data_1MAR # _model_server_result.job_id kSX8o1i-ADxVYQWdGrsQVA _model_server_result.datetime_utc '2024-11-20 00:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mar # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 1MAR # _exptl.entry_id 1MAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 64.47 _cell.angle_beta 76.77 _cell.angle_gamma 76.07 _cell.entry_id 1MAR _cell.length_a 47.64 _cell.length_b 48.04 _cell.length_c 40.48 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 1MAR _atom_sites.fract_transf_matrix[1][1] 0.020991 _atom_sites.fract_transf_matrix[1][2] -0.005206 _atom_sites.fract_transf_matrix[1][3] -0.003121 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021447 _atom_sites.fract_transf_matrix[2][3] -0.0093 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 350 350 NAP NAP . C 3 ZST A 1 351 351 ZST ZST . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 72.896 -36.249 5.323 1 12.51 ? PA NAP 350 A 1 HETATM 2 O O1A NAP . . . B 2 72.39 -37.621 5.186 1 12 ? O1A NAP 350 A 1 HETATM 3 O O2A NAP . . . B 2 73.944 -35.789 4.391 1 13.57 ? O2A NAP 350 A 1 HETATM 4 O O5B NAP . . . B 2 73.49 -36.108 6.803 1 13.3 ? O5B NAP 350 A 1 HETATM 5 C C5B NAP . . . B 2 73.924 -34.832 7.31 1 12.75 ? C5B NAP 350 A 1 HETATM 6 C C4B NAP . . . B 2 74.268 -34.877 8.8 1 12.37 ? C4B NAP 350 A 1 HETATM 7 O O4B NAP . . . B 2 75.333 -35.793 9.027 1 12.95 ? O4B NAP 350 A 1 HETATM 8 C C3B NAP . . . B 2 74.714 -33.525 9.339 1 12.53 ? C3B NAP 350 A 1 HETATM 9 O O3B NAP . . . B 2 74.09 -33.354 10.618 1 11.96 ? O3B NAP 350 A 1 HETATM 10 C C2B NAP . . . B 2 76.239 -33.613 9.488 1 14.07 ? C2B NAP 350 A 1 HETATM 11 O O2B NAP . . . B 2 76.686 -32.909 10.676 1 15.62 ? O2B NAP 350 A 1 HETATM 12 C C1B NAP . . . B 2 76.41 -35.125 9.686 1 13.64 ? C1B NAP 350 A 1 HETATM 13 N N9A NAP . . . B 2 77.68 -35.677 9.17 1 14.73 ? N9A NAP 350 A 1 HETATM 14 C C8A NAP . . . B 2 78.278 -35.502 7.948 1 17.28 ? C8A NAP 350 A 1 HETATM 15 N N7A NAP . . . B 2 79.376 -36.179 7.789 1 16.05 ? N7A NAP 350 A 1 HETATM 16 C C5A NAP . . . B 2 79.522 -36.855 8.991 1 16.45 ? C5A NAP 350 A 1 HETATM 17 C C6A NAP . . . B 2 80.505 -37.735 9.459 1 16.46 ? C6A NAP 350 A 1 HETATM 18 N N6A NAP . . . B 2 81.611 -38.026 8.769 1 14.31 ? N6A NAP 350 A 1 HETATM 19 N N1A NAP . . . B 2 80.339 -38.224 10.696 1 16.97 ? N1A NAP 350 A 1 HETATM 20 C C2A NAP . . . B 2 79.281 -37.861 11.412 1 14.84 ? C2A NAP 350 A 1 HETATM 21 N N3A NAP . . . B 2 78.297 -37.042 11.093 1 14.6 ? N3A NAP 350 A 1 HETATM 22 C C4A NAP . . . B 2 78.488 -36.562 9.84 1 15.5 ? C4A NAP 350 A 1 HETATM 23 O O3 NAP . . . B 2 71.608 -35.256 5.481 1 13.37 ? O3 NAP 350 A 1 HETATM 24 P PN NAP . . . B 2 70.958 -34.353 4.277 1 11.48 ? PN NAP 350 A 1 HETATM 25 O O1N NAP . . . B 2 71.485 -32.981 4.434 1 11.25 ? O1N NAP 350 A 1 HETATM 26 O O2N NAP . . . B 2 69.504 -34.555 4.384 1 13.05 ? O2N NAP 350 A 1 HETATM 27 O O5D NAP . . . B 2 71.319 -34.94 2.81 1 11.59 ? O5D NAP 350 A 1 HETATM 28 C C5D NAP . . . B 2 72.454 -34.469 2.082 1 10.92 ? C5D NAP 350 A 1 HETATM 29 C C4D NAP . . . B 2 72.133 -33.463 0.981 1 10.42 ? C4D NAP 350 A 1 HETATM 30 O O4D NAP . . . B 2 71.212 -34.007 0.029 1 11.2 ? O4D NAP 350 A 1 HETATM 31 C C3D NAP . . . B 2 71.448 -32.221 1.497 1 9.34 ? C3D NAP 350 A 1 HETATM 32 O O3D NAP . . . B 2 72.349 -31.317 2.119 1 9.48 ? O3D NAP 350 A 1 HETATM 33 C C2D NAP . . . B 2 70.834 -31.664 0.228 1 10.63 ? C2D NAP 350 A 1 HETATM 34 O O2D NAP . . . B 2 71.856 -30.996 -0.541 1 10.95 ? O2D NAP 350 A 1 HETATM 35 C C1D NAP . . . B 2 70.389 -32.943 -0.487 1 9.59 ? C1D NAP 350 A 1 HETATM 36 N N1N NAP . . . B 2 68.94 -33.243 -0.266 1 10.99 ? N1N NAP 350 A 1 HETATM 37 C C2N NAP . . . B 2 68.095 -33.102 -1.347 1 9.46 ? C2N NAP 350 A 1 HETATM 38 C C3N NAP . . . B 2 66.674 -33.239 -1.122 1 10.5 ? C3N NAP 350 A 1 HETATM 39 C C7N NAP . . . B 2 65.725 -33.114 -2.214 1 9.37 ? C7N NAP 350 A 1 HETATM 40 O O7N NAP . . . B 2 64.51 -33.185 -2.054 1 11.78 ? O7N NAP 350 A 1 HETATM 41 N N7N NAP . . . B 2 66.165 -32.93 -3.459 1 10 ? N7N NAP 350 A 1 HETATM 42 C C4N NAP . . . B 2 66.217 -33.506 0.13 1 10.26 ? C4N NAP 350 A 1 HETATM 43 C C5N NAP . . . B 2 67.072 -33.678 1.162 1 9.18 ? C5N NAP 350 A 1 HETATM 44 C C6N NAP . . . B 2 68.403 -33.554 0.971 1 10.56 ? C6N NAP 350 A 1 HETATM 45 P P2B NAP . . . B 2 77.446 -31.497 10.406 1 14.48 ? P2B NAP 350 A 1 HETATM 46 O O1X NAP . . . B 2 76.902 -30.961 9.14 1 14.5 ? O1X NAP 350 A 1 HETATM 47 O O2X NAP . . . B 2 77.07 -30.701 11.597 1 14.61 ? O2X NAP 350 A 1 HETATM 48 O O3X NAP . . . B 2 78.892 -31.82 10.373 1 14.96 ? O3X NAP 350 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #