data_1MDB # _model_server_result.job_id jVQPgBuTxBre4QKIusdMwA _model_server_result.datetime_utc '2024-12-02 23:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 1MDB # _exptl.entry_id 1MDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-DIHYDROXY-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MDB _cell.length_a 66.8 _cell.length_b 66.8 _cell.length_c 115.66 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id O3P _struct_conn.ptnr1_label_comp_id AMP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id AMP _struct_conn.ptnr1_auth_seq_id 600 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id DBH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DBH _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.185 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H6 O4' _chem_comp.formula_weight 154.12 _chem_comp.id DBH _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-DIHYDROXY-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C21 DBH sing 122 n n O17 HO17 DBH sing 123 n n C21 O9 DBH doub 124 n n C21 C18 DBH sing 125 n n C18 C15 DBH doub 126 n y C18 C3 DBH sing 127 n y C15 C12 DBH sing 128 n y C15 HC15 DBH sing 129 n n C12 C9 DBH doub 130 n y C12 HC12 DBH sing 131 n n C3 O3 DBH sing 132 n n C3 C6 DBH doub 133 n y O3 HO3 DBH sing 134 n n C6 C9 DBH sing 135 n y C6 O6 DBH sing 136 n n C9 HC9 DBH sing 137 n n O6 HO6 DBH sing 138 n n # _atom_sites.entry_id 1MDB _atom_sites.fract_transf_matrix[1][1] 0.01497 _atom_sites.fract_transf_matrix[1][2] 0.008643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 999 999 SO4 SO4 . C 2 SO4 A 1 997 997 SO4 SO4 . D 3 AMP A 1 600 600 AMP AMP . E 4 DBH A 1 601 601 DBH DBH . F 5 HOH A 1 603 603 HOH HOH . F 5 HOH A 2 607 607 HOH HOH . F 5 HOH A 3 608 608 HOH HOH . F 5 HOH A 4 609 609 HOH HOH . F 5 HOH A 5 611 611 HOH HOH . F 5 HOH A 6 613 613 HOH HOH . F 5 HOH A 7 614 614 HOH HOH . F 5 HOH A 8 616 616 HOH HOH . F 5 HOH A 9 617 617 HOH HOH . F 5 HOH A 10 618 618 HOH HOH . F 5 HOH A 11 621 621 HOH HOH . F 5 HOH A 12 622 622 HOH HOH . F 5 HOH A 13 623 623 HOH HOH . F 5 HOH A 14 624 624 HOH HOH . F 5 HOH A 15 626 626 HOH HOH . F 5 HOH A 16 628 628 HOH HOH . F 5 HOH A 17 629 629 HOH HOH . F 5 HOH A 18 632 632 HOH HOH . F 5 HOH A 19 633 633 HOH HOH . F 5 HOH A 20 634 634 HOH HOH . F 5 HOH A 21 635 635 HOH HOH . F 5 HOH A 22 636 636 HOH HOH . F 5 HOH A 23 637 637 HOH HOH . F 5 HOH A 24 638 638 HOH HOH . F 5 HOH A 25 639 639 HOH HOH . F 5 HOH A 26 643 643 HOH HOH . F 5 HOH A 27 645 645 HOH HOH . F 5 HOH A 28 646 646 HOH HOH . F 5 HOH A 29 647 647 HOH HOH . F 5 HOH A 30 649 649 HOH HOH . F 5 HOH A 31 650 650 HOH HOH . F 5 HOH A 32 651 651 HOH HOH . F 5 HOH A 33 652 652 HOH HOH . F 5 HOH A 34 653 653 HOH HOH . F 5 HOH A 35 655 655 HOH HOH . F 5 HOH A 36 658 658 HOH HOH . F 5 HOH A 37 663 663 HOH HOH . F 5 HOH A 38 664 664 HOH HOH . F 5 HOH A 39 666 666 HOH HOH . F 5 HOH A 40 669 669 HOH HOH . F 5 HOH A 41 673 673 HOH HOH . F 5 HOH A 42 674 674 HOH HOH . F 5 HOH A 43 675 675 HOH HOH . F 5 HOH A 44 679 679 HOH HOH . F 5 HOH A 45 681 681 HOH HOH . F 5 HOH A 46 682 682 HOH HOH . F 5 HOH A 47 684 684 HOH HOH . F 5 HOH A 48 685 685 HOH HOH . F 5 HOH A 49 686 686 HOH HOH . F 5 HOH A 50 687 687 HOH HOH . F 5 HOH A 51 688 688 HOH HOH . F 5 HOH A 52 690 690 HOH HOH . F 5 HOH A 53 691 691 HOH HOH . F 5 HOH A 54 697 697 HOH HOH . F 5 HOH A 55 699 699 HOH HOH . F 5 HOH A 56 707 707 HOH HOH . F 5 HOH A 57 710 710 HOH HOH . F 5 HOH A 58 716 716 HOH HOH . F 5 HOH A 59 717 717 HOH HOH . F 5 HOH A 60 719 719 HOH HOH . F 5 HOH A 61 723 723 HOH HOH . F 5 HOH A 62 725 725 HOH HOH . F 5 HOH A 63 726 726 HOH HOH . F 5 HOH A 64 727 727 HOH HOH . F 5 HOH A 65 728 728 HOH HOH . F 5 HOH A 66 730 730 HOH HOH . F 5 HOH A 67 732 732 HOH HOH . F 5 HOH A 68 735 735 HOH HOH . F 5 HOH A 69 736 736 HOH HOH . F 5 HOH A 70 737 737 HOH HOH . F 5 HOH A 71 738 738 HOH HOH . F 5 HOH A 72 739 739 HOH HOH . F 5 HOH A 73 740 740 HOH HOH . F 5 HOH A 74 741 741 HOH HOH . F 5 HOH A 75 742 742 HOH HOH . F 5 HOH A 76 746 746 HOH HOH . F 5 HOH A 77 747 747 HOH HOH . F 5 HOH A 78 748 748 HOH HOH . F 5 HOH A 79 749 749 HOH HOH . F 5 HOH A 80 752 752 HOH HOH . F 5 HOH A 81 757 757 HOH HOH . F 5 HOH A 82 761 761 HOH HOH . F 5 HOH A 83 762 762 HOH HOH . F 5 HOH A 84 765 765 HOH HOH . F 5 HOH A 85 766 766 HOH HOH . F 5 HOH A 86 767 767 HOH HOH . F 5 HOH A 87 768 768 HOH HOH . F 5 HOH A 88 769 769 HOH HOH . F 5 HOH A 89 774 774 HOH HOH . F 5 HOH A 90 775 775 HOH HOH . F 5 HOH A 91 776 776 HOH HOH . F 5 HOH A 92 777 777 HOH HOH . F 5 HOH A 93 778 778 HOH HOH . F 5 HOH A 94 780 780 HOH HOH . F 5 HOH A 95 781 781 HOH HOH . F 5 HOH A 96 782 782 HOH HOH . F 5 HOH A 97 783 783 HOH HOH . F 5 HOH A 98 784 784 HOH HOH . F 5 HOH A 99 785 785 HOH HOH . F 5 HOH A 100 786 786 HOH HOH . F 5 HOH A 101 788 788 HOH HOH . F 5 HOH A 102 789 789 HOH HOH . F 5 HOH A 103 791 791 HOH HOH . F 5 HOH A 104 792 792 HOH HOH . F 5 HOH A 105 795 795 HOH HOH . F 5 HOH A 106 796 796 HOH HOH . F 5 HOH A 107 798 798 HOH HOH . F 5 HOH A 108 799 799 HOH HOH . F 5 HOH A 109 800 800 HOH HOH . F 5 HOH A 110 806 806 HOH HOH . F 5 HOH A 111 810 810 HOH HOH . F 5 HOH A 112 811 811 HOH HOH . F 5 HOH A 113 812 812 HOH HOH . F 5 HOH A 114 813 813 HOH HOH . F 5 HOH A 115 821 821 HOH HOH . F 5 HOH A 116 825 825 HOH HOH . F 5 HOH A 117 826 826 HOH HOH . F 5 HOH A 118 827 827 HOH HOH . F 5 HOH A 119 829 829 HOH HOH . F 5 HOH A 120 831 831 HOH HOH . F 5 HOH A 121 833 833 HOH HOH . F 5 HOH A 122 836 836 HOH HOH . F 5 HOH A 123 839 839 HOH HOH . F 5 HOH A 124 840 840 HOH HOH . F 5 HOH A 125 841 841 HOH HOH . F 5 HOH A 126 842 842 HOH HOH . F 5 HOH A 127 843 843 HOH HOH . F 5 HOH A 128 844 844 HOH HOH . F 5 HOH A 129 845 845 HOH HOH . F 5 HOH A 130 846 846 HOH HOH . F 5 HOH A 131 853 853 HOH HOH . F 5 HOH A 132 854 854 HOH HOH . F 5 HOH A 133 856 856 HOH HOH . F 5 HOH A 134 857 857 HOH HOH . F 5 HOH A 135 860 860 HOH HOH . F 5 HOH A 136 863 863 HOH HOH . F 5 HOH A 137 864 864 HOH HOH . F 5 HOH A 138 867 867 HOH HOH . F 5 HOH A 139 869 869 HOH HOH . F 5 HOH A 140 871 871 HOH HOH . F 5 HOH A 141 874 874 HOH HOH . F 5 HOH A 142 877 877 HOH HOH . F 5 HOH A 143 880 880 HOH HOH . F 5 HOH A 144 881 881 HOH HOH . F 5 HOH A 145 882 882 HOH HOH . F 5 HOH A 146 883 883 HOH HOH . F 5 HOH A 147 885 885 HOH HOH . F 5 HOH A 148 889 889 HOH HOH . F 5 HOH A 149 891 891 HOH HOH . F 5 HOH A 150 895 895 HOH HOH . F 5 HOH A 151 898 898 HOH HOH . F 5 HOH A 152 899 899 HOH HOH . F 5 HOH A 153 900 900 HOH HOH . F 5 HOH A 154 996 996 HOH HOH . F 5 HOH A 155 998 998 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 DBH . . . E 4 -4.201 18.937 33.095 1 37.74 ? C21 DBH 601 A 1 HETATM 2 O O9 DBH . . . E 4 -3.172 18.239 33.594 1 41.58 ? O9 DBH 601 A 1 HETATM 3 C C18 DBH . . . E 4 -5.013 18.469 31.943 1 38.15 ? C18 DBH 601 A 1 HETATM 4 C C15 DBH . . . E 4 -4.755 17.19 31.365 1 36.66 ? C15 DBH 601 A 1 HETATM 5 C C12 DBH . . . E 4 -5.504 16.74 30.258 1 35.53 ? C12 DBH 601 A 1 HETATM 6 C C3 DBH . . . E 4 -6.041 19.301 31.396 1 38.44 ? C3 DBH 601 A 1 HETATM 7 O O3 DBH . . . E 4 -6.348 20.571 31.923 1 34.01 ? O3 DBH 601 A 1 HETATM 8 C C6 DBH . . . E 4 -6.785 18.847 30.289 1 36.87 ? C6 DBH 601 A 1 HETATM 9 C C9 DBH . . . E 4 -6.524 17.579 29.716 1 37.26 ? C9 DBH 601 A 1 HETATM 10 O O6 DBH . . . E 4 -7.77 19.646 29.755 1 43.05 ? O6 DBH 601 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #