data_1MBB # _model_server_result.job_id TL_bupNudhTBMg89tvdV0g _model_server_result.datetime_utc '2024-12-23 04:38:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1MBB # _exptl.entry_id 1MBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MBB _cell.length_a 50 _cell.length_b 50 _cell.length_c 264.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 163 n n PA O2A FAD sing 164 n n PA O5B FAD sing 165 n n PA O3P FAD sing 166 n n O2A HOA2 FAD sing 167 n n O5B C5B FAD sing 168 n n C5B C4B FAD sing 169 n n C5B H51A FAD sing 170 n n C5B H52A FAD sing 171 n n C4B O4B FAD sing 172 n n C4B C3B FAD sing 173 n n C4B H4B FAD sing 174 n n O4B C1B FAD sing 175 n n C3B O3B FAD sing 176 n n C3B C2B FAD sing 177 n n C3B H3B FAD sing 178 n n O3B HO3A FAD sing 179 n n C2B O2B FAD sing 180 n n C2B C1B FAD sing 181 n n C2B H2B FAD sing 182 n n O2B HO2A FAD sing 183 n n C1B N9A FAD sing 184 n n C1B H1B FAD sing 185 n n N9A C8A FAD sing 186 n y N9A C4A FAD sing 187 n y C8A N7A FAD doub 188 n y C8A H8A FAD sing 189 n n N7A C5A FAD sing 190 n y C5A C6A FAD sing 191 n y C5A C4A FAD doub 192 n y C6A N6A FAD sing 193 n n C6A N1A FAD doub 194 n y N6A H61A FAD sing 195 n n N6A H62A FAD sing 196 n n N1A C2A FAD sing 197 n y C2A N3A FAD doub 198 n y C2A H2A FAD sing 199 n n N3A C4A FAD sing 200 n y N1 C2 FAD sing 201 n n N1 C10 FAD doub 202 n n C2 O2 FAD doub 203 n n C2 N3 FAD sing 204 n n N3 C4 FAD sing 205 n n N3 HN3 FAD sing 206 n n C4 O4 FAD doub 207 n n C4 C4X FAD sing 208 n n C4X N5 FAD doub 209 n n C4X C10 FAD sing 210 n n N5 C5X FAD sing 211 n n C5X C6 FAD doub 212 n y C5X C9A FAD sing 213 n y C6 C7 FAD sing 214 n y C6 H6 FAD sing 215 n n C7 C7M FAD sing 216 n n C7 C8 FAD doub 217 n y C7M HM71 FAD sing 218 n n C7M HM72 FAD sing 219 n n C7M HM73 FAD sing 220 n n C8 C8M FAD sing 221 n n C8 C9 FAD sing 222 n y C8M HM81 FAD sing 223 n n C8M HM82 FAD sing 224 n n C8M HM83 FAD sing 225 n n C9 C9A FAD doub 226 n y C9 H9 FAD sing 227 n n C9A N10 FAD sing 228 n n N10 C10 FAD sing 229 n n N10 C1' FAD sing 230 n n C1' C2' FAD sing 231 n n C1' "H1'1" FAD sing 232 n n C1' "H1'2" FAD sing 233 n n C2' O2' FAD sing 234 n n C2' C3' FAD sing 235 n n C2' H2' FAD sing 236 n n O2' HO2' FAD sing 237 n n C3' O3' FAD sing 238 n n C3' C4' FAD sing 239 n n C3' H3' FAD sing 240 n n O3' HO3' FAD sing 241 n n C4' O4' FAD sing 242 n n C4' C5' FAD sing 243 n n C4' H4' FAD sing 244 n n O4' HO4' FAD sing 245 n n C5' O5' FAD sing 246 n n C5' "H5'1" FAD sing 247 n n C5' "H5'2" FAD sing 248 n n O5' P FAD sing 249 n n P O1P FAD doub 250 n n P O2P FAD sing 251 n n P O3P FAD sing 252 n n O2P HOP2 FAD sing 253 n n # _atom_sites.entry_id 1MBB _atom_sites.fract_transf_matrix[1][1] 0.02 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EEB A 1 402 402 EEB EEB . C 3 FAD A 1 401 401 FAD FAD . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 503 503 HOH HOH . D 4 HOH A 5 504 504 HOH HOH . D 4 HOH A 6 505 505 HOH HOH . D 4 HOH A 7 506 506 HOH HOH . D 4 HOH A 8 507 507 HOH HOH . D 4 HOH A 9 508 508 HOH HOH . D 4 HOH A 10 509 509 HOH HOH . D 4 HOH A 11 510 510 HOH HOH . D 4 HOH A 12 511 511 HOH HOH . D 4 HOH A 13 512 512 HOH HOH . D 4 HOH A 14 513 513 HOH HOH . D 4 HOH A 15 514 514 HOH HOH . D 4 HOH A 16 515 515 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 517 517 HOH HOH . D 4 HOH A 19 518 518 HOH HOH . D 4 HOH A 20 519 519 HOH HOH . D 4 HOH A 21 520 520 HOH HOH . D 4 HOH A 22 521 521 HOH HOH . D 4 HOH A 23 522 522 HOH HOH . D 4 HOH A 24 523 523 HOH HOH . D 4 HOH A 25 524 524 HOH HOH . D 4 HOH A 26 525 525 HOH HOH . D 4 HOH A 27 526 526 HOH HOH . D 4 HOH A 28 527 527 HOH HOH . D 4 HOH A 29 528 528 HOH HOH . D 4 HOH A 30 529 529 HOH HOH . D 4 HOH A 31 530 530 HOH HOH . D 4 HOH A 32 531 531 HOH HOH . D 4 HOH A 33 532 532 HOH HOH . D 4 HOH A 34 533 533 HOH HOH . D 4 HOH A 35 534 534 HOH HOH . D 4 HOH A 36 535 535 HOH HOH . D 4 HOH A 37 536 536 HOH HOH . D 4 HOH A 38 537 537 HOH HOH . D 4 HOH A 39 538 538 HOH HOH . D 4 HOH A 40 539 539 HOH HOH . D 4 HOH A 41 540 540 HOH HOH . D 4 HOH A 42 541 541 HOH HOH . D 4 HOH A 43 542 542 HOH HOH . D 4 HOH A 44 543 543 HOH HOH . D 4 HOH A 45 544 544 HOH HOH . D 4 HOH A 46 545 545 HOH HOH . D 4 HOH A 47 546 546 HOH HOH . D 4 HOH A 48 547 547 HOH HOH . D 4 HOH A 49 548 548 HOH HOH . D 4 HOH A 50 549 549 HOH HOH . D 4 HOH A 51 550 550 HOH HOH . D 4 HOH A 52 551 551 HOH HOH . D 4 HOH A 53 552 552 HOH HOH . D 4 HOH A 54 553 553 HOH HOH . D 4 HOH A 55 554 554 HOH HOH . D 4 HOH A 56 555 555 HOH HOH . D 4 HOH A 57 556 556 HOH HOH . D 4 HOH A 58 557 557 HOH HOH . D 4 HOH A 59 558 558 HOH HOH . D 4 HOH A 60 559 559 HOH HOH . D 4 HOH A 61 560 560 HOH HOH . D 4 HOH A 62 561 561 HOH HOH . D 4 HOH A 63 562 562 HOH HOH . D 4 HOH A 64 563 563 HOH HOH . D 4 HOH A 65 564 564 HOH HOH . D 4 HOH A 66 565 565 HOH HOH . D 4 HOH A 67 566 566 HOH HOH . D 4 HOH A 68 567 567 HOH HOH . D 4 HOH A 69 568 568 HOH HOH . D 4 HOH A 70 569 569 HOH HOH . D 4 HOH A 71 570 570 HOH HOH . D 4 HOH A 72 571 571 HOH HOH . D 4 HOH A 73 572 572 HOH HOH . D 4 HOH A 74 573 573 HOH HOH . D 4 HOH A 75 574 574 HOH HOH . D 4 HOH A 76 575 575 HOH HOH . D 4 HOH A 77 576 576 HOH HOH . D 4 HOH A 78 577 577 HOH HOH . D 4 HOH A 79 578 578 HOH HOH . D 4 HOH A 80 579 579 HOH HOH . D 4 HOH A 81 580 580 HOH HOH . D 4 HOH A 82 581 581 HOH HOH . D 4 HOH A 83 582 582 HOH HOH . D 4 HOH A 84 583 583 HOH HOH . D 4 HOH A 85 584 584 HOH HOH . D 4 HOH A 86 585 585 HOH HOH . D 4 HOH A 87 586 586 HOH HOH . D 4 HOH A 88 587 587 HOH HOH . D 4 HOH A 89 588 588 HOH HOH . D 4 HOH A 90 589 589 HOH HOH . D 4 HOH A 91 590 590 HOH HOH . D 4 HOH A 92 591 591 HOH HOH . D 4 HOH A 93 592 592 HOH HOH . D 4 HOH A 94 593 593 HOH HOH . D 4 HOH A 95 594 594 HOH HOH . D 4 HOH A 96 595 595 HOH HOH . D 4 HOH A 97 596 596 HOH HOH . D 4 HOH A 98 597 597 HOH HOH . D 4 HOH A 99 598 598 HOH HOH . D 4 HOH A 100 599 599 HOH HOH . D 4 HOH A 101 600 600 HOH HOH . D 4 HOH A 102 601 601 HOH HOH . D 4 HOH A 103 602 602 HOH HOH . D 4 HOH A 104 603 603 HOH HOH . D 4 HOH A 105 604 604 HOH HOH . D 4 HOH A 106 605 605 HOH HOH . D 4 HOH A 107 606 606 HOH HOH . D 4 HOH A 108 607 607 HOH HOH . D 4 HOH A 109 608 608 HOH HOH . D 4 HOH A 110 609 609 HOH HOH . D 4 HOH A 111 610 610 HOH HOH . D 4 HOH A 112 611 611 HOH HOH . D 4 HOH A 113 612 612 HOH HOH . D 4 HOH A 114 613 613 HOH HOH . D 4 HOH A 115 614 614 HOH HOH . D 4 HOH A 116 615 615 HOH HOH . D 4 HOH A 117 616 616 HOH HOH . D 4 HOH A 118 617 617 HOH HOH . D 4 HOH A 119 618 618 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 0.09 4.115 15.698 1 3.71 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . C 3 -0.35 2.867 14.961 1 8.22 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . C 3 1.597 4.279 15.805 1 6.98 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . C 3 -0.563 4.142 17.156 1 5.06 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . C 3 -0.327 5.286 17.971 1 7.75 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . C 3 -0.888 5.146 19.38 1 9.43 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . C 3 -2.337 5.323 19.328 1 11.79 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . C 3 -0.706 3.812 20.056 1 9.46 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . C 3 -0.605 4.071 21.493 1 8.93 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . C 3 -1.967 3.023 19.658 1 10.16 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . C 3 -2.354 1.995 20.566 1 14.02 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . C 3 -3.032 4.093 19.566 1 9.23 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . C 3 -3.99 4.006 18.51 1 7.16 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . C 3 -3.513 3.867 17.244 1 7.07 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . C 3 -4.736 3.61 16.506 1 5.59 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . C 3 -5.845 3.558 17.514 1 4.78 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . C 3 -7.307 3.33 17.596 1 4.7 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . C 3 -8.05 3.079 16.519 1 3.89 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . C 3 -7.929 3.354 18.821 1 2 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . C 3 -7.18 3.581 19.918 1 2.14 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . C 3 -5.911 3.813 19.969 1 2.13 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . C 3 -5.318 3.782 18.717 1 4.36 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . C 3 3.195 13.557 13.897 1 2.48 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . C 3 2.767 14.864 13.921 1 3.65 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . C 3 2.037 15.278 14.78 1 4.7 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . C 3 3.195 15.704 12.962 1 4.49 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . C 3 3.978 15.349 11.943 1 5.48 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . C 3 4.318 16.128 11.063 1 4 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . C 3 4.483 13.919 11.885 1 4.13 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . C 3 5.327 13.474 10.89 1 5.36 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . C 3 5.801 12.189 10.885 1 4.47 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . C 3 6.703 11.78 9.894 1 3.56 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . C 3 7.164 10.459 9.85 1 2.11 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . C 3 8.163 10.069 8.799 1 2.07 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . C 3 6.683 9.541 10.808 1 2.89 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . C 3 7.224 8.138 10.61 1 2.04 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . C 3 5.804 9.986 11.783 1 2.09 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . C 3 5.363 11.324 11.849 1 3.68 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . C 3 4.481 11.778 12.864 1 2.34 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . C 3 4.012 13.066 12.944 1 2.71 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . C 3 4.011 10.889 13.969 1 2.82 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . C 3 2.835 9.974 13.549 1 3.5 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . C 3 2.516 10.026 12.168 1 2.65 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . C 3 1.603 10.285 14.442 1 5.07 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . C 3 1.848 10.019 15.809 1 7.62 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . C 3 0.326 9.558 13.954 1 5.87 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . C 3 -0.865 10.149 14.464 1 5.23 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . C 3 0.359 8.046 14.24 1 4.21 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . C 3 -0.515 7.406 13.319 1 4.39 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . C 3 -0.545 5.863 13.445 1 6.83 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . C 3 -1.843 5.421 12.783 1 4.17 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . C 3 0.677 5.33 12.741 1 6.9 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . C 3 -0.533 5.376 15.013 1 5.26 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #