data_1MBA # _model_server_result.job_id 4JhmV04ggXciuC5Kqco8jA _model_server_result.datetime_utc '2025-03-05 02:25:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":148}' # _entry.id 1MBA # _exptl.entry_id 1MBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MBA _cell.length_a 52.98 _cell.length_b 70.7 _cell.length_c 32.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.251 ? metalc ? metalc1 A NE2 HIS 96 A HIS 95 1_555 B FE HEM . A HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 122 n n CHA C4D HEM doub 123 n n CHA HHA HEM sing 124 n n CHB C4A HEM sing 125 n n CHB C1B HEM doub 126 n n CHB HHB HEM sing 127 n n CHC C4B HEM sing 128 n n CHC C1C HEM doub 129 n n CHC HHC HEM sing 130 n n CHD C4C HEM doub 131 n n CHD C1D HEM sing 132 n n CHD HHD HEM sing 133 n n C1A C2A HEM doub 134 n y C1A NA HEM sing 135 n y C2A C3A HEM sing 136 n y C2A CAA HEM sing 137 n n C3A C4A HEM doub 138 n y C3A CMA HEM sing 139 n n C4A NA HEM sing 140 n y CMA HMA HEM sing 141 n n CMA HMAA HEM sing 142 n n CMA HMAB HEM sing 143 n n CAA CBA HEM sing 144 n n CAA HAA HEM sing 145 n n CAA HAAA HEM sing 146 n n CBA CGA HEM sing 147 n n CBA HBA HEM sing 148 n n CBA HBAA HEM sing 149 n n CGA O1A HEM doub 150 n n CGA O2A HEM sing 151 n n C1B C2B HEM sing 152 n n C1B NB HEM sing 153 n n C2B C3B HEM doub 154 n n C2B CMB HEM sing 155 n n C3B C4B HEM sing 156 n n C3B CAB HEM sing 157 n n C4B NB HEM doub 158 n n CMB HMB HEM sing 159 n n CMB HMBA HEM sing 160 n n CMB HMBB HEM sing 161 n n CAB CBB HEM doub 162 n n CAB HAB HEM sing 163 n n CBB HBB HEM sing 164 n n CBB HBBA HEM sing 165 n n C1C C2C HEM sing 166 n y C1C NC HEM sing 167 n y C2C C3C HEM doub 168 n y C2C CMC HEM sing 169 n n C3C C4C HEM sing 170 n y C3C CAC HEM sing 171 n n C4C NC HEM sing 172 n y CMC HMC HEM sing 173 n n CMC HMCA HEM sing 174 n n CMC HMCB HEM sing 175 n n CAC CBC HEM doub 176 n n CAC HAC HEM sing 177 n n CBC HBC HEM sing 178 n n CBC HBCA HEM sing 179 n n C1D C2D HEM sing 180 n n C1D ND HEM doub 181 n n C2D C3D HEM doub 182 n n C2D CMD HEM sing 183 n n C3D C4D HEM sing 184 n n C3D CAD HEM sing 185 n n C4D ND HEM sing 186 n n CMD HMD HEM sing 187 n n CMD HMDA HEM sing 188 n n CMD HMDB HEM sing 189 n n CAD CBD HEM sing 190 n n CAD HAD HEM sing 191 n n CAD HADA HEM sing 192 n n CBD CGD HEM sing 193 n n CBD HBD HEM sing 194 n n CBD HBDA HEM sing 195 n n CGD O1D HEM doub 196 n n CGD O2D HEM sing 197 n n O2A H2A HEM sing 198 n n O2D H2D HEM sing 199 n n FE NA HEM sing 200 n n FE NB HEM sing 201 n n FE NC HEM sing 202 n n FE ND HEM sing 203 n n # _atom_sites.entry_id 1MBA _atom_sites.fract_transf_matrix[1][1] 0.018875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 148 148 HEM HEM . C 3 HOH A 1 149 149 HOH HOH . C 3 HOH A 2 150 150 HOH HOH . C 3 HOH A 3 151 151 HOH HOH . C 3 HOH A 4 152 152 HOH HOH . C 3 HOH A 5 153 153 HOH HOH . C 3 HOH A 6 155 155 HOH HOH . C 3 HOH A 7 156 156 HOH HOH . C 3 HOH A 8 157 157 HOH HOH . C 3 HOH A 9 158 158 HOH HOH . C 3 HOH A 10 159 159 HOH HOH . C 3 HOH A 11 160 160 HOH HOH . C 3 HOH A 12 161 161 HOH HOH . C 3 HOH A 13 162 162 HOH HOH . C 3 HOH A 14 163 163 HOH HOH . C 3 HOH A 15 164 164 HOH HOH . C 3 HOH A 16 165 165 HOH HOH . C 3 HOH A 17 166 166 HOH HOH . C 3 HOH A 18 167 167 HOH HOH . C 3 HOH A 19 168 168 HOH HOH . C 3 HOH A 20 169 169 HOH HOH . C 3 HOH A 21 170 170 HOH HOH . C 3 HOH A 22 171 171 HOH HOH . C 3 HOH A 23 172 172 HOH HOH . C 3 HOH A 24 173 173 HOH HOH . C 3 HOH A 25 174 174 HOH HOH . C 3 HOH A 26 176 176 HOH HOH . C 3 HOH A 27 177 177 HOH HOH . C 3 HOH A 28 178 178 HOH HOH . C 3 HOH A 29 179 179 HOH HOH . C 3 HOH A 30 180 180 HOH HOH . C 3 HOH A 31 181 181 HOH HOH . C 3 HOH A 32 182 182 HOH HOH . C 3 HOH A 33 183 183 HOH HOH . C 3 HOH A 34 184 184 HOH HOH . C 3 HOH A 35 187 187 HOH HOH . C 3 HOH A 36 188 188 HOH HOH . C 3 HOH A 37 189 189 HOH HOH . C 3 HOH A 38 190 190 HOH HOH . C 3 HOH A 39 191 191 HOH HOH . C 3 HOH A 40 193 193 HOH HOH . C 3 HOH A 41 194 194 HOH HOH . C 3 HOH A 42 195 195 HOH HOH . C 3 HOH A 43 196 196 HOH HOH . C 3 HOH A 44 197 197 HOH HOH . C 3 HOH A 45 198 198 HOH HOH . C 3 HOH A 46 199 199 HOH HOH . C 3 HOH A 47 200 200 HOH HOH . C 3 HOH A 48 201 201 HOH HOH . C 3 HOH A 49 202 202 HOH HOH . C 3 HOH A 50 203 203 HOH HOH . C 3 HOH A 51 204 204 HOH HOH . C 3 HOH A 52 205 205 HOH HOH . C 3 HOH A 53 207 207 HOH HOH . C 3 HOH A 54 208 208 HOH HOH . C 3 HOH A 55 209 209 HOH HOH . C 3 HOH A 56 211 211 HOH HOH . C 3 HOH A 57 213 213 HOH HOH . C 3 HOH A 58 214 214 HOH HOH . C 3 HOH A 59 215 215 HOH HOH . C 3 HOH A 60 216 216 HOH HOH . C 3 HOH A 61 217 217 HOH HOH . C 3 HOH A 62 218 218 HOH HOH . C 3 HOH A 63 219 219 HOH HOH . C 3 HOH A 64 220 220 HOH HOH . C 3 HOH A 65 222 222 HOH HOH . C 3 HOH A 66 223 223 HOH HOH . C 3 HOH A 67 224 224 HOH HOH . C 3 HOH A 68 225 225 HOH HOH . C 3 HOH A 69 226 226 HOH HOH . C 3 HOH A 70 228 228 HOH HOH . C 3 HOH A 71 229 229 HOH HOH . C 3 HOH A 72 230 230 HOH HOH . C 3 HOH A 73 231 231 HOH HOH . C 3 HOH A 74 232 232 HOH HOH . C 3 HOH A 75 234 234 HOH HOH . C 3 HOH A 76 235 235 HOH HOH . C 3 HOH A 77 236 236 HOH HOH . C 3 HOH A 78 237 237 HOH HOH . C 3 HOH A 79 238 238 HOH HOH . C 3 HOH A 80 239 239 HOH HOH . C 3 HOH A 81 240 240 HOH HOH . C 3 HOH A 82 241 241 HOH HOH . C 3 HOH A 83 242 242 HOH HOH . C 3 HOH A 84 243 243 HOH HOH . C 3 HOH A 85 244 244 HOH HOH . C 3 HOH A 86 246 246 HOH HOH . C 3 HOH A 87 250 250 HOH HOH . C 3 HOH A 88 251 251 HOH HOH . C 3 HOH A 89 252 252 HOH HOH . C 3 HOH A 90 260 260 HOH HOH . C 3 HOH A 91 261 261 HOH HOH . C 3 HOH A 92 262 262 HOH HOH . C 3 HOH A 93 263 263 HOH HOH . C 3 HOH A 94 264 264 HOH HOH . C 3 HOH A 95 265 265 HOH HOH . C 3 HOH A 96 266 266 HOH HOH . C 3 HOH A 97 267 267 HOH HOH . C 3 HOH A 98 268 268 HOH HOH . C 3 HOH A 99 269 269 HOH HOH . C 3 HOH A 100 270 270 HOH HOH . C 3 HOH A 101 271 271 HOH HOH . C 3 HOH A 102 272 272 HOH HOH . C 3 HOH A 103 273 273 HOH HOH . C 3 HOH A 104 274 274 HOH HOH . C 3 HOH A 105 275 275 HOH HOH . C 3 HOH A 106 276 276 HOH HOH . C 3 HOH A 107 277 277 HOH HOH . C 3 HOH A 108 278 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -59.146 -34.369 -32.468 1 22.86 ? CHA HEM 148 A 1 HETATM 2 C CHB HEM . . . B 2 -59.255 -37.964 -29.145 1 7.85 ? CHB HEM 148 A 1 HETATM 3 C CHC HEM . . . B 2 -57.368 -41.019 -32.364 1 5.14 ? CHC HEM 148 A 1 HETATM 4 C CHD HEM . . . B 2 -57.429 -37.522 -35.657 1 15.76 ? CHD HEM 148 A 1 HETATM 5 C C1A HEM . . . B 2 -59.301 -35.067 -31.256 1 17.31 ? C1A HEM 148 A 1 HETATM 6 C C2A HEM . . . B 2 -59.935 -34.518 -30.048 1 24.75 ? C2A HEM 148 A 1 HETATM 7 C C3A HEM . . . B 2 -59.954 -35.527 -29.138 1 7.4 ? C3A HEM 148 A 1 HETATM 8 C C4A HEM . . . B 2 -59.389 -36.705 -29.767 1 9.94 ? C4A HEM 148 A 1 HETATM 9 C CMA HEM . . . B 2 -60.447 -35.527 -27.669 1 11.14 ? CMA HEM 148 A 1 HETATM 10 C CAA HEM . . . B 2 -60.435 -33.039 -29.935 1 21.93 ? CAA HEM 148 A 1 HETATM 11 C CBA HEM . . . B 2 -59.354 -32.133 -29.34 1 15.19 ? CBA HEM 148 A 1 HETATM 12 C CGA HEM . . . B 2 -59.792 -30.705 -29.095 1 15 ? CGA HEM 148 A 1 HETATM 13 O O1A HEM . . . B 2 -60.165 -30.379 -27.953 1 15 ? O1A HEM 148 A 1 HETATM 14 O O2A HEM . . . B 2 -59.837 -29.911 -30.053 1 15 ? O2A HEM 148 A 1 HETATM 15 C C1B HEM . . . B 2 -58.763 -39.108 -29.716 1 8.86 ? C1B HEM 148 A 1 HETATM 16 C C2B HEM . . . B 2 -58.593 -40.379 -29.038 1 6.27 ? C2B HEM 148 A 1 HETATM 17 C C3B HEM . . . B 2 -57.942 -41.207 -29.869 1 5.75 ? C3B HEM 148 A 1 HETATM 18 C C4B HEM . . . B 2 -57.894 -40.49 -31.186 1 7.67 ? C4B HEM 148 A 1 HETATM 19 C CMB HEM . . . B 2 -59.071 -40.672 -27.603 1 10.24 ? CMB HEM 148 A 1 HETATM 20 C CAB HEM . . . B 2 -57.665 -42.719 -29.634 1 14.99 ? CAB HEM 148 A 1 HETATM 21 C CBB HEM . . . B 2 -56.475 -43.277 -29.484 1 22.05 ? CBB HEM 148 A 1 HETATM 22 C C1C HEM . . . B 2 -57.258 -40.351 -33.549 1 2.76 ? C1C HEM 148 A 1 HETATM 23 C C2C HEM . . . B 2 -56.67 -40.895 -34.803 1 6.8 ? C2C HEM 148 A 1 HETATM 24 C C3C HEM . . . B 2 -56.668 -39.854 -35.665 1 8.72 ? C3C HEM 148 A 1 HETATM 25 C C4C HEM . . . B 2 -57.239 -38.712 -35.001 1 24.13 ? C4C HEM 148 A 1 HETATM 26 C CMC HEM . . . B 2 -56.159 -42.331 -35.011 1 12.5 ? CMC HEM 148 A 1 HETATM 27 C CAC HEM . . . B 2 -56.189 -39.794 -37.116 1 10.71 ? CAC HEM 148 A 1 HETATM 28 C CBC HEM . . . B 2 -55.681 -40.896 -37.632 1 18.8 ? CBC HEM 148 A 1 HETATM 29 C C1D HEM . . . B 2 -57.938 -36.364 -35.121 1 7.89 ? C1D HEM 148 A 1 HETATM 30 C C2D HEM . . . B 2 -58.055 -35.1 -35.81 1 5.83 ? C2D HEM 148 A 1 HETATM 31 C C3D HEM . . . B 2 -58.514 -34.221 -34.91 1 14.59 ? C3D HEM 148 A 1 HETATM 32 C C4D HEM . . . B 2 -58.728 -34.937 -33.672 1 16.18 ? C4D HEM 148 A 1 HETATM 33 C CMD HEM . . . B 2 -57.602 -34.799 -37.262 1 7.79 ? CMD HEM 148 A 1 HETATM 34 C CAD HEM . . . B 2 -58.752 -32.719 -35.109 1 15.73 ? CAD HEM 148 A 1 HETATM 35 C CBD HEM . . . B 2 -58.043 -31.795 -34.104 1 43.65 ? CBD HEM 148 A 1 HETATM 36 C CGD HEM . . . B 2 -56.868 -31.239 -34.828 1 32.62 ? CGD HEM 148 A 1 HETATM 37 O O1D HEM . . . B 2 -56.189 -32.061 -35.454 1 49.07 ? O1D HEM 148 A 1 HETATM 38 O O2D HEM . . . B 2 -56.558 -30.043 -34.733 1 44.21 ? O2D HEM 148 A 1 HETATM 39 N NA HEM . . . B 2 -58.999 -36.404 -31.058 1 14.99 ? NA HEM 148 A 1 HETATM 40 N NB HEM . . . B 2 -58.422 -39.229 -31.064 1 11.71 ? NB HEM 148 A 1 HETATM 41 N NC HEM . . . B 2 -57.597 -39.021 -33.699 1 8.29 ? NC HEM 148 A 1 HETATM 42 N ND HEM . . . B 2 -58.396 -36.25 -33.838 1 12.13 ? ND HEM 148 A 1 HETATM 43 FE FE HEM . . . B 2 -58.541 -37.782 -32.465 1 10.47 ? FE HEM 148 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #