data_1MBQ
#
_model_server_result.job_id            Rwbw7EJ2LrcGELz0VWAN7g 
_model_server_result.datetime_utc      '2025-02-27 06:49:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mbq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1222}' 
#
_entry.id    1MBQ 
#
_exptl.entry_id    1MBQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MBQ 
_cell.length_a            44.93 
_cell.length_b            48.01 
_cell.length_c            82.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MBQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 136 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 209 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 182 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 147 A CYS 168 1_555 A SG CYS 161 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 A SG CYS 172 A CYS 191 1_555 A SG CYS 196 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 B CA CA . A CA 1 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc2 B CA CA . A CA 1 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc3 B CA CA . A CA 1 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc4 B CA CA . A CA 1 1_555 A OE1 GLU 59 A GLU 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 B CA CA . A CA 1 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc6 B CA CA . A CA 1 1_555 D O HOH . A HOH 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1MBQ 
_atom_sites.fract_transf_matrix[1][1]    0.022257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020829 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1 1 CA CA . 
C 3 BEN A 1 1222 1 BEN BEN . 
D 4 HOH A 1 1223 1 HOH HOH . 
D 4 HOH A 2 1224 2 HOH HOH . 
D 4 HOH A 3 1225 3 HOH HOH . 
D 4 HOH A 4 1226 4 HOH HOH . 
D 4 HOH A 5 1227 5 HOH HOH . 
D 4 HOH A 6 1228 6 HOH HOH . 
D 4 HOH A 7 1229 7 HOH HOH . 
D 4 HOH A 8 1230 8 HOH HOH . 
D 4 HOH A 9 1231 9 HOH HOH . 
D 4 HOH A 10 1232 10 HOH HOH . 
D 4 HOH A 11 1233 11 HOH HOH . 
D 4 HOH A 12 1234 12 HOH HOH . 
D 4 HOH A 13 1235 13 HOH HOH . 
D 4 HOH A 14 1236 14 HOH HOH . 
D 4 HOH A 15 1237 15 HOH HOH . 
D 4 HOH A 16 1238 16 HOH HOH . 
D 4 HOH A 17 1239 17 HOH HOH . 
D 4 HOH A 18 1240 18 HOH HOH . 
D 4 HOH A 19 1241 19 HOH HOH . 
D 4 HOH A 20 1242 20 HOH HOH . 
D 4 HOH A 21 1243 21 HOH HOH . 
D 4 HOH A 22 1244 22 HOH HOH . 
D 4 HOH A 23 1245 23 HOH HOH . 
D 4 HOH A 24 1246 24 HOH HOH . 
D 4 HOH A 25 1247 25 HOH HOH . 
D 4 HOH A 26 1248 26 HOH HOH . 
D 4 HOH A 27 1249 27 HOH HOH . 
D 4 HOH A 28 1250 28 HOH HOH . 
D 4 HOH A 29 1251 29 HOH HOH . 
D 4 HOH A 30 1252 30 HOH HOH . 
D 4 HOH A 31 1253 31 HOH HOH . 
D 4 HOH A 32 1254 32 HOH HOH . 
D 4 HOH A 33 1255 33 HOH HOH . 
D 4 HOH A 34 1256 34 HOH HOH . 
D 4 HOH A 35 1257 35 HOH HOH . 
D 4 HOH A 36 1258 36 HOH HOH . 
D 4 HOH A 37 1259 37 HOH HOH . 
D 4 HOH A 38 1260 38 HOH HOH . 
D 4 HOH A 39 1261 39 HOH HOH . 
D 4 HOH A 40 1262 40 HOH HOH . 
D 4 HOH A 41 1263 41 HOH HOH . 
D 4 HOH A 42 1264 42 HOH HOH . 
D 4 HOH A 43 1265 43 HOH HOH . 
D 4 HOH A 44 1266 44 HOH HOH . 
D 4 HOH A 45 1267 45 HOH HOH . 
D 4 HOH A 46 1268 46 HOH HOH . 
D 4 HOH A 47 1269 47 HOH HOH . 
D 4 HOH A 48 1270 48 HOH HOH . 
D 4 HOH A 49 1271 49 HOH HOH . 
D 4 HOH A 50 1272 50 HOH HOH . 
D 4 HOH A 51 1273 51 HOH HOH . 
D 4 HOH A 52 1274 52 HOH HOH . 
D 4 HOH A 53 1275 53 HOH HOH . 
D 4 HOH A 54 1276 54 HOH HOH . 
D 4 HOH A 55 1277 55 HOH HOH . 
D 4 HOH A 56 1278 56 HOH HOH . 
D 4 HOH A 57 1279 57 HOH HOH . 
D 4 HOH A 58 1280 58 HOH HOH . 
D 4 HOH A 59 1281 59 HOH HOH . 
D 4 HOH A 60 1282 60 HOH HOH . 
D 4 HOH A 61 1283 61 HOH HOH . 
D 4 HOH A 62 1284 62 HOH HOH . 
D 4 HOH A 63 1285 63 HOH HOH . 
D 4 HOH A 64 1286 64 HOH HOH . 
D 4 HOH A 65 1287 65 HOH HOH . 
D 4 HOH A 66 1288 66 HOH HOH . 
D 4 HOH A 67 1289 67 HOH HOH . 
D 4 HOH A 68 1290 68 HOH HOH . 
D 4 HOH A 69 1291 69 HOH HOH . 
D 4 HOH A 70 1292 70 HOH HOH . 
D 4 HOH A 71 1293 71 HOH HOH . 
D 4 HOH A 72 1294 72 HOH HOH . 
D 4 HOH A 73 1295 73 HOH HOH . 
D 4 HOH A 74 1296 74 HOH HOH . 
D 4 HOH A 75 1297 75 HOH HOH . 
D 4 HOH A 76 1298 76 HOH HOH . 
D 4 HOH A 77 1299 77 HOH HOH . 
D 4 HOH A 78 1300 78 HOH HOH . 
D 4 HOH A 79 1301 79 HOH HOH . 
D 4 HOH A 80 1302 80 HOH HOH . 
D 4 HOH A 81 1303 81 HOH HOH . 
D 4 HOH A 82 1304 82 HOH HOH . 
D 4 HOH A 83 1305 83 HOH HOH . 
D 4 HOH A 84 1306 84 HOH HOH . 
D 4 HOH A 85 1307 85 HOH HOH . 
D 4 HOH A 86 1308 86 HOH HOH . 
D 4 HOH A 87 1309 87 HOH HOH . 
D 4 HOH A 88 1310 88 HOH HOH . 
D 4 HOH A 89 1311 89 HOH HOH . 
D 4 HOH A 90 1312 90 HOH HOH . 
D 4 HOH A 91 1313 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . C 3 23.88 8 24.788 1 11.11 ? C1 BEN 1222 A 1 
HETATM 2 C C2 BEN . . . C 3 22.704 7.725 24.096 1 10.62 ? C2 BEN 1222 A 1 
HETATM 3 C C3 BEN . . . C 3 21.906 8.758 23.606 1 11.95 ? C3 BEN 1222 A 1 
HETATM 4 C C4 BEN . . . C 3 22.283 10.084 23.809 1 11.94 ? C4 BEN 1222 A 1 
HETATM 5 C C5 BEN . . . C 3 23.458 10.37 24.502 1 13.34 ? C5 BEN 1222 A 1 
HETATM 6 C C6 BEN . . . C 3 24.25 9.327 24.99 1 12.11 ? C6 BEN 1222 A 1 
HETATM 7 C C BEN . . . C 3 24.707 6.917 25.294 1 11.78 ? C BEN 1222 A 1 
HETATM 8 N N1 BEN . . . C 3 25.974 7.143 25.623 1 9.64 ? N1 BEN 1222 A 1 
HETATM 9 N N2 BEN . . . C 3 24.201 5.697 25.424 1 11.28 ? N2 BEN 1222 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           559 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#