data_1MAA # _model_server_result.job_id wcrCo5iulGxmd13rmEGe5g _model_server_result.datetime_utc '2024-11-27 01:00:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1maa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":954}' # _entry.id 1MAA # _exptl.entry_id 1MAA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MAA _cell.length_a 136.55 _cell.length_b 173.13 _cell.length_c 224.25 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MAA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,R,S 1 1 C,D,E,L,M,N,O,P,Q,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 K N N ? 5 O N N ? 5 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG ? 609 NAG 2 n E NAG 2 E 2 NAG ? 608 NAG 2 n E FUL 3 E 3 FUL ? 610 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 C SG CYS 69 C CYS 69 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 C SG CYS 257 C CYS 257 1_555 C SG CYS 272 C CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 C SG CYS 409 C CYS 409 1_555 C SG CYS 529 C CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf10 D SG CYS 69 D CYS 69 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 D SG CYS 257 D CYS 257 1_555 D SG CYS 272 D CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 D SG CYS 409 D CYS 409 1_555 D SG CYS 529 D CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 F C1 NAG . A NAG 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? covale ? covale2 D ND2 ASN 350 D ASN 350 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale3 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale4 E O6 NAG . E NAG 1 1_555 E C1 FUL . E FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 207 n n C1 C2 GOL sing 208 n n C1 H11 GOL sing 209 n n C1 H12 GOL sing 210 n n O1 HO1 GOL sing 211 n n C2 O2 GOL sing 212 n n C2 C3 GOL sing 213 n n C2 H2 GOL sing 214 n n O2 HO2 GOL sing 215 n n C3 O3 GOL sing 216 n n C3 H31 GOL sing 217 n n C3 H32 GOL sing 218 n n O3 HO3 GOL sing 219 n n # _atom_sites.entry_id 1MAA _atom_sites.fract_transf_matrix[1][1] 0.007323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG A 1 709 709 NAG NAG . G 4 DME A 1 998 998 DME DME . H 5 GOL A 1 954 954 GOL GOL . I 6 PO4 B 1 548 1 PO4 PO4 . J 4 DME B 1 996 996 DME DME . K 5 GOL B 1 953 953 GOL GOL . L 6 PO4 C 1 548 349 PO4 PO4 . M 4 DME C 1 997 997 DME DME . N 6 PO4 C 1 998 101 PO4 PO4 . O 5 GOL C 1 951 951 GOL GOL . P 4 DME D 1 999 999 DME DME . Q 5 GOL D 1 952 952 GOL GOL . R 7 HOH A 1 999 206 HOH HOH . R 7 HOH A 2 1000 208 HOH HOH . R 7 HOH A 3 1001 217 HOH HOH . R 7 HOH A 4 1002 233 HOH HOH . R 7 HOH A 5 1003 236 HOH HOH . R 7 HOH A 6 1004 238 HOH HOH . R 7 HOH A 7 1005 253 HOH HOH . R 7 HOH A 8 1006 254 HOH HOH . R 7 HOH A 9 1007 257 HOH HOH . R 7 HOH A 10 1008 280 HOH HOH . R 7 HOH A 11 1009 283 HOH HOH . R 7 HOH A 12 1010 303 HOH HOH . R 7 HOH A 13 1011 305 HOH HOH . R 7 HOH A 14 1012 310 HOH HOH . R 7 HOH A 15 1013 317 HOH HOH . R 7 HOH A 16 1014 320 HOH HOH . R 7 HOH A 17 1015 323 HOH HOH . R 7 HOH A 18 1016 329 HOH HOH . R 7 HOH A 19 1017 336 HOH HOH . R 7 HOH A 20 1018 341 HOH HOH . R 7 HOH A 21 1019 343 HOH HOH . R 7 HOH A 22 1020 356 HOH HOH . R 7 HOH A 23 1021 370 HOH HOH . R 7 HOH A 24 1022 376 HOH HOH . R 7 HOH A 25 1023 379 HOH HOH . R 7 HOH A 26 1024 380 HOH HOH . R 7 HOH A 27 1025 309 HOH HOH . S 7 HOH B 1 997 202 HOH HOH . S 7 HOH B 2 998 203 HOH HOH . S 7 HOH B 3 999 207 HOH HOH . S 7 HOH B 4 1000 211 HOH HOH . S 7 HOH B 5 1001 215 HOH HOH . S 7 HOH B 6 1002 218 HOH HOH . S 7 HOH B 7 1003 230 HOH HOH . S 7 HOH B 8 1004 231 HOH HOH . S 7 HOH B 9 1005 232 HOH HOH . S 7 HOH B 10 1006 234 HOH HOH . S 7 HOH B 11 1007 239 HOH HOH . S 7 HOH B 12 1008 240 HOH HOH . S 7 HOH B 13 1009 245 HOH HOH . S 7 HOH B 14 1010 251 HOH HOH . S 7 HOH B 15 1011 256 HOH HOH . S 7 HOH B 16 1012 258 HOH HOH . S 7 HOH B 17 1013 261 HOH HOH . S 7 HOH B 18 1014 262 HOH HOH . S 7 HOH B 19 1015 264 HOH HOH . S 7 HOH B 20 1016 265 HOH HOH . S 7 HOH B 21 1017 267 HOH HOH . S 7 HOH B 22 1018 268 HOH HOH . S 7 HOH B 23 1019 269 HOH HOH . S 7 HOH B 24 1020 271 HOH HOH . S 7 HOH B 25 1021 274 HOH HOH . S 7 HOH B 26 1022 282 HOH HOH . S 7 HOH B 27 1023 291 HOH HOH . S 7 HOH B 28 1024 295 HOH HOH . S 7 HOH B 29 1025 300 HOH HOH . S 7 HOH B 30 1026 306 HOH HOH . S 7 HOH B 31 1027 307 HOH HOH . S 7 HOH B 32 1028 311 HOH HOH . S 7 HOH B 33 1029 318 HOH HOH . S 7 HOH B 34 1030 322 HOH HOH . S 7 HOH B 35 1031 333 HOH HOH . S 7 HOH B 36 1032 335 HOH HOH . S 7 HOH B 37 1033 337 HOH HOH . S 7 HOH B 38 1034 339 HOH HOH . S 7 HOH B 39 1035 342 HOH HOH . S 7 HOH B 40 1036 345 HOH HOH . S 7 HOH B 41 1037 346 HOH HOH . S 7 HOH B 42 1038 350 HOH HOH . S 7 HOH B 43 1039 351 HOH HOH . S 7 HOH B 44 1040 352 HOH HOH . S 7 HOH B 45 1041 354 HOH HOH . S 7 HOH B 46 1042 355 HOH HOH . S 7 HOH B 47 1043 371 HOH HOH . S 7 HOH B 48 1044 372 HOH HOH . S 7 HOH B 49 1045 377 HOH HOH . T 7 HOH C 1 999 327 HOH HOH . T 7 HOH C 2 1000 375 HOH HOH . T 7 HOH C 3 1001 204 HOH HOH . T 7 HOH C 4 1002 209 HOH HOH . T 7 HOH C 5 1003 210 HOH HOH . T 7 HOH C 6 1004 212 HOH HOH . T 7 HOH C 7 1005 216 HOH HOH . T 7 HOH C 8 1006 219 HOH HOH . T 7 HOH C 9 1007 221 HOH HOH . T 7 HOH C 10 1008 223 HOH HOH . T 7 HOH C 11 1009 227 HOH HOH . T 7 HOH C 12 1010 228 HOH HOH . T 7 HOH C 13 1011 241 HOH HOH . T 7 HOH C 14 1012 242 HOH HOH . T 7 HOH C 15 1013 243 HOH HOH . T 7 HOH C 16 1014 244 HOH HOH . T 7 HOH C 17 1015 249 HOH HOH . T 7 HOH C 18 1016 255 HOH HOH . T 7 HOH C 19 1017 260 HOH HOH . T 7 HOH C 20 1018 263 HOH HOH . T 7 HOH C 21 1019 266 HOH HOH . T 7 HOH C 22 1020 273 HOH HOH . T 7 HOH C 23 1021 276 HOH HOH . T 7 HOH C 24 1022 277 HOH HOH . T 7 HOH C 25 1023 281 HOH HOH . T 7 HOH C 26 1024 285 HOH HOH . T 7 HOH C 27 1025 287 HOH HOH . T 7 HOH C 28 1026 290 HOH HOH . T 7 HOH C 29 1027 292 HOH HOH . T 7 HOH C 30 1028 296 HOH HOH . T 7 HOH C 31 1029 299 HOH HOH . T 7 HOH C 32 1030 302 HOH HOH . T 7 HOH C 33 1031 308 HOH HOH . T 7 HOH C 34 1032 312 HOH HOH . T 7 HOH C 35 1033 314 HOH HOH . T 7 HOH C 36 1034 319 HOH HOH . T 7 HOH C 37 1035 324 HOH HOH . T 7 HOH C 38 1036 325 HOH HOH . T 7 HOH C 39 1037 328 HOH HOH . T 7 HOH C 40 1038 330 HOH HOH . T 7 HOH C 41 1039 340 HOH HOH . T 7 HOH C 42 1040 347 HOH HOH . T 7 HOH C 43 1041 225 HOH HOH . T 7 HOH C 44 1042 278 HOH HOH . T 7 HOH C 45 1043 279 HOH HOH . T 7 HOH C 46 1044 297 HOH HOH . T 7 HOH C 47 1045 344 HOH HOH . T 7 HOH C 48 1046 364 HOH HOH . T 7 HOH C 49 1047 358 HOH HOH . T 7 HOH C 50 1048 357 HOH HOH . T 7 HOH C 51 1049 359 HOH HOH . T 7 HOH C 52 1050 360 HOH HOH . T 7 HOH C 53 1051 361 HOH HOH . T 7 HOH C 54 1052 373 HOH HOH . T 7 HOH C 55 1053 378 HOH HOH . T 7 HOH C 56 1054 382 HOH HOH . T 7 HOH C 57 1055 383 HOH HOH . T 7 HOH C 58 1056 384 HOH HOH . T 7 HOH C 59 1057 387 HOH HOH . U 7 HOH D 1 1000 366 HOH HOH . U 7 HOH D 2 1001 367 HOH HOH . U 7 HOH D 3 1002 388 HOH HOH . U 7 HOH D 4 1003 201 HOH HOH . U 7 HOH D 5 1004 205 HOH HOH . U 7 HOH D 6 1005 220 HOH HOH . U 7 HOH D 7 1006 222 HOH HOH . U 7 HOH D 8 1007 224 HOH HOH . U 7 HOH D 9 1008 226 HOH HOH . U 7 HOH D 10 1009 229 HOH HOH . U 7 HOH D 11 1010 235 HOH HOH . U 7 HOH D 12 1011 237 HOH HOH . U 7 HOH D 13 1012 246 HOH HOH . U 7 HOH D 14 1013 248 HOH HOH . U 7 HOH D 15 1014 250 HOH HOH . U 7 HOH D 16 1015 252 HOH HOH . U 7 HOH D 17 1016 259 HOH HOH . U 7 HOH D 18 1017 270 HOH HOH . U 7 HOH D 19 1018 272 HOH HOH . U 7 HOH D 20 1019 275 HOH HOH . U 7 HOH D 21 1020 284 HOH HOH . U 7 HOH D 22 1021 286 HOH HOH . U 7 HOH D 23 1022 288 HOH HOH . U 7 HOH D 24 1023 289 HOH HOH . U 7 HOH D 25 1024 293 HOH HOH . U 7 HOH D 26 1025 294 HOH HOH . U 7 HOH D 27 1026 298 HOH HOH . U 7 HOH D 28 1027 304 HOH HOH . U 7 HOH D 29 1028 313 HOH HOH . U 7 HOH D 30 1029 315 HOH HOH . U 7 HOH D 31 1030 316 HOH HOH . U 7 HOH D 32 1031 321 HOH HOH . U 7 HOH D 33 1032 326 HOH HOH . U 7 HOH D 34 1033 331 HOH HOH . U 7 HOH D 35 1034 338 HOH HOH . U 7 HOH D 36 1035 348 HOH HOH . U 7 HOH D 37 1036 213 HOH HOH . U 7 HOH D 38 1037 247 HOH HOH . U 7 HOH D 39 1038 301 HOH HOH . U 7 HOH D 40 1039 334 HOH HOH . U 7 HOH D 41 1040 353 HOH HOH . U 7 HOH D 42 1041 362 HOH HOH . U 7 HOH D 43 1042 386 HOH HOH . U 7 HOH D 44 1043 214 HOH HOH . U 7 HOH D 45 1044 332 HOH HOH . U 7 HOH D 46 1045 363 HOH HOH . U 7 HOH D 47 1046 365 HOH HOH . U 7 HOH D 48 1047 368 HOH HOH . U 7 HOH D 49 1048 369 HOH HOH . U 7 HOH D 50 1049 374 HOH HOH . U 7 HOH D 51 1050 381 HOH HOH . U 7 HOH D 52 1051 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 93.582 109.74 46.983 1 69.29 ? C1 GOL 954 A 1 HETATM 2 O O1 GOL . . . H 5 92.31 110.402 46.867 1 66.89 ? O1 GOL 954 A 1 HETATM 3 C C2 GOL . . . H 5 93.769 109.37 48.476 1 74.23 ? C2 GOL 954 A 1 HETATM 4 O O2 GOL . . . H 5 94.983 108.71 48.747 1 76.98 ? O2 GOL 954 A 1 HETATM 5 C C3 GOL . . . H 5 92.623 108.484 48.994 1 75.02 ? C3 GOL 954 A 1 HETATM 6 O O3 GOL . . . H 5 92.389 108.684 50.366 1 74.86 ? O3 GOL 954 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #