data_1MBC # _model_server_result.job_id nKEGQrFiT8kLbYI7pp40TA _model_server_result.datetime_utc '2024-10-18 11:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":155}' # _entry.id 1MBC # _exptl.entry_id 1MBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.84 _cell.angle_gamma 90 _cell.entry_id 1MBC _cell.length_a 64.18 _cell.length_b 30.84 _cell.length_c 34.69 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 C FE HEM . A HEM 155 1_555 D C CMO . A CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc3 C FE HEM . A HEM 155 1_555 D O CMO . A CMO 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.929 ? metalc ? metalc4 C FE HEM . A HEM 155 1_555 D O CMO . A CMO 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.731 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 1MBC _atom_sites.fract_transf_matrix[1][1] 0.01558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00442 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 154 2 SO4 SO4 . C 3 HEM A 1 155 1 HEM HEM . D 4 CMO A 1 201 1 CMO HEM . E 5 HOH A 1 202 3 HOH HOH . E 5 HOH A 2 203 4 HOH HOH . E 5 HOH A 3 204 5 HOH HOH . E 5 HOH A 4 205 6 HOH HOH . E 5 HOH A 5 206 7 HOH HOH . E 5 HOH A 6 207 8 HOH HOH . E 5 HOH A 7 208 9 HOH HOH . E 5 HOH A 8 209 10 HOH HOH . E 5 HOH A 9 210 11 HOH HOH . E 5 HOH A 10 211 12 HOH HOH . E 5 HOH A 11 212 13 HOH HOH . E 5 HOH A 12 213 14 HOH HOH . E 5 HOH A 13 214 15 HOH HOH . E 5 HOH A 14 215 16 HOH HOH . E 5 HOH A 15 216 17 HOH HOH . E 5 HOH A 16 217 18 HOH HOH . E 5 HOH A 17 218 19 HOH HOH . E 5 HOH A 18 219 20 HOH HOH . E 5 HOH A 19 220 21 HOH HOH . E 5 HOH A 20 221 22 HOH HOH . E 5 HOH A 21 222 23 HOH HOH . E 5 HOH A 22 223 24 HOH HOH . E 5 HOH A 23 224 25 HOH HOH . E 5 HOH A 24 225 26 HOH HOH . E 5 HOH A 25 226 27 HOH HOH . E 5 HOH A 26 227 28 HOH HOH . E 5 HOH A 27 228 29 HOH HOH . E 5 HOH A 28 229 30 HOH HOH . E 5 HOH A 29 230 31 HOH HOH . E 5 HOH A 30 231 32 HOH HOH . E 5 HOH A 31 232 33 HOH HOH . E 5 HOH A 32 233 34 HOH HOH . E 5 HOH A 33 234 35 HOH HOH . E 5 HOH A 34 235 36 HOH HOH . E 5 HOH A 35 236 37 HOH HOH . E 5 HOH A 36 237 38 HOH HOH . E 5 HOH A 37 238 39 HOH HOH . E 5 HOH A 38 239 40 HOH HOH . E 5 HOH A 39 240 41 HOH HOH . E 5 HOH A 40 241 42 HOH HOH . E 5 HOH A 41 242 43 HOH HOH . E 5 HOH A 42 243 44 HOH HOH . E 5 HOH A 43 244 45 HOH HOH . E 5 HOH A 44 245 46 HOH HOH . E 5 HOH A 45 246 47 HOH HOH . E 5 HOH A 46 247 48 HOH HOH . E 5 HOH A 47 248 49 HOH HOH . E 5 HOH A 48 249 50 HOH HOH . E 5 HOH A 49 250 51 HOH HOH . E 5 HOH A 50 251 52 HOH HOH . E 5 HOH A 51 252 53 HOH HOH . E 5 HOH A 52 253 54 HOH HOH . E 5 HOH A 53 254 55 HOH HOH . E 5 HOH A 54 255 56 HOH HOH . E 5 HOH A 55 256 57 HOH HOH . E 5 HOH A 56 257 58 HOH HOH . E 5 HOH A 57 258 59 HOH HOH . E 5 HOH A 58 259 60 HOH HOH . E 5 HOH A 59 260 61 HOH HOH . E 5 HOH A 60 261 62 HOH HOH . E 5 HOH A 61 262 63 HOH HOH . E 5 HOH A 62 263 64 HOH HOH . E 5 HOH A 63 264 65 HOH HOH . E 5 HOH A 64 265 66 HOH HOH . E 5 HOH A 65 266 67 HOH HOH . E 5 HOH A 66 267 68 HOH HOH . E 5 HOH A 67 268 69 HOH HOH . E 5 HOH A 68 269 70 HOH HOH . E 5 HOH A 69 270 71 HOH HOH . E 5 HOH A 70 271 72 HOH HOH . E 5 HOH A 71 272 73 HOH HOH . E 5 HOH A 72 273 74 HOH HOH . E 5 HOH A 73 274 75 HOH HOH . E 5 HOH A 74 275 76 HOH HOH . E 5 HOH A 75 276 77 HOH HOH . E 5 HOH A 76 277 78 HOH HOH . E 5 HOH A 77 278 79 HOH HOH . E 5 HOH A 78 279 80 HOH HOH . E 5 HOH A 79 280 81 HOH HOH . E 5 HOH A 80 281 82 HOH HOH . E 5 HOH A 81 282 83 HOH HOH . E 5 HOH A 82 283 84 HOH HOH . E 5 HOH A 83 284 85 HOH HOH . E 5 HOH A 84 285 86 HOH HOH . E 5 HOH A 85 286 87 HOH HOH . E 5 HOH A 86 287 88 HOH HOH . E 5 HOH A 87 288 89 HOH HOH . E 5 HOH A 88 289 90 HOH HOH . E 5 HOH A 89 290 91 HOH HOH . E 5 HOH A 90 291 92 HOH HOH . E 5 HOH A 91 292 93 HOH HOH . E 5 HOH A 92 293 94 HOH HOH . E 5 HOH A 93 294 95 HOH HOH . E 5 HOH A 94 295 96 HOH HOH . E 5 HOH A 95 296 97 HOH HOH . E 5 HOH A 96 297 98 HOH HOH . E 5 HOH A 97 298 99 HOH HOH . E 5 HOH A 98 299 100 HOH HOH . E 5 HOH A 99 300 101 HOH HOH . E 5 HOH A 100 301 102 HOH HOH . E 5 HOH A 101 302 103 HOH HOH . E 5 HOH A 102 303 104 HOH HOH . E 5 HOH A 103 304 105 HOH HOH . E 5 HOH A 104 305 106 HOH HOH . E 5 HOH A 105 306 107 HOH HOH . E 5 HOH A 106 307 108 HOH HOH . E 5 HOH A 107 308 109 HOH HOH . E 5 HOH A 108 309 110 HOH HOH . E 5 HOH A 109 310 111 HOH HOH . E 5 HOH A 110 311 112 HOH HOH . E 5 HOH A 111 312 113 HOH HOH . E 5 HOH A 112 313 114 HOH HOH . E 5 HOH A 113 314 115 HOH HOH . E 5 HOH A 114 315 116 HOH HOH . E 5 HOH A 115 316 117 HOH HOH . E 5 HOH A 116 317 118 HOH HOH . E 5 HOH A 117 318 119 HOH HOH . E 5 HOH A 118 319 120 HOH HOH . E 5 HOH A 119 320 121 HOH HOH . E 5 HOH A 120 321 122 HOH HOH . E 5 HOH A 121 322 123 HOH HOH . E 5 HOH A 122 323 124 HOH HOH . E 5 HOH A 123 324 125 HOH HOH . E 5 HOH A 124 325 126 HOH HOH . E 5 HOH A 125 326 127 HOH HOH . E 5 HOH A 126 327 128 HOH HOH . E 5 HOH A 127 328 129 HOH HOH . E 5 HOH A 128 329 130 HOH HOH . E 5 HOH A 129 330 131 HOH HOH . E 5 HOH A 130 331 132 HOH HOH . E 5 HOH A 131 332 133 HOH HOH . E 5 HOH A 132 333 134 HOH HOH . E 5 HOH A 133 334 135 HOH HOH . E 5 HOH A 134 335 136 HOH HOH . E 5 HOH A 135 336 137 HOH HOH . E 5 HOH A 136 337 138 HOH HOH . E 5 HOH A 137 338 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 16.165 30.809 5.005 1 5.16 ? CHA HEM 155 A 1 HETATM 2 C CHB HEM . . . C 3 14.075 27.694 8.076 1 4.24 ? CHB HEM 155 A 1 HETATM 3 C CHC HEM . . . C 3 13.402 24.734 4.338 1 3.32 ? CHC HEM 155 A 1 HETATM 4 C CHD HEM . . . C 3 15.493 27.725 1.268 1 5.37 ? CHD HEM 155 A 1 HETATM 5 C C1A HEM . . . C 3 15.596 30.285 6.107 1 5.36 ? C1A HEM 155 A 1 HETATM 6 C C2A HEM . . . C 3 15.538 30.933 7.442 1 5.05 ? C2A HEM 155 A 1 HETATM 7 C C3A HEM . . . C 3 14.926 30.069 8.242 1 4.67 ? C3A HEM 155 A 1 HETATM 8 C C4A HEM . . . C 3 14.74 28.866 7.542 1 4.79 ? C4A HEM 155 A 1 HETATM 9 C CMA HEM . . . C 3 14.564 30.192 9.744 1 4.41 ? CMA HEM 155 A 1 HETATM 10 C CAA HEM . . . C 3 15.966 32.351 7.742 1 6.14 ? CAA HEM 155 A 1 HETATM 11 C CBA HEM . . . C 3 14.818 33.369 7.942 1 8.07 ? CBA HEM 155 A 1 HETATM 12 C CGA HEM . . . C 3 13.866 33.369 6.774 1 9.96 ? CGA HEM 155 A 1 HETATM 13 O O1A HEM . . . C 3 12.783 32.721 6.974 1 12.82 ? O1A HEM 155 A 1 HETATM 14 O O2A HEM . . . C 3 14.198 33.831 5.606 1 10.83 ? O2A HEM 155 A 1 HETATM 15 C C1B HEM . . . C 3 13.641 26.584 7.341 1 3.79 ? C1B HEM 155 A 1 HETATM 16 C C2B HEM . . . C 3 12.931 25.443 7.809 1 3.67 ? C2B HEM 155 A 1 HETATM 17 C C3B HEM . . . C 3 12.766 24.61 6.807 1 3.49 ? C3B HEM 155 A 1 HETATM 18 C C4B HEM . . . C 3 13.299 25.258 5.606 1 3.35 ? C4B HEM 155 A 1 HETATM 19 C CMB HEM . . . C 3 12.505 25.289 9.31 1 2.58 ? CMB HEM 155 A 1 HETATM 20 C CAB HEM . . . C 3 12.152 23.223 6.707 1 3.83 ? CAB HEM 155 A 1 HETATM 21 C CBB HEM . . . C 3 12.501 22.39 7.742 1 3.57 ? CBB HEM 155 A 1 HETATM 22 C C1C HEM . . . C 3 13.917 25.196 3.204 1 3.72 ? C1C HEM 155 A 1 HETATM 23 C C2C HEM . . . C 3 14.129 24.518 2.002 1 3.66 ? C2C HEM 155 A 1 HETATM 24 C C3C HEM . . . C 3 14.751 25.381 1.168 1 4.85 ? C3C HEM 155 A 1 HETATM 25 C C4C HEM . . . C 3 14.864 26.646 1.902 1 3.86 ? C4C HEM 155 A 1 HETATM 26 C CMC HEM . . . C 3 13.71 23.068 1.668 1 4.09 ? CMC HEM 155 A 1 HETATM 27 C CAC HEM . . . C 3 15.241 25.196 -0.334 1 4.53 ? CAC HEM 155 A 1 HETATM 28 C CBC HEM . . . C 3 15.383 23.994 -0.834 1 5.52 ? CBC HEM 155 A 1 HETATM 29 C C1D HEM . . . C 3 15.834 28.743 2.102 1 6.39 ? C1D HEM 155 A 1 HETATM 30 C C2D HEM . . . C 3 16.572 29.946 1.535 1 6.91 ? C2D HEM 155 A 1 HETATM 31 C C3D HEM . . . C 3 16.718 30.747 2.603 1 6.68 ? C3D HEM 155 A 1 HETATM 32 C C4D HEM . . . C 3 16.076 30.192 3.737 1 5.67 ? C4D HEM 155 A 1 HETATM 33 C CMD HEM . . . C 3 16.934 30.131 0.033 1 7.43 ? CMD HEM 155 A 1 HETATM 34 C CAD HEM . . . C 3 17.443 32.104 2.536 1 8.65 ? CAD HEM 155 A 1 HETATM 35 C CBD HEM . . . C 3 18.775 32.074 3.27 1 11.02 ? CBD HEM 155 A 1 HETATM 36 C CGD HEM . . . C 3 19.776 33.091 3.137 1 12.26 ? CGD HEM 155 A 1 HETATM 37 O O1D HEM . . . C 3 20.126 33.276 1.902 1 13.33 ? O1D HEM 155 A 1 HETATM 38 O O2D HEM . . . C 3 20.134 33.677 4.138 1 13.5 ? O2D HEM 155 A 1 HETATM 39 N NA HEM . . . C 3 15.064 29.02 6.173 1 5.16 ? NA HEM 155 A 1 HETATM 40 N NB HEM . . . C 3 13.846 26.492 5.94 1 4.27 ? NB HEM 155 A 1 HETATM 41 N NC HEM . . . C 3 14.44 26.492 3.17 1 4.36 ? NC HEM 155 A 1 HETATM 42 N ND HEM . . . C 3 15.583 28.928 3.437 1 5.31 ? ND HEM 155 A 1 HETATM 43 FE FE HEM . . . C 3 14.701 27.694 4.739 1 6.01 ? FE HEM 155 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #