data_1MD9 # _model_server_result.job_id LTsSR8nTqQRBEzZnIUDozw _model_server_result.datetime_utc '2024-11-27 15:41:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1md9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 1MD9 # _exptl.entry_id 1MD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-DIHYDROXY-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MD9 _cell.length_a 66.9 _cell.length_b 66.9 _cell.length_c 114.8 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A CA GLY 191 A GLY 191 1_555 B O2P AMP . A AMP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? covale ? covale3 A C PRO 231 A PRO 231 1_555 A N MSE 232 A MSE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 232 A MSE 232 1_555 A N ALA 233 A ALA 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C ALA 283 A ALA 283 1_555 A N MSE 284 A MSE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 284 A MSE 284 1_555 A N VAL 285 A VAL 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C TRP 286 A TRP 286 1_555 A N MSE 287 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 287 A MSE 287 1_555 A N ASP 288 A ASP 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C GLY 331 A GLY 331 1_555 A N MSE 332 A MSE 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 A C MSE 332 A MSE 332 1_555 A N ALA 333 A ALA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C PRO 356 A PRO 356 1_555 A N MSE 357 A MSE 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 357 A MSE 357 1_555 A N SER 358 A SER 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A OD2 ASP 413 A ASP 413 1_555 B O2' AMP . A AMP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale14 A C ALA 459 A ALA 459 1_555 A N MSE 460 A MSE 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C MSE 460 A MSE 460 1_555 A N VAL 461 A VAL 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 A C SER 462 A SER 462 1_555 A N MSE 463 A MSE 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 A C MSE 463 A MSE 463 1_555 A N PRO 464 A PRO 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C7 H6 O4' _chem_comp.formula_weight 154.12 _chem_comp.id DBH _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-DIHYDROXY-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MD9 _atom_sites.fract_transf_matrix[1][1] 0.014948 _atom_sites.fract_transf_matrix[1][2] 0.00863 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 600 600 AMP AMP . C 3 DBH A 1 601 601 DBH DBH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O17 DBH . . . C 3 -2.679 18.996 33.395 1 22.44 ? O17 DBH 601 A 1 HETATM 2 C C21 DBH . . . C 3 -4.075 19.183 33.144 1 21.4 ? C21 DBH 601 A 1 HETATM 3 O O9 DBH . . . C 3 -4.698 19.883 33.918 1 25.07 ? O9 DBH 601 A 1 HETATM 4 C C18 DBH . . . C 3 -4.831 18.557 31.974 1 20.58 ? C18 DBH 601 A 1 HETATM 5 C C15 DBH . . . C 3 -4.444 17.294 31.451 1 19.98 ? C15 DBH 601 A 1 HETATM 6 C C12 DBH . . . C 3 -5.149 16.712 30.358 1 19.52 ? C12 DBH 601 A 1 HETATM 7 C C3 DBH . . . C 3 -5.933 19.233 31.378 1 19.15 ? C3 DBH 601 A 1 HETATM 8 O O3 DBH . . . C 3 -6.351 20.493 31.858 1 18.33 ? O3 DBH 601 A 1 HETATM 9 C C6 DBH . . . C 3 -6.637 18.643 30.291 1 19.53 ? C6 DBH 601 A 1 HETATM 10 C C9 DBH . . . C 3 -6.245 17.402 29.789 1 19.68 ? C9 DBH 601 A 1 HETATM 11 O O6 DBH . . . C 3 -7.726 19.302 29.703 1 23.83 ? O6 DBH 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #