data_1MBB # _model_server_result.job_id 8QOQP54ANI6VsWJXZUmWLg _model_server_result.datetime_utc '2024-12-23 04:53:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":402}' # _entry.id 1MBB # _exptl.entry_id 1MBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 693.443 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'URIDINE-DIPHOSPHATE-3(N-ACETYLGLUCOSAMINYL)BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MBB _cell.length_a 50 _cell.length_b 50 _cell.length_c 264.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H33 N3 O19 P2' _chem_comp.formula_weight 693.443 _chem_comp.id EEB _chem_comp.mon_nstd_flag . _chem_comp.name 'URIDINE-DIPHOSPHATE-3(N-ACETYLGLUCOSAMINYL)BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1U C2U EEB sing 83 n n N1U C6U EEB sing 84 n n N1U C1D EEB sing 85 n n C2U N3U EEB sing 86 n n C2U O2U EEB doub 87 n n N3U C4U EEB sing 88 n n N3U HN3U EEB sing 89 n n C4U C5U EEB sing 90 n n C4U O4U EEB doub 91 n n C5U C6U EEB doub 92 n n C5U H5U EEB sing 93 n n C6U H6U EEB sing 94 n n C1D C2D EEB sing 95 n n C1D O4D EEB sing 96 n n C1D H1D EEB sing 97 n n C2D O2D EEB sing 98 n n C2D C3D EEB sing 99 n n C2D H2D EEB sing 100 n n O2D HO2U EEB sing 101 n n C3D C4D EEB sing 102 n n C3D O3D EEB sing 103 n n C3D H3D EEB sing 104 n n C4D O4D EEB sing 105 n n C4D C5D EEB sing 106 n n C4D H4D EEB sing 107 n n O3D HO3U EEB sing 108 n n C5D O5D EEB sing 109 n n C5D "H5'1" EEB sing 110 n n C5D "H5'2" EEB sing 111 n n O5D PA EEB sing 112 n n PA O1A EEB doub 113 n n PA O2A EEB sing 114 n n PA O3A EEB sing 115 n n O2A HOA2 EEB sing 116 n n O3A PB EEB sing 117 n n PB O1B EEB doub 118 n n PB O2B EEB sing 119 n n PB O1 EEB sing 120 n n O2B HOB2 EEB sing 121 n n C1 C2 EEB sing 122 n n C1 O1 EEB sing 123 n n C1 O5 EEB sing 124 n n C1 H1 EEB sing 125 n n C2 C3 EEB sing 126 n n C2 N2 EEB sing 127 n n C2 H2 EEB sing 128 n n C3 C4 EEB sing 129 n n C3 O3 EEB sing 130 n n C3 H3 EEB sing 131 n n C4 C5 EEB sing 132 n n C4 O4 EEB sing 133 n n C4 H4 EEB sing 134 n n C5 C6 EEB sing 135 n n C5 O5 EEB sing 136 n n C5 H5 EEB sing 137 n n C6 O6 EEB sing 138 n n C6 H61 EEB sing 139 n n C6 H62 EEB sing 140 n n C7 C8 EEB sing 141 n n C7 N2 EEB sing 142 n n C7 O7 EEB doub 143 n n C8 H81 EEB sing 144 n n C8 H82 EEB sing 145 n n C8 H83 EEB sing 146 n n N2 HN2 EEB sing 147 n n O3 C2E EEB sing 148 n n O4 HO4 EEB sing 149 n n O6 HO6 EEB sing 150 n n C1E C2E EEB sing 151 n n C1E O1E EEB doub 152 n n C1E O2E EEB sing 153 n n C2E C3E EEB sing 154 n n C2E H2E EEB sing 155 n n C3E C4E EEB sing 156 n n C3E HE31 EEB sing 157 n n C3E HE32 EEB sing 158 n n C4E HE41 EEB sing 159 n n C4E HE42 EEB sing 160 n n C4E HE43 EEB sing 161 n n O2E HO2E EEB sing 162 n n # _atom_sites.entry_id 1MBB _atom_sites.fract_transf_matrix[1][1] 0.02 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EEB A 1 402 402 EEB EEB . C 3 FAD A 1 401 401 FAD FAD . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 503 503 HOH HOH . D 4 HOH A 5 504 504 HOH HOH . D 4 HOH A 6 505 505 HOH HOH . D 4 HOH A 7 506 506 HOH HOH . D 4 HOH A 8 507 507 HOH HOH . D 4 HOH A 9 508 508 HOH HOH . D 4 HOH A 10 509 509 HOH HOH . D 4 HOH A 11 510 510 HOH HOH . D 4 HOH A 12 511 511 HOH HOH . D 4 HOH A 13 512 512 HOH HOH . D 4 HOH A 14 513 513 HOH HOH . D 4 HOH A 15 514 514 HOH HOH . D 4 HOH A 16 515 515 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 517 517 HOH HOH . D 4 HOH A 19 518 518 HOH HOH . D 4 HOH A 20 519 519 HOH HOH . D 4 HOH A 21 520 520 HOH HOH . D 4 HOH A 22 521 521 HOH HOH . D 4 HOH A 23 522 522 HOH HOH . D 4 HOH A 24 523 523 HOH HOH . D 4 HOH A 25 524 524 HOH HOH . D 4 HOH A 26 525 525 HOH HOH . D 4 HOH A 27 526 526 HOH HOH . D 4 HOH A 28 527 527 HOH HOH . D 4 HOH A 29 528 528 HOH HOH . D 4 HOH A 30 529 529 HOH HOH . D 4 HOH A 31 530 530 HOH HOH . D 4 HOH A 32 531 531 HOH HOH . D 4 HOH A 33 532 532 HOH HOH . D 4 HOH A 34 533 533 HOH HOH . D 4 HOH A 35 534 534 HOH HOH . D 4 HOH A 36 535 535 HOH HOH . D 4 HOH A 37 536 536 HOH HOH . D 4 HOH A 38 537 537 HOH HOH . D 4 HOH A 39 538 538 HOH HOH . D 4 HOH A 40 539 539 HOH HOH . D 4 HOH A 41 540 540 HOH HOH . D 4 HOH A 42 541 541 HOH HOH . D 4 HOH A 43 542 542 HOH HOH . D 4 HOH A 44 543 543 HOH HOH . D 4 HOH A 45 544 544 HOH HOH . D 4 HOH A 46 545 545 HOH HOH . D 4 HOH A 47 546 546 HOH HOH . D 4 HOH A 48 547 547 HOH HOH . D 4 HOH A 49 548 548 HOH HOH . D 4 HOH A 50 549 549 HOH HOH . D 4 HOH A 51 550 550 HOH HOH . D 4 HOH A 52 551 551 HOH HOH . D 4 HOH A 53 552 552 HOH HOH . D 4 HOH A 54 553 553 HOH HOH . D 4 HOH A 55 554 554 HOH HOH . D 4 HOH A 56 555 555 HOH HOH . D 4 HOH A 57 556 556 HOH HOH . D 4 HOH A 58 557 557 HOH HOH . D 4 HOH A 59 558 558 HOH HOH . D 4 HOH A 60 559 559 HOH HOH . D 4 HOH A 61 560 560 HOH HOH . D 4 HOH A 62 561 561 HOH HOH . D 4 HOH A 63 562 562 HOH HOH . D 4 HOH A 64 563 563 HOH HOH . D 4 HOH A 65 564 564 HOH HOH . D 4 HOH A 66 565 565 HOH HOH . D 4 HOH A 67 566 566 HOH HOH . D 4 HOH A 68 567 567 HOH HOH . D 4 HOH A 69 568 568 HOH HOH . D 4 HOH A 70 569 569 HOH HOH . D 4 HOH A 71 570 570 HOH HOH . D 4 HOH A 72 571 571 HOH HOH . D 4 HOH A 73 572 572 HOH HOH . D 4 HOH A 74 573 573 HOH HOH . D 4 HOH A 75 574 574 HOH HOH . D 4 HOH A 76 575 575 HOH HOH . D 4 HOH A 77 576 576 HOH HOH . D 4 HOH A 78 577 577 HOH HOH . D 4 HOH A 79 578 578 HOH HOH . D 4 HOH A 80 579 579 HOH HOH . D 4 HOH A 81 580 580 HOH HOH . D 4 HOH A 82 581 581 HOH HOH . D 4 HOH A 83 582 582 HOH HOH . D 4 HOH A 84 583 583 HOH HOH . D 4 HOH A 85 584 584 HOH HOH . D 4 HOH A 86 585 585 HOH HOH . D 4 HOH A 87 586 586 HOH HOH . D 4 HOH A 88 587 587 HOH HOH . D 4 HOH A 89 588 588 HOH HOH . D 4 HOH A 90 589 589 HOH HOH . D 4 HOH A 91 590 590 HOH HOH . D 4 HOH A 92 591 591 HOH HOH . D 4 HOH A 93 592 592 HOH HOH . D 4 HOH A 94 593 593 HOH HOH . D 4 HOH A 95 594 594 HOH HOH . D 4 HOH A 96 595 595 HOH HOH . D 4 HOH A 97 596 596 HOH HOH . D 4 HOH A 98 597 597 HOH HOH . D 4 HOH A 99 598 598 HOH HOH . D 4 HOH A 100 599 599 HOH HOH . D 4 HOH A 101 600 600 HOH HOH . D 4 HOH A 102 601 601 HOH HOH . D 4 HOH A 103 602 602 HOH HOH . D 4 HOH A 104 603 603 HOH HOH . D 4 HOH A 105 604 604 HOH HOH . D 4 HOH A 106 605 605 HOH HOH . D 4 HOH A 107 606 606 HOH HOH . D 4 HOH A 108 607 607 HOH HOH . D 4 HOH A 109 608 608 HOH HOH . D 4 HOH A 110 609 609 HOH HOH . D 4 HOH A 111 610 610 HOH HOH . D 4 HOH A 112 611 611 HOH HOH . D 4 HOH A 113 612 612 HOH HOH . D 4 HOH A 114 613 613 HOH HOH . D 4 HOH A 115 614 614 HOH HOH . D 4 HOH A 116 615 615 HOH HOH . D 4 HOH A 117 616 616 HOH HOH . D 4 HOH A 118 617 617 HOH HOH . D 4 HOH A 119 618 618 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1U EEB . . . B 2 16.497 22.571 13.942 1 11.55 ? N1U EEB 402 A 1 HETATM 2 C C2U EEB . . . B 2 17.88 22.647 13.863 1 12.83 ? C2U EEB 402 A 1 HETATM 3 N N3U EEB . . . B 2 18.529 21.488 13.661 1 11.04 ? N3U EEB 402 A 1 HETATM 4 C C4U EEB . . . B 2 17.948 20.281 13.564 1 10.33 ? C4U EEB 402 A 1 HETATM 5 C C5U EEB . . . B 2 16.468 20.169 13.654 1 10.32 ? C5U EEB 402 A 1 HETATM 6 C C6U EEB . . . B 2 15.751 21.304 13.863 1 9.8 ? C6U EEB 402 A 1 HETATM 7 O O2U EEB . . . B 2 18.46 23.704 13.968 1 14.6 ? O2U EEB 402 A 1 HETATM 8 O O4U EEB . . . B 2 18.597 19.257 13.41 1 9.61 ? O4U EEB 402 A 1 HETATM 9 C C1D EEB . . . B 2 15.752 23.807 14.149 1 11.89 ? C1D EEB 402 A 1 HETATM 10 C C2D EEB . . . B 2 15.119 24.407 12.896 1 13.71 ? C2D EEB 402 A 1 HETATM 11 O O2D EEB . . . B 2 15.929 25.015 11.979 1 14.94 ? O2D EEB 402 A 1 HETATM 12 C C3D EEB . . . B 2 14.053 25.223 13.486 1 15.18 ? C3D EEB 402 A 1 HETATM 13 C C4D EEB . . . B 2 13.671 24.48 14.767 1 13.76 ? C4D EEB 402 A 1 HETATM 14 O O4D EEB . . . B 2 14.669 23.519 14.991 1 14.41 ? O4D EEB 402 A 1 HETATM 15 O O3D EEB . . . B 2 14.395 26.614 13.493 1 15.46 ? O3D EEB 402 A 1 HETATM 16 C C5D EEB . . . B 2 12.317 23.739 14.429 1 12.33 ? C5D EEB 402 A 1 HETATM 17 O O5D EEB . . . B 2 12.605 22.881 13.256 1 9.98 ? O5D EEB 402 A 1 HETATM 18 P PA EEB . . . B 2 11.419 22.196 12.516 1 11.04 ? PA EEB 402 A 1 HETATM 19 O O1A EEB . . . B 2 10.882 23.404 11.761 1 11.06 ? O1A EEB 402 A 1 HETATM 20 O O2A EEB . . . B 2 12.203 21.286 11.593 1 11.65 ? O2A EEB 402 A 1 HETATM 21 O O3A EEB . . . B 2 10.268 21.44 13.128 1 13.46 ? O3A EEB 402 A 1 HETATM 22 P PB EEB . . . B 2 10.502 20.736 14.492 1 10.32 ? PB EEB 402 A 1 HETATM 23 O O1B EEB . . . B 2 10.071 21.634 15.629 1 11.07 ? O1B EEB 402 A 1 HETATM 24 O O2B EEB . . . B 2 11.914 20.206 14.617 1 14.61 ? O2B EEB 402 A 1 HETATM 25 C C1 EEB . . . B 2 8.212 19.87 14.659 1 8.31 ? C1 EEB 402 A 1 HETATM 26 C C2 EEB . . . B 2 7.289 18.673 14.79 1 7.28 ? C2 EEB 402 A 1 HETATM 27 C C3 EEB . . . B 2 7.283 17.89 13.49 1 5.48 ? C3 EEB 402 A 1 HETATM 28 C C4 EEB . . . B 2 6.62 19.004 12.538 1 4.82 ? C4 EEB 402 A 1 HETATM 29 C C5 EEB . . . B 2 7.436 20.317 12.455 1 5.46 ? C5 EEB 402 A 1 HETATM 30 C C6 EEB . . . B 2 6.708 21.457 11.679 1 4.82 ? C6 EEB 402 A 1 HETATM 31 C C7 EEB . . . B 2 6.951 18.501 17.386 1 7.55 ? C7 EEB 402 A 1 HETATM 32 C C8 EEB . . . B 2 7.665 17.522 18.339 1 8.93 ? C8 EEB 402 A 1 HETATM 33 N N2 EEB . . . B 2 7.406 18.278 16.168 1 6.76 ? N2 EEB 402 A 1 HETATM 34 O O1 EEB . . . B 2 9.538 19.578 14.356 1 11.54 ? O1 EEB 402 A 1 HETATM 35 O O3 EEB . . . B 2 6.554 16.765 13.822 1 5.13 ? O3 EEB 402 A 1 HETATM 36 O O4 EEB . . . B 2 6.436 18.542 11.234 1 3.84 ? O4 EEB 402 A 1 HETATM 37 O O5 EEB . . . B 2 7.588 20.771 13.786 1 6.52 ? O5 EEB 402 A 1 HETATM 38 O O6 EEB . . . B 2 5.549 21.994 12.299 1 6.06 ? O6 EEB 402 A 1 HETATM 39 O O7 EEB . . . B 2 6.156 19.28 17.763 1 13.62 ? O7 EEB 402 A 1 HETATM 40 C C1E EEB . . . B 2 6.572 14.455 14.299 1 7.64 ? C1E EEB 402 A 1 HETATM 41 C C2E EEB . . . B 2 7.027 15.569 13.389 1 6.57 ? C2E EEB 402 A 1 HETATM 42 C C3E EEB . . . B 2 7.796 15.412 12.272 1 7.04 ? C3E EEB 402 A 1 HETATM 43 C C4E EEB . . . B 2 8.345 14.118 11.758 1 6.83 ? C4E EEB 402 A 1 HETATM 44 O O1E EEB . . . B 2 6.865 13.231 14.031 1 11.23 ? O1E EEB 402 A 1 HETATM 45 O O2E EEB . . . B 2 5.88 14.736 15.349 1 5.48 ? O2E EEB 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 45 #