data_1MDB
#
_model_server_result.job_id            4IDkv6Xu3BBhsWTHZm1j7w 
_model_server_result.datetime_utc      '2024-11-05 16:18:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":997}' 
#
_entry.id    1MDB 
#
_exptl.entry_id    1MDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1MDB 
_cell.length_a            66.8 
_cell.length_b            66.8 
_cell.length_c            115.66 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            O3P 
_struct_conn.ptnr1_label_comp_id            AMP 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             AMP 
_struct_conn.ptnr1_auth_seq_id              600 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            C21 
_struct_conn.ptnr2_label_comp_id            DBH 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             DBH 
_struct_conn.ptnr2_auth_seq_id              601 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.185 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 346 n n 
S O2 SO4 doub 347 n n 
S O3 SO4 sing 348 n n 
S O4 SO4 sing 349 n n 
#
_atom_sites.entry_id                     1MDB 
_atom_sites.fract_transf_matrix[1][1]    0.01497 
_atom_sites.fract_transf_matrix[1][2]    0.008643 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017286 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008646 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 999 999 SO4 SO4 . 
C 2 SO4 A 1 997 997 SO4 SO4 . 
D 3 AMP A 1 600 600 AMP AMP . 
E 4 DBH A 1 601 601 DBH DBH . 
F 5 HOH A 1 603 603 HOH HOH . 
F 5 HOH A 2 607 607 HOH HOH . 
F 5 HOH A 3 608 608 HOH HOH . 
F 5 HOH A 4 609 609 HOH HOH . 
F 5 HOH A 5 611 611 HOH HOH . 
F 5 HOH A 6 613 613 HOH HOH . 
F 5 HOH A 7 614 614 HOH HOH . 
F 5 HOH A 8 616 616 HOH HOH . 
F 5 HOH A 9 617 617 HOH HOH . 
F 5 HOH A 10 618 618 HOH HOH . 
F 5 HOH A 11 621 621 HOH HOH . 
F 5 HOH A 12 622 622 HOH HOH . 
F 5 HOH A 13 623 623 HOH HOH . 
F 5 HOH A 14 624 624 HOH HOH . 
F 5 HOH A 15 626 626 HOH HOH . 
F 5 HOH A 16 628 628 HOH HOH . 
F 5 HOH A 17 629 629 HOH HOH . 
F 5 HOH A 18 632 632 HOH HOH . 
F 5 HOH A 19 633 633 HOH HOH . 
F 5 HOH A 20 634 634 HOH HOH . 
F 5 HOH A 21 635 635 HOH HOH . 
F 5 HOH A 22 636 636 HOH HOH . 
F 5 HOH A 23 637 637 HOH HOH . 
F 5 HOH A 24 638 638 HOH HOH . 
F 5 HOH A 25 639 639 HOH HOH . 
F 5 HOH A 26 643 643 HOH HOH . 
F 5 HOH A 27 645 645 HOH HOH . 
F 5 HOH A 28 646 646 HOH HOH . 
F 5 HOH A 29 647 647 HOH HOH . 
F 5 HOH A 30 649 649 HOH HOH . 
F 5 HOH A 31 650 650 HOH HOH . 
F 5 HOH A 32 651 651 HOH HOH . 
F 5 HOH A 33 652 652 HOH HOH . 
F 5 HOH A 34 653 653 HOH HOH . 
F 5 HOH A 35 655 655 HOH HOH . 
F 5 HOH A 36 658 658 HOH HOH . 
F 5 HOH A 37 663 663 HOH HOH . 
F 5 HOH A 38 664 664 HOH HOH . 
F 5 HOH A 39 666 666 HOH HOH . 
F 5 HOH A 40 669 669 HOH HOH . 
F 5 HOH A 41 673 673 HOH HOH . 
F 5 HOH A 42 674 674 HOH HOH . 
F 5 HOH A 43 675 675 HOH HOH . 
F 5 HOH A 44 679 679 HOH HOH . 
F 5 HOH A 45 681 681 HOH HOH . 
F 5 HOH A 46 682 682 HOH HOH . 
F 5 HOH A 47 684 684 HOH HOH . 
F 5 HOH A 48 685 685 HOH HOH . 
F 5 HOH A 49 686 686 HOH HOH . 
F 5 HOH A 50 687 687 HOH HOH . 
F 5 HOH A 51 688 688 HOH HOH . 
F 5 HOH A 52 690 690 HOH HOH . 
F 5 HOH A 53 691 691 HOH HOH . 
F 5 HOH A 54 697 697 HOH HOH . 
F 5 HOH A 55 699 699 HOH HOH . 
F 5 HOH A 56 707 707 HOH HOH . 
F 5 HOH A 57 710 710 HOH HOH . 
F 5 HOH A 58 716 716 HOH HOH . 
F 5 HOH A 59 717 717 HOH HOH . 
F 5 HOH A 60 719 719 HOH HOH . 
F 5 HOH A 61 723 723 HOH HOH . 
F 5 HOH A 62 725 725 HOH HOH . 
F 5 HOH A 63 726 726 HOH HOH . 
F 5 HOH A 64 727 727 HOH HOH . 
F 5 HOH A 65 728 728 HOH HOH . 
F 5 HOH A 66 730 730 HOH HOH . 
F 5 HOH A 67 732 732 HOH HOH . 
F 5 HOH A 68 735 735 HOH HOH . 
F 5 HOH A 69 736 736 HOH HOH . 
F 5 HOH A 70 737 737 HOH HOH . 
F 5 HOH A 71 738 738 HOH HOH . 
F 5 HOH A 72 739 739 HOH HOH . 
F 5 HOH A 73 740 740 HOH HOH . 
F 5 HOH A 74 741 741 HOH HOH . 
F 5 HOH A 75 742 742 HOH HOH . 
F 5 HOH A 76 746 746 HOH HOH . 
F 5 HOH A 77 747 747 HOH HOH . 
F 5 HOH A 78 748 748 HOH HOH . 
F 5 HOH A 79 749 749 HOH HOH . 
F 5 HOH A 80 752 752 HOH HOH . 
F 5 HOH A 81 757 757 HOH HOH . 
F 5 HOH A 82 761 761 HOH HOH . 
F 5 HOH A 83 762 762 HOH HOH . 
F 5 HOH A 84 765 765 HOH HOH . 
F 5 HOH A 85 766 766 HOH HOH . 
F 5 HOH A 86 767 767 HOH HOH . 
F 5 HOH A 87 768 768 HOH HOH . 
F 5 HOH A 88 769 769 HOH HOH . 
F 5 HOH A 89 774 774 HOH HOH . 
F 5 HOH A 90 775 775 HOH HOH . 
F 5 HOH A 91 776 776 HOH HOH . 
F 5 HOH A 92 777 777 HOH HOH . 
F 5 HOH A 93 778 778 HOH HOH . 
F 5 HOH A 94 780 780 HOH HOH . 
F 5 HOH A 95 781 781 HOH HOH . 
F 5 HOH A 96 782 782 HOH HOH . 
F 5 HOH A 97 783 783 HOH HOH . 
F 5 HOH A 98 784 784 HOH HOH . 
F 5 HOH A 99 785 785 HOH HOH . 
F 5 HOH A 100 786 786 HOH HOH . 
F 5 HOH A 101 788 788 HOH HOH . 
F 5 HOH A 102 789 789 HOH HOH . 
F 5 HOH A 103 791 791 HOH HOH . 
F 5 HOH A 104 792 792 HOH HOH . 
F 5 HOH A 105 795 795 HOH HOH . 
F 5 HOH A 106 796 796 HOH HOH . 
F 5 HOH A 107 798 798 HOH HOH . 
F 5 HOH A 108 799 799 HOH HOH . 
F 5 HOH A 109 800 800 HOH HOH . 
F 5 HOH A 110 806 806 HOH HOH . 
F 5 HOH A 111 810 810 HOH HOH . 
F 5 HOH A 112 811 811 HOH HOH . 
F 5 HOH A 113 812 812 HOH HOH . 
F 5 HOH A 114 813 813 HOH HOH . 
F 5 HOH A 115 821 821 HOH HOH . 
F 5 HOH A 116 825 825 HOH HOH . 
F 5 HOH A 117 826 826 HOH HOH . 
F 5 HOH A 118 827 827 HOH HOH . 
F 5 HOH A 119 829 829 HOH HOH . 
F 5 HOH A 120 831 831 HOH HOH . 
F 5 HOH A 121 833 833 HOH HOH . 
F 5 HOH A 122 836 836 HOH HOH . 
F 5 HOH A 123 839 839 HOH HOH . 
F 5 HOH A 124 840 840 HOH HOH . 
F 5 HOH A 125 841 841 HOH HOH . 
F 5 HOH A 126 842 842 HOH HOH . 
F 5 HOH A 127 843 843 HOH HOH . 
F 5 HOH A 128 844 844 HOH HOH . 
F 5 HOH A 129 845 845 HOH HOH . 
F 5 HOH A 130 846 846 HOH HOH . 
F 5 HOH A 131 853 853 HOH HOH . 
F 5 HOH A 132 854 854 HOH HOH . 
F 5 HOH A 133 856 856 HOH HOH . 
F 5 HOH A 134 857 857 HOH HOH . 
F 5 HOH A 135 860 860 HOH HOH . 
F 5 HOH A 136 863 863 HOH HOH . 
F 5 HOH A 137 864 864 HOH HOH . 
F 5 HOH A 138 867 867 HOH HOH . 
F 5 HOH A 139 869 869 HOH HOH . 
F 5 HOH A 140 871 871 HOH HOH . 
F 5 HOH A 141 874 874 HOH HOH . 
F 5 HOH A 142 877 877 HOH HOH . 
F 5 HOH A 143 880 880 HOH HOH . 
F 5 HOH A 144 881 881 HOH HOH . 
F 5 HOH A 145 882 882 HOH HOH . 
F 5 HOH A 146 883 883 HOH HOH . 
F 5 HOH A 147 885 885 HOH HOH . 
F 5 HOH A 148 889 889 HOH HOH . 
F 5 HOH A 149 891 891 HOH HOH . 
F 5 HOH A 150 895 895 HOH HOH . 
F 5 HOH A 151 898 898 HOH HOH . 
F 5 HOH A 152 899 899 HOH HOH . 
F 5 HOH A 153 900 900 HOH HOH . 
F 5 HOH A 154 996 996 HOH HOH . 
F 5 HOH A 155 998 998 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . C 2 9.038 15.166 12.924 1 69.7 ? S SO4 997 A 1 
HETATM 2 O O1 SO4 . . . C 2 8.981 14.194 14.034 1 68.2 ? O1 SO4 997 A 1 
HETATM 3 O O2 SO4 . . . C 2 9.906 14.64 11.852 1 69 ? O2 SO4 997 A 1 
HETATM 4 O O3 SO4 . . . C 2 7.679 15.385 12.393 1 68.31 ? O3 SO4 997 A 1 
HETATM 5 O O4 SO4 . . . C 2 9.585 16.447 13.416 1 69.13 ? O4 SO4 997 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#