data_1MBU
#
_model_server_result.job_id            mbPSvU-yniTL3rxSWxG0gw 
_model_server_result.datetime_utc      '2024-10-24 04:23:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":107}' 
#
_entry.id    1MBU 
#
_exptl.entry_id    1MBU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.146 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE YTTRIUM' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1MBU 
_cell.length_a            87.913 
_cell.length_b            87.913 
_cell.length_c            209.42 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,M,O 1 1 
B,D,G,H,I,J,K,L,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C8 H19 N O5 Y' 
_chem_comp.formula_weight    298.146 
_chem_comp.id                YBT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE YTTRIUM' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
Y1 O1 YBT sing 389 n n 
Y1 O2 YBT sing 390 n n 
Y1 O4 YBT sing 391 n n 
Y1 O5 YBT sing 392 n n 
Y1 N1 YBT sing 393 n n 
O1 C2 YBT sing 394 n n 
O1 HO1 YBT sing 395 n n 
O2 C3 YBT sing 396 n n 
O2 HO2 YBT sing 397 n n 
O3 C4 YBT sing 398 n n 
O3 HO3 YBT sing 399 n n 
O4 C6 YBT sing 400 n n 
O4 HO4 YBT sing 401 n n 
O5 C8 YBT sing 402 n n 
O5 HO5 YBT sing 403 n n 
N1 C1 YBT sing 404 n n 
N1 C5 YBT sing 405 n n 
N1 C7 YBT sing 406 n n 
C1 C2 YBT sing 407 n n 
C1 C3 YBT sing 408 n n 
C1 C4 YBT sing 409 n n 
C2 H21 YBT sing 410 n n 
C2 H22 YBT sing 411 n n 
C3 H31 YBT sing 412 n n 
C3 H32 YBT sing 413 n n 
C4 H41 YBT sing 414 n n 
C4 H42 YBT sing 415 n n 
C5 C6 YBT sing 416 n n 
C5 H51 YBT sing 417 n n 
C5 H52 YBT sing 418 n n 
C6 H61 YBT sing 419 n n 
C6 H62 YBT sing 420 n n 
C7 C8 YBT sing 421 n n 
C7 H71 YBT sing 422 n n 
C7 H72 YBT sing 423 n n 
C8 H81 YBT sing 424 n n 
C8 H82 YBT sing 425 n n 
#
_atom_sites.entry_id                     1MBU 
_atom_sites.fract_transf_matrix[1][1]    0.011375 
_atom_sites.fract_transf_matrix[1][2]    0.006567 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 YBT A 1 143 2 YBT YBT . 
F 4 GOL A 1 144 7 GOL GOL . 
G 5 CL B 1 143 5 CL CL . 
H 5 CL B 1 144 6 CL CL . 
I 3 YBT B 1 145 1 YBT YBT . 
J 3 YBT B 1 146 3 YBT YBT . 
K 4 GOL B 1 147 8 GOL GOL . 
L 3 YBT D 1 107 4 YBT YBT . 
M 6 HOH A 1 145 10 HOH HOH . 
M 6 HOH A 2 146 12 HOH HOH . 
M 6 HOH A 3 147 15 HOH HOH . 
M 6 HOH A 4 148 17 HOH HOH . 
M 6 HOH A 5 149 25 HOH HOH . 
M 6 HOH A 6 150 31 HOH HOH . 
M 6 HOH A 7 151 35 HOH HOH . 
M 6 HOH A 8 152 36 HOH HOH . 
M 6 HOH A 9 153 39 HOH HOH . 
M 6 HOH A 10 154 44 HOH HOH . 
M 6 HOH A 11 155 50 HOH HOH . 
M 6 HOH A 12 156 53 HOH HOH . 
M 6 HOH A 13 157 56 HOH HOH . 
M 6 HOH A 14 158 59 HOH HOH . 
M 6 HOH A 15 159 62 HOH HOH . 
M 6 HOH A 16 160 66 HOH HOH . 
M 6 HOH A 17 161 71 HOH HOH . 
M 6 HOH A 18 162 72 HOH HOH . 
M 6 HOH A 19 163 75 HOH HOH . 
M 6 HOH A 20 164 78 HOH HOH . 
M 6 HOH A 21 165 79 HOH HOH . 
M 6 HOH A 22 166 80 HOH HOH . 
M 6 HOH A 23 167 88 HOH HOH . 
M 6 HOH A 24 168 91 HOH HOH . 
M 6 HOH A 25 169 96 HOH HOH . 
M 6 HOH A 26 170 98 HOH HOH . 
M 6 HOH A 27 171 99 HOH HOH . 
M 6 HOH A 28 172 102 HOH HOH . 
M 6 HOH A 29 173 113 HOH HOH . 
M 6 HOH A 30 174 114 HOH HOH . 
M 6 HOH A 31 175 115 HOH HOH . 
M 6 HOH A 32 176 119 HOH HOH . 
M 6 HOH A 33 177 121 HOH HOH . 
M 6 HOH A 34 178 122 HOH HOH . 
M 6 HOH A 35 179 123 HOH HOH . 
M 6 HOH A 36 180 124 HOH HOH . 
M 6 HOH A 37 181 135 HOH HOH . 
M 6 HOH A 38 182 136 HOH HOH . 
M 6 HOH A 39 183 141 HOH HOH . 
M 6 HOH A 40 184 145 HOH HOH . 
M 6 HOH A 41 185 146 HOH HOH . 
M 6 HOH A 42 186 151 HOH HOH . 
N 6 HOH B 1 148 9 HOH HOH . 
N 6 HOH B 2 149 11 HOH HOH . 
N 6 HOH B 3 150 13 HOH HOH . 
N 6 HOH B 4 151 16 HOH HOH . 
N 6 HOH B 5 152 18 HOH HOH . 
N 6 HOH B 6 153 19 HOH HOH . 
N 6 HOH B 7 154 22 HOH HOH . 
N 6 HOH B 8 155 24 HOH HOH . 
N 6 HOH B 9 156 30 HOH HOH . 
N 6 HOH B 10 157 37 HOH HOH . 
N 6 HOH B 11 158 40 HOH HOH . 
N 6 HOH B 12 159 49 HOH HOH . 
N 6 HOH B 13 160 57 HOH HOH . 
N 6 HOH B 14 161 70 HOH HOH . 
N 6 HOH B 15 162 73 HOH HOH . 
N 6 HOH B 16 163 81 HOH HOH . 
N 6 HOH B 17 164 82 HOH HOH . 
N 6 HOH B 18 165 83 HOH HOH . 
N 6 HOH B 19 166 84 HOH HOH . 
N 6 HOH B 20 167 85 HOH HOH . 
N 6 HOH B 21 168 89 HOH HOH . 
N 6 HOH B 22 169 93 HOH HOH . 
N 6 HOH B 23 170 101 HOH HOH . 
N 6 HOH B 24 171 104 HOH HOH . 
N 6 HOH B 25 172 116 HOH HOH . 
N 6 HOH B 26 173 128 HOH HOH . 
N 6 HOH B 27 174 129 HOH HOH . 
N 6 HOH B 28 175 130 HOH HOH . 
N 6 HOH B 29 176 131 HOH HOH . 
N 6 HOH B 30 177 133 HOH HOH . 
N 6 HOH B 31 178 134 HOH HOH . 
N 6 HOH B 32 179 138 HOH HOH . 
N 6 HOH B 33 180 143 HOH HOH . 
N 6 HOH B 34 181 144 HOH HOH . 
N 6 HOH B 35 182 148 HOH HOH . 
N 6 HOH B 36 183 149 HOH HOH . 
N 6 HOH B 37 184 150 HOH HOH . 
N 6 HOH B 38 185 153 HOH HOH . 
N 6 HOH B 39 186 156 HOH HOH . 
N 6 HOH B 40 187 159 HOH HOH . 
O 6 HOH C 1 107 28 HOH HOH . 
O 6 HOH C 2 108 32 HOH HOH . 
O 6 HOH C 3 109 42 HOH HOH . 
O 6 HOH C 4 110 45 HOH HOH . 
O 6 HOH C 5 111 47 HOH HOH . 
O 6 HOH C 6 112 48 HOH HOH . 
O 6 HOH C 7 113 51 HOH HOH . 
O 6 HOH C 8 114 55 HOH HOH . 
O 6 HOH C 9 115 64 HOH HOH . 
O 6 HOH C 10 116 65 HOH HOH . 
O 6 HOH C 11 117 76 HOH HOH . 
O 6 HOH C 12 118 77 HOH HOH . 
O 6 HOH C 13 119 86 HOH HOH . 
O 6 HOH C 14 120 103 HOH HOH . 
O 6 HOH C 15 121 117 HOH HOH . 
O 6 HOH C 16 122 118 HOH HOH . 
O 6 HOH C 17 123 139 HOH HOH . 
O 6 HOH C 18 124 142 HOH HOH . 
O 6 HOH C 19 125 147 HOH HOH . 
O 6 HOH C 20 126 154 HOH HOH . 
O 6 HOH C 21 127 157 HOH HOH . 
P 6 HOH D 1 108 14 HOH HOH . 
P 6 HOH D 2 109 20 HOH HOH . 
P 6 HOH D 3 110 21 HOH HOH . 
P 6 HOH D 4 111 23 HOH HOH . 
P 6 HOH D 5 112 26 HOH HOH . 
P 6 HOH D 6 113 27 HOH HOH . 
P 6 HOH D 7 114 29 HOH HOH . 
P 6 HOH D 8 115 33 HOH HOH . 
P 6 HOH D 9 116 34 HOH HOH . 
P 6 HOH D 10 117 38 HOH HOH . 
P 6 HOH D 11 118 41 HOH HOH . 
P 6 HOH D 12 119 43 HOH HOH . 
P 6 HOH D 13 120 46 HOH HOH . 
P 6 HOH D 14 121 52 HOH HOH . 
P 6 HOH D 15 122 54 HOH HOH . 
P 6 HOH D 16 123 58 HOH HOH . 
P 6 HOH D 17 124 60 HOH HOH . 
P 6 HOH D 18 125 61 HOH HOH . 
P 6 HOH D 19 126 63 HOH HOH . 
P 6 HOH D 20 127 67 HOH HOH . 
P 6 HOH D 21 128 68 HOH HOH . 
P 6 HOH D 22 129 69 HOH HOH . 
P 6 HOH D 23 130 74 HOH HOH . 
P 6 HOH D 24 131 87 HOH HOH . 
P 6 HOH D 25 132 90 HOH HOH . 
P 6 HOH D 26 133 92 HOH HOH . 
P 6 HOH D 27 134 94 HOH HOH . 
P 6 HOH D 28 135 95 HOH HOH . 
P 6 HOH D 29 136 97 HOH HOH . 
P 6 HOH D 30 137 100 HOH HOH . 
P 6 HOH D 31 138 105 HOH HOH . 
P 6 HOH D 32 139 106 HOH HOH . 
P 6 HOH D 33 140 107 HOH HOH . 
P 6 HOH D 34 141 108 HOH HOH . 
P 6 HOH D 35 142 109 HOH HOH . 
P 6 HOH D 36 143 110 HOH HOH . 
P 6 HOH D 37 144 111 HOH HOH . 
P 6 HOH D 38 145 112 HOH HOH . 
P 6 HOH D 39 146 120 HOH HOH . 
P 6 HOH D 40 147 125 HOH HOH . 
P 6 HOH D 41 148 126 HOH HOH . 
P 6 HOH D 42 149 127 HOH HOH . 
P 6 HOH D 43 150 132 HOH HOH . 
P 6 HOH D 44 151 137 HOH HOH . 
P 6 HOH D 45 152 140 HOH HOH . 
P 6 HOH D 46 153 152 HOH HOH . 
P 6 HOH D 47 154 155 HOH HOH . 
P 6 HOH D 48 155 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 Y Y1 YBT . . . L 3 40.03 39.602 7.217 1 93.34 ? Y1 YBT 107 D 1 
HETATM 2 O O1 YBT . . . L 3 40.755 39.704 4.94 1 93.19 ? O1 YBT 107 D 1 
HETATM 3 O O2 YBT . . . L 3 38.42 38.542 5.838 1 93.17 ? O2 YBT 107 D 1 
HETATM 4 O O3 YBT . . . L 3 38.168 42.414 2.81 1 93.93 ? O3 YBT 107 D 1 
HETATM 5 O O4 YBT . . . L 3 38.123 40.485 8.313 1 92.74 ? O4 YBT 107 D 1 
HETATM 6 O O5 YBT . . . L 3 40.966 41.776 7.323 1 92.61 ? O5 YBT 107 D 1 
HETATM 7 N N1 YBT . . . L 3 38.63 41.332 5.715 1 92.7 ? N1 YBT 107 D 1 
HETATM 8 C C1 YBT . . . L 3 38.499 40.516 4.364 1 92.94 ? C1 YBT 107 D 1 
HETATM 9 C C2 YBT . . . L 3 39.869 40.125 3.837 1 92.71 ? C2 YBT 107 D 1 
HETATM 10 C C3 YBT . . . L 3 37.755 39.175 4.713 1 93.05 ? C3 YBT 107 D 1 
HETATM 11 C C4 YBT . . . L 3 37.636 41.155 3.248 1 93.22 ? C4 YBT 107 D 1 
HETATM 12 C C5 YBT . . . L 3 37.313 41.726 6.386 1 92.02 ? C5 YBT 107 D 1 
HETATM 13 C C6 YBT . . . L 3 36.934 40.839 7.534 1 91.75 ? C6 YBT 107 D 1 
HETATM 14 C C7 YBT . . . L 3 39.501 42.589 5.593 1 91.97 ? C7 YBT 107 D 1 
HETATM 15 C C8 YBT . . . L 3 40.191 42.93 6.901 1 91.97 ? C8 YBT 107 D 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#