data_1MD7 # _model_server_result.job_id zRCS51FGbgsB4aDbgze8Dg _model_server_result.datetime_utc '2025-06-24 16:25:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1md7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1MD7 # _exptl.entry_id 1MD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MD7 _cell.length_a 167.06 _cell.length_b 167.06 _cell.length_c 43.648 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 359 1_555 A SG CYS 55 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 32 A CYS 389 1_555 A SG CYS 73 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 77 A CYS 434 1_555 A SG CYS 203 A CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 246 A CYS 603 1_555 A SG CYS 265 A CYS 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 276 A CYS 633 1_555 A SG CYS 306 A CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 140 A ASN 497 1_555 B C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1MD7 _atom_sites.fract_transf_matrix[1][1] 0.005986 _atom_sites.fract_transf_matrix[1][2] 0.003456 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1001 1001 NAG NAG . C 3 HOH A 1 2001 2001 HOH WAT . C 3 HOH A 2 2002 2002 HOH WAT . C 3 HOH A 3 2003 2003 HOH WAT . C 3 HOH A 4 2004 2004 HOH WAT . C 3 HOH A 5 2005 2005 HOH WAT . C 3 HOH A 6 2006 2006 HOH WAT . C 3 HOH A 7 2007 2007 HOH WAT . C 3 HOH A 8 2008 2008 HOH WAT . C 3 HOH A 9 2009 2009 HOH WAT . C 3 HOH A 10 2010 2010 HOH WAT . C 3 HOH A 11 2011 2011 HOH WAT . C 3 HOH A 12 2012 2012 HOH WAT . C 3 HOH A 13 2013 2013 HOH WAT . C 3 HOH A 14 2014 2014 HOH WAT . C 3 HOH A 15 2015 2015 HOH WAT . C 3 HOH A 16 2016 2016 HOH WAT . C 3 HOH A 17 2017 2017 HOH WAT . C 3 HOH A 18 2018 2018 HOH WAT . C 3 HOH A 19 2019 2019 HOH WAT . C 3 HOH A 20 2020 2020 HOH WAT . C 3 HOH A 21 2021 2021 HOH WAT . C 3 HOH A 22 2022 2022 HOH WAT . C 3 HOH A 23 2023 2023 HOH WAT . C 3 HOH A 24 2024 2024 HOH WAT . C 3 HOH A 25 2025 2025 HOH WAT . C 3 HOH A 26 2026 2026 HOH WAT . C 3 HOH A 27 2027 2027 HOH WAT . C 3 HOH A 28 2028 2028 HOH WAT . C 3 HOH A 29 2029 2029 HOH WAT . C 3 HOH A 30 2030 2030 HOH WAT . C 3 HOH A 31 2031 2031 HOH WAT . C 3 HOH A 32 2032 2032 HOH WAT . C 3 HOH A 33 2033 2033 HOH WAT . C 3 HOH A 34 2034 2034 HOH WAT . C 3 HOH A 35 2035 2035 HOH WAT . C 3 HOH A 36 2036 2036 HOH WAT . C 3 HOH A 37 2037 2037 HOH WAT . C 3 HOH A 38 2038 2038 HOH WAT . C 3 HOH A 39 2039 2039 HOH WAT . C 3 HOH A 40 2040 2040 HOH WAT . C 3 HOH A 41 2041 2041 HOH WAT . C 3 HOH A 42 2042 2042 HOH WAT . C 3 HOH A 43 2043 2043 HOH WAT . C 3 HOH A 44 2044 2044 HOH WAT . C 3 HOH A 45 2045 2045 HOH WAT . C 3 HOH A 46 2046 2046 HOH WAT . C 3 HOH A 47 2047 2047 HOH WAT . C 3 HOH A 48 2048 2048 HOH WAT . C 3 HOH A 49 2049 2049 HOH WAT . C 3 HOH A 50 2050 2050 HOH WAT . C 3 HOH A 51 2051 2051 HOH WAT . C 3 HOH A 52 2052 2052 HOH WAT . C 3 HOH A 53 2053 2053 HOH WAT . C 3 HOH A 54 2054 2054 HOH WAT . C 3 HOH A 55 2055 2055 HOH WAT . C 3 HOH A 56 2056 2056 HOH WAT . C 3 HOH A 57 2057 2057 HOH WAT . C 3 HOH A 58 2058 2058 HOH WAT . C 3 HOH A 59 2059 2059 HOH WAT . C 3 HOH A 60 2060 2060 HOH WAT . C 3 HOH A 61 2061 2061 HOH WAT . C 3 HOH A 62 2062 2062 HOH WAT . C 3 HOH A 63 2063 2063 HOH WAT . C 3 HOH A 64 2064 2064 HOH WAT . C 3 HOH A 65 2065 2065 HOH WAT . C 3 HOH A 66 2066 2066 HOH WAT . C 3 HOH A 67 2067 2067 HOH WAT . C 3 HOH A 68 2068 2068 HOH WAT . C 3 HOH A 69 2069 2069 HOH WAT . C 3 HOH A 70 2070 2070 HOH WAT . C 3 HOH A 71 2071 2071 HOH WAT . C 3 HOH A 72 2072 2072 HOH WAT . C 3 HOH A 73 2073 2073 HOH WAT . C 3 HOH A 74 2074 2074 HOH WAT . C 3 HOH A 75 2075 2075 HOH WAT . C 3 HOH A 76 2076 2076 HOH WAT . C 3 HOH A 77 2077 2077 HOH WAT . C 3 HOH A 78 2078 2078 HOH WAT . C 3 HOH A 79 2079 2079 HOH WAT . C 3 HOH A 80 2080 2080 HOH WAT . C 3 HOH A 81 2081 2081 HOH WAT . C 3 HOH A 82 2082 2082 HOH WAT . C 3 HOH A 83 2083 2083 HOH WAT . C 3 HOH A 84 2084 2084 HOH WAT . C 3 HOH A 85 2085 2085 HOH WAT . C 3 HOH A 86 2086 2086 HOH WAT . C 3 HOH A 87 2087 2087 HOH WAT . C 3 HOH A 88 2088 2088 HOH WAT . C 3 HOH A 89 2089 2089 HOH WAT . C 3 HOH A 90 2090 2090 HOH WAT . C 3 HOH A 91 2091 2091 HOH WAT . C 3 HOH A 92 2092 2092 HOH WAT . C 3 HOH A 93 2093 2093 HOH WAT . C 3 HOH A 94 2094 2094 HOH WAT . C 3 HOH A 95 2095 2095 HOH WAT . C 3 HOH A 96 2096 2096 HOH WAT . C 3 HOH A 97 2097 2097 HOH WAT . C 3 HOH A 98 2098 2098 HOH WAT . C 3 HOH A 99 2099 2099 HOH WAT . C 3 HOH A 100 2100 2100 HOH WAT . C 3 HOH A 101 2101 2101 HOH WAT . C 3 HOH A 102 2102 2102 HOH WAT . C 3 HOH A 103 2103 2103 HOH WAT . C 3 HOH A 104 2104 2104 HOH WAT . C 3 HOH A 105 2105 2105 HOH WAT . C 3 HOH A 106 2106 2106 HOH WAT . C 3 HOH A 107 2107 2107 HOH WAT . C 3 HOH A 108 2108 2108 HOH WAT . C 3 HOH A 109 2109 2109 HOH WAT . C 3 HOH A 110 2110 2110 HOH WAT . C 3 HOH A 111 2111 2111 HOH WAT . C 3 HOH A 112 2112 2112 HOH WAT . C 3 HOH A 113 2113 2113 HOH WAT . C 3 HOH A 114 2114 2114 HOH WAT . C 3 HOH A 115 2115 2115 HOH WAT . C 3 HOH A 116 2116 2116 HOH WAT . C 3 HOH A 117 2117 2117 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 12.665 126.537 1.633 1 78.77 ? C1 NAG 1001 A 1 HETATM 2 C C2 NAG . . . B 2 14.012 126.417 2.334 1 83.73 ? C2 NAG 1001 A 1 HETATM 3 C C3 NAG . . . B 2 14.185 124.995 2.93 1 87.44 ? C3 NAG 1001 A 1 HETATM 4 C C4 NAG . . . B 2 12.831 124.397 3.37 1 88.91 ? C4 NAG 1001 A 1 HETATM 5 C C5 NAG . . . B 2 11.856 124.341 2.174 1 87.54 ? C5 NAG 1001 A 1 HETATM 6 C C6 NAG . . . B 2 10.418 124.67 2.548 1 87.27 ? C6 NAG 1001 A 1 HETATM 7 C C7 NAG . . . B 2 16.347 126.412 1.787 1 88.44 ? C7 NAG 1001 A 1 HETATM 8 C C8 NAG . . . B 2 17.055 125.199 1.218 1 88.26 ? C8 NAG 1001 A 1 HETATM 9 N N2 NAG . . . B 2 15.091 126.634 1.39 1 86.32 ? N2 NAG 1001 A 1 HETATM 10 O O3 NAG . . . B 2 15.099 125.023 4.034 1 89.18 ? O3 NAG 1001 A 1 HETATM 11 O O4 NAG . . . B 2 13.04 123.089 3.893 1 93.3 ? O4 NAG 1001 A 1 HETATM 12 O O5 NAG . . . B 2 12.258 125.26 1.124 1 81.82 ? O5 NAG 1001 A 1 HETATM 13 O O6 NAG . . . B 2 9.933 123.696 3.461 1 88.96 ? O6 NAG 1001 A 1 HETATM 14 O O7 NAG . . . B 2 16.943 127.141 2.599 1 91.51 ? O7 NAG 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #