . C 3 HOH A 96 1006 102 HOH HOH . C 3 HOH A 97 1007 103 HOH HOH . C 3 HOH A 98 1008 104 HOH HOH . C 3 HOH A 99 1009 105 HOH HOH . C 3 HOH A 100 1010 106 HOH HOH . C 3 HOH A 101 1011 107 HOH HOH . C 3 HOH A 102 1012 110 HOH HOH . C 3 HOH A 103 1013 111 HOH HOH . C 3 HOH A 104 1014 112 HOH HOH . C 3 HOH A 105 1015 113 HOH HOH . C 3 HOH A 106 1016 115 HOH HOH . C 3 HOH A 107 1017 117 HOH HOH . C 3 HOH A 108 1018 118 HOH HOH . C 3 HOH A 109 1019 119 HOH HOH . C 3 HOH A 110 1020 121 HOH HOH . C 3 HOH A 111 1021 123 HOH HOH . C 3 HOH A 112 1022 125 HOH HOH . C 3 HOH A 113 1023 126 HOH HOH . C 3 HOH A 114 1024 127 HOH HOH . C 3 HOH A 115 1025 128 HOH HOH . C 3 HOH A 116 1026 301 HOH HOH . C 3 HOH A 117 1027 304 HOH HOH . C 3 HOH A 118 1028 306 HOH HOH . C 3 HOH A 119 1029 307 HOH HOH . C 3 HOH A 120 1030 309 HOH HOH . C 3 HOH A 121 1031 310 HOH HOH . C 3 HOH A 122 1032 311 HOH HOH . C 3 HOH A 123 1033 314 HOH HOH . C 3 HOH A 124 1034 316 HOH HOH . C 3 HOH A 125 1035 318 HOH HOH . C 3 HOH A 126 1036 319 HOH HOH . C 3 HOH A 127 1037 320 HOH HOH . C 3 HOH A 128 1038 321 HOH HOH . C 3 HOH A 129 1039 322 HOH HOH . C 3 HOH A 130 1040 323 HOH HOH . C 3 HOH A 131 1041 325 HOH HOH . C 3 HOH A 132 1042 326 HOH HOH . C 3 HOH A 133 1043 327 HOH HOH . C 3 HOH A 134 1044 328 HOH HOH . C 3 HOH A 135 1045 329 HOH HOH . C 3 HOH A 136 1046 330 HOH HOH . C 3 HOH A 137 1047 332 HOH HOH . C 3 HOH A 138 1048 336 HOH HOH . C 3 HOH A 139 1049 338 HOH HOH . C 3 HOH A 140 1050 339 HOH HOH . C 3 HOH A 141 1051 340 HOH HOH . C 3 HOH A 142 1052 341 HOH HOH . C 3 HOH A 143 1053 343 HOH HOH . C 3 HOH A 144 1054 344 HOH HOH . C 3 HOH A 145 1055 345 HOH HOH . C 3 HOH A 146 1056 346 HOH HOH . C 3 HOH A 147 1057 349 HOH HOH . C 3 HOH A 148 1058 352 HOH HOH . C 3 HOH A 149 1059 353 HOH HOH . C 3 HOH A 150 1060 354 HOH HOH . C 3 HOH A 151 1061 356 HOH HOH . C 3 HOH A 152 1062 357 HOH HOH . C 3 HOH A 153 1063 358 HOH HOH . C 3 HOH A 154 1064 361 HOH HOH . C 3 HOH A 155 1065 363 HOH HOH . C 3 HOH A 156 1066 366 HOH HOH . C 3 HOH A 157 1067 400 HOH HOH . C 3 HOH A 158 1068 402 HOH HOH . C 3 HOH A 159 1069 403 HOH HOH . C 3 HOH A 160 1070 404 HOH HOH . C 3 HOH A 161 1071 405 HOH HOH . C 3 HOH A 162 1072 406 HOH HOH . C 3 HOH A 163 1073 407 HOH HOH . C 3 HOH A 164 1074 408 HOH HOH . C 3 HOH A 165 1075 409 HOH HOH . C 3 HOH A 166 1076 410 HOH HOH . C 3 HOH A 167 1077 411 HOH HOH . C 3 HOH A 168 1078 412 HOH HOH . C 3 HOH A 169 1079 413 HOH HOH . C 3 HOH A 170 1080 415 HOH HOH . C 3 HOH A 171 1081 416 HOH HOH . C 3 HOH A 172 1082 417 HOH HOH . C 3 HOH A 173 1083 419 HOH HOH . C 3 HOH A 174 1084 420 HOH HOH . C 3 HOH A 175 1085 421 HOH HOH . C 3 HOH A 176 1086 422 HOH HOH . C 3 HOH A 177 1087 423 HOH HOH . C 3 HOH A 178 1088 424 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 18.262 47.959 5.676 1 25.8 ? C1 GOL 910 A 1 HETATM 2 O O1 GOL . . . B 2 17.062 48.19 6.406 1 21.75 ? O1 GOL 910 A 1 HETATM 3 C C2 GOL . . . B 2 18.192 48.393 4.21 1 27.1 ? C2 GOL 910 A 1 HETATM 4 O O2 GOL . . . B 2 16.863 48.626 3.769 1 27.14 ? O2 GOL 910 A 1 HETATM 5 C C3 GOL . . . B 2 18.825 47.331 3.316 1 27 ? C3 GOL 910 A 1 HETATM 6 O O3 GOL . . . B 2 20.088 47.809 2.879 1 27.61 ? O3 GOL 910 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #