data_1MBI # _model_server_result.job_id U3XUx5BlfeT3uqxwTEny_Q _model_server_result.datetime_utc '2024-11-02 19:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":154}' # _entry.id 1MBI # _exptl.entry_id 1MBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.67 _cell.angle_gamma 90 _cell.entry_id 1MBI _cell.length_a 64.9 _cell.length_b 30.76 _cell.length_c 34.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 C FE HEM . A HEM 154 1_555 D N1 IMD . A IMD 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1MBI _atom_sites.fract_transf_matrix[1][1] 0.015408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004322 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 3 HEM A 1 154 154 HEM HEM . D 4 IMD A 1 155 155 IMD IMD . E 5 HOH A 1 160 160 HOH HOH . E 5 HOH A 2 161 161 HOH HOH . E 5 HOH A 3 162 162 HOH HOH . E 5 HOH A 4 163 163 HOH HOH . E 5 HOH A 5 164 164 HOH HOH . E 5 HOH A 6 165 165 HOH HOH . E 5 HOH A 7 166 166 HOH HOH . E 5 HOH A 8 167 167 HOH HOH . E 5 HOH A 9 168 168 HOH HOH . E 5 HOH A 10 169 169 HOH HOH . E 5 HOH A 11 170 170 HOH HOH . E 5 HOH A 12 171 171 HOH HOH . E 5 HOH A 13 172 172 HOH HOH . E 5 HOH A 14 173 173 HOH HOH . E 5 HOH A 15 174 174 HOH HOH . E 5 HOH A 16 175 175 HOH HOH . E 5 HOH A 17 176 176 HOH HOH . E 5 HOH A 18 177 177 HOH HOH . E 5 HOH A 19 178 178 HOH HOH . E 5 HOH A 20 179 179 HOH HOH . E 5 HOH A 21 180 180 HOH HOH . E 5 HOH A 22 181 181 HOH HOH . E 5 HOH A 23 182 182 HOH HOH . E 5 HOH A 24 183 183 HOH HOH . E 5 HOH A 25 184 184 HOH HOH . E 5 HOH A 26 185 185 HOH HOH . E 5 HOH A 27 186 186 HOH HOH . E 5 HOH A 28 187 187 HOH HOH . E 5 HOH A 29 188 188 HOH HOH . E 5 HOH A 30 189 189 HOH HOH . E 5 HOH A 31 190 190 HOH HOH . E 5 HOH A 32 191 191 HOH HOH . E 5 HOH A 33 192 192 HOH HOH . E 5 HOH A 34 193 193 HOH HOH . E 5 HOH A 35 194 194 HOH HOH . E 5 HOH A 36 195 195 HOH HOH . E 5 HOH A 37 196 196 HOH HOH . E 5 HOH A 38 197 197 HOH HOH . E 5 HOH A 39 198 198 HOH HOH . E 5 HOH A 40 199 199 HOH HOH . E 5 HOH A 41 200 200 HOH HOH . E 5 HOH A 42 201 201 HOH HOH . E 5 HOH A 43 202 202 HOH HOH . E 5 HOH A 44 203 203 HOH HOH . E 5 HOH A 45 204 204 HOH HOH . E 5 HOH A 46 205 205 HOH HOH . E 5 HOH A 47 206 206 HOH HOH . E 5 HOH A 48 207 207 HOH HOH . E 5 HOH A 49 208 208 HOH HOH . E 5 HOH A 50 209 209 HOH HOH . E 5 HOH A 51 210 210 HOH HOH . E 5 HOH A 52 211 211 HOH HOH . E 5 HOH A 53 212 212 HOH HOH . E 5 HOH A 54 213 213 HOH HOH . E 5 HOH A 55 214 214 HOH HOH . E 5 HOH A 56 215 215 HOH HOH . E 5 HOH A 57 216 216 HOH HOH . E 5 HOH A 58 217 217 HOH HOH . E 5 HOH A 59 218 218 HOH HOH . E 5 HOH A 60 219 219 HOH HOH . E 5 HOH A 61 220 220 HOH HOH . E 5 HOH A 62 221 221 HOH HOH . E 5 HOH A 63 222 222 HOH HOH . E 5 HOH A 64 223 223 HOH HOH . E 5 HOH A 65 224 224 HOH HOH . E 5 HOH A 66 225 225 HOH HOH . E 5 HOH A 67 226 226 HOH HOH . E 5 HOH A 68 227 227 HOH HOH . E 5 HOH A 69 228 228 HOH HOH . E 5 HOH A 70 229 229 HOH HOH . E 5 HOH A 71 230 230 HOH HOH . E 5 HOH A 72 231 231 HOH HOH . E 5 HOH A 73 232 232 HOH HOH . E 5 HOH A 74 233 233 HOH HOH . E 5 HOH A 75 234 234 HOH HOH . E 5 HOH A 76 235 235 HOH HOH . E 5 HOH A 77 236 236 HOH HOH . E 5 HOH A 78 237 237 HOH HOH . E 5 HOH A 79 238 238 HOH HOH . E 5 HOH A 80 239 239 HOH HOH . E 5 HOH A 81 240 240 HOH HOH . E 5 HOH A 82 241 241 HOH HOH . E 5 HOH A 83 242 242 HOH HOH . E 5 HOH A 84 243 243 HOH HOH . E 5 HOH A 85 244 244 HOH HOH . E 5 HOH A 86 245 245 HOH HOH . E 5 HOH A 87 246 246 HOH HOH . E 5 HOH A 88 247 247 HOH HOH . E 5 HOH A 89 248 248 HOH HOH . E 5 HOH A 90 249 249 HOH HOH . E 5 HOH A 91 250 250 HOH HOH . E 5 HOH A 92 251 251 HOH HOH . E 5 HOH A 93 252 252 HOH HOH . E 5 HOH A 94 253 253 HOH HOH . E 5 HOH A 95 254 254 HOH HOH . E 5 HOH A 96 255 255 HOH HOH . E 5 HOH A 97 256 256 HOH HOH . E 5 HOH A 98 257 257 HOH HOH . E 5 HOH A 99 258 258 HOH HOH . E 5 HOH A 100 259 259 HOH HOH . E 5 HOH A 101 260 260 HOH HOH . E 5 HOH A 102 261 261 HOH HOH . E 5 HOH A 103 262 262 HOH HOH . E 5 HOH A 104 263 263 HOH HOH . E 5 HOH A 105 264 264 HOH HOH . E 5 HOH A 106 265 265 HOH HOH . E 5 HOH A 107 266 266 HOH HOH . E 5 HOH A 108 267 267 HOH HOH . E 5 HOH A 109 268 268 HOH HOH . E 5 HOH A 110 269 269 HOH HOH . E 5 HOH A 111 270 270 HOH HOH . E 5 HOH A 112 271 271 HOH HOH . E 5 HOH A 113 272 272 HOH HOH . E 5 HOH A 114 273 273 HOH HOH . E 5 HOH A 115 274 274 HOH HOH . E 5 HOH A 116 275 275 HOH HOH . E 5 HOH A 117 276 276 HOH HOH . E 5 HOH A 118 277 277 HOH HOH . E 5 HOH A 119 278 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 15.838 31.255 5.025 1 16.25 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . C 3 13.966 27.953 8.125 1 10.8 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . C 3 13.399 24.964 4.503 1 22.37 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . C 3 15.684 27.995 1.509 1 20.33 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . C 3 15.4 30.506 6.088 1 10.74 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . C 3 15.181 31.194 7.337 1 17.64 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . C 3 14.892 30.297 8.312 1 21.07 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . C 3 14.498 29.085 7.577 1 9.84 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . C 3 14.515 30.667 9.749 1 35.03 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . C 3 15.787 32.626 7.486 1 17.89 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . C 3 14.818 33.736 7.91 1 29.19 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . C 3 13.832 33.881 6.786 1 52.47 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . C 3 14.292 34.323 5.723 1 33.97 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . C 3 12.626 33.504 6.891 1 30.72 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . C 3 13.55 26.973 7.297 1 9.38 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . C 3 13.06 25.78 7.941 1 16.95 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . C 3 12.91 24.884 6.954 1 11.54 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . C 3 13.382 25.573 5.731 1 13.08 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . C 3 12.487 25.785 9.382 1 12.46 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . C 3 12.06 23.605 7.056 1 17.83 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . C 3 12.477 22.645 7.877 1 25.39 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . C 3 13.987 25.489 3.366 1 24.72 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . C 3 14.328 24.72 2.168 1 13.77 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . C 3 14.872 25.617 1.286 1 11.45 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . C 3 15.005 26.896 1.986 1 15.39 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . C 3 13.845 23.273 1.925 1 14.4 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . C 3 15.431 25.409 -0.129 1 19.21 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . C 3 15.489 24.19 -0.653 1 21.77 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . C 3 15.952 29.144 2.248 1 20.5 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . C 3 16.378 30.373 1.593 1 20.87 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . C 3 16.563 31.267 2.589 1 17.38 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . C 3 15.925 30.728 3.792 1 11.81 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . C 3 16.931 30.465 0.148 1 22.2 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . C 3 17.512 32.463 2.522 1 23.4 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . C 3 18.95 32.176 2.997 1 26.63 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . C 3 19.856 33.383 2.846 1 41.21 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . C 3 20.767 33.324 2.001 1 54.9 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . C 3 19.627 34.396 3.541 1 65.18 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . C 3 14.831 29.214 6.215 1 31.97 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . C 3 13.938 26.798 5.984 1 15.72 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . C 3 14.554 26.744 3.288 1 12.83 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . C 3 15.617 29.398 3.58 1 19.43 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . C 3 14.708 28.098 4.707 1 16.86 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #