data_1MDR # _model_server_result.job_id O85wLY6WIrWLQ7sta0oKRg _model_server_result.datetime_utc '2024-10-19 01:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":399}' # _entry.id 1MDR # _exptl.entry_id 1MDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ATROLACTIC ACID (2-PHENYL-LACTIC ACID)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MDR _cell.length_a 125.15 _cell.length_b 125.15 _cell.length_c 105.65 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 195 A ASP 195 1_555 B MG MG . A MG 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc2 A OE2 GLU 221 A GLU 221 1_555 B MG MG . A MG 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc3 A OE1 GLU 247 A GLU 247 1_555 B MG MG . A MG 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 B MG MG . A MG 360 1_555 C O17 APG . A APG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 B MG MG . A MG 360 1_555 C O15 APG . A APG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc6 B MG MG . A MG 360 1_555 D O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C9 H10 O3' _chem_comp.formula_weight 166.174 _chem_comp.id APG _chem_comp.mon_nstd_flag . _chem_comp.name 'ATROLACTIC ACID (2-PHENYL-LACTIC ACID)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 APG doub 13 n y C1 C6 APG sing 14 n y C1 H1 APG sing 15 n n C2 C3 APG sing 16 n y C2 H2 APG sing 17 n n C3 C4 APG doub 18 n y C3 C12 APG sing 19 n n C4 C5 APG sing 20 n y C4 H4 APG sing 21 n n C5 C6 APG doub 22 n y C5 H5 APG sing 23 n n C6 H6 APG sing 24 n n C12 O17 APG sing 25 n n C12 C13 APG sing 26 n n C12 C14 APG sing 27 n n O17 HO17 APG sing 28 n n C13 O14 APG doub 29 n n C13 O15 APG sing 30 n n C14 H141 APG sing 31 n n C14 H142 APG sing 32 n n C14 H143 APG sing 33 n n O15 HO15 APG sing 34 n n # _atom_sites.entry_id 1MDR _atom_sites.fract_transf_matrix[1][1] 0.00799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 360 360 MG MG . C 3 APG A 1 399 399 APG SAA . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 423 423 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 425 425 HOH HOH . D 4 HOH A 26 426 426 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 429 HOH HOH . D 4 HOH A 30 430 430 HOH HOH . D 4 HOH A 31 431 431 HOH HOH . D 4 HOH A 32 432 432 HOH HOH . D 4 HOH A 33 433 433 HOH HOH . D 4 HOH A 34 436 436 HOH HOH . D 4 HOH A 35 437 437 HOH HOH . D 4 HOH A 36 438 438 HOH HOH . D 4 HOH A 37 439 439 HOH HOH . D 4 HOH A 38 440 440 HOH HOH . D 4 HOH A 39 441 441 HOH HOH . D 4 HOH A 40 442 442 HOH HOH . D 4 HOH A 41 443 443 HOH HOH . D 4 HOH A 42 444 444 HOH HOH . D 4 HOH A 43 445 445 HOH HOH . D 4 HOH A 44 446 446 HOH HOH . D 4 HOH A 45 447 447 HOH HOH . D 4 HOH A 46 448 448 HOH HOH . D 4 HOH A 47 449 449 HOH HOH . D 4 HOH A 48 450 450 HOH HOH . D 4 HOH A 49 451 451 HOH HOH . D 4 HOH A 50 452 452 HOH HOH . D 4 HOH A 51 453 453 HOH HOH . D 4 HOH A 52 455 455 HOH HOH . D 4 HOH A 53 456 456 HOH HOH . D 4 HOH A 54 457 457 HOH HOH . D 4 HOH A 55 458 458 HOH HOH . D 4 HOH A 56 460 460 HOH HOH . D 4 HOH A 57 461 461 HOH HOH . D 4 HOH A 58 462 462 HOH HOH . D 4 HOH A 59 463 463 HOH HOH . D 4 HOH A 60 464 464 HOH HOH . D 4 HOH A 61 465 465 HOH HOH . D 4 HOH A 62 466 466 HOH HOH . D 4 HOH A 63 467 467 HOH HOH . D 4 HOH A 64 468 468 HOH HOH . D 4 HOH A 65 469 469 HOH HOH . D 4 HOH A 66 470 470 HOH HOH . D 4 HOH A 67 471 471 HOH HOH . D 4 HOH A 68 472 472 HOH HOH . D 4 HOH A 69 473 473 HOH HOH . D 4 HOH A 70 474 474 HOH HOH . D 4 HOH A 71 475 475 HOH HOH . D 4 HOH A 72 476 476 HOH HOH . D 4 HOH A 73 477 477 HOH HOH . D 4 HOH A 74 478 478 HOH HOH . D 4 HOH A 75 479 479 HOH HOH . D 4 HOH A 76 480 480 HOH HOH . D 4 HOH A 77 483 483 HOH HOH . D 4 HOH A 78 484 484 HOH HOH . D 4 HOH A 79 485 485 HOH HOH . D 4 HOH A 80 486 486 HOH HOH . D 4 HOH A 81 487 487 HOH HOH . D 4 HOH A 82 488 488 HOH HOH . D 4 HOH A 83 489 489 HOH HOH . D 4 HOH A 84 491 491 HOH HOH . D 4 HOH A 85 492 492 HOH HOH . D 4 HOH A 86 493 493 HOH HOH . D 4 HOH A 87 494 494 HOH HOH . D 4 HOH A 88 495 495 HOH HOH . D 4 HOH A 89 496 496 HOH HOH . D 4 HOH A 90 497 497 HOH HOH . D 4 HOH A 91 498 498 HOH HOH . D 4 HOH A 92 499 499 HOH HOH . D 4 HOH A 93 500 500 HOH HOH . D 4 HOH A 94 501 501 HOH HOH . D 4 HOH A 95 502 502 HOH HOH . D 4 HOH A 96 503 503 HOH HOH . D 4 HOH A 97 504 504 HOH HOH . D 4 HOH A 98 505 505 HOH HOH . D 4 HOH A 99 506 506 HOH HOH . D 4 HOH A 100 507 507 HOH HOH . D 4 HOH A 101 508 508 HOH HOH . D 4 HOH A 102 509 509 HOH HOH . D 4 HOH A 103 511 511 HOH HOH . D 4 HOH A 104 512 512 HOH HOH . D 4 HOH A 105 513 513 HOH HOH . D 4 HOH A 106 514 514 HOH HOH . D 4 HOH A 107 515 515 HOH HOH . D 4 HOH A 108 516 516 HOH HOH . D 4 HOH A 109 517 517 HOH HOH . D 4 HOH A 110 518 518 HOH HOH . D 4 HOH A 111 519 519 HOH HOH . D 4 HOH A 112 521 521 HOH HOH . D 4 HOH A 113 522 522 HOH HOH . D 4 HOH A 114 523 523 HOH HOH . D 4 HOH A 115 524 524 HOH HOH . D 4 HOH A 116 526 526 HOH HOH . D 4 HOH A 117 527 527 HOH HOH . D 4 HOH A 118 528 528 HOH HOH . D 4 HOH A 119 529 529 HOH HOH . D 4 HOH A 120 531 531 HOH HOH . D 4 HOH A 121 532 532 HOH HOH . D 4 HOH A 122 533 533 HOH HOH . D 4 HOH A 123 536 536 HOH HOH . D 4 HOH A 124 537 537 HOH HOH . D 4 HOH A 125 538 538 HOH HOH . D 4 HOH A 126 541 541 HOH HOH . D 4 HOH A 127 542 542 HOH HOH . D 4 HOH A 128 543 543 HOH HOH . D 4 HOH A 129 544 544 HOH HOH . D 4 HOH A 130 545 545 HOH HOH . D 4 HOH A 131 546 546 HOH HOH . D 4 HOH A 132 548 548 HOH HOH . D 4 HOH A 133 550 550 HOH HOH . D 4 HOH A 134 553 553 HOH HOH . D 4 HOH A 135 555 555 HOH HOH . D 4 HOH A 136 556 556 HOH HOH . D 4 HOH A 137 558 558 HOH HOH . D 4 HOH A 138 560 560 HOH HOH . D 4 HOH A 139 561 561 HOH HOH . D 4 HOH A 140 562 562 HOH HOH . D 4 HOH A 141 563 563 HOH HOH . D 4 HOH A 142 565 565 HOH HOH . D 4 HOH A 143 566 566 HOH HOH . D 4 HOH A 144 567 567 HOH HOH . D 4 HOH A 145 568 568 HOH HOH . D 4 HOH A 146 569 569 HOH HOH . D 4 HOH A 147 570 570 HOH HOH . D 4 HOH A 148 571 571 HOH HOH . D 4 HOH A 149 572 572 HOH HOH . D 4 HOH A 150 573 573 HOH HOH . D 4 HOH A 151 574 574 HOH HOH . D 4 HOH A 152 575 575 HOH HOH . D 4 HOH A 153 576 576 HOH HOH . D 4 HOH A 154 577 577 HOH HOH . D 4 HOH A 155 578 578 HOH HOH . D 4 HOH A 156 579 579 HOH HOH . D 4 HOH A 157 580 580 HOH HOH . D 4 HOH A 158 582 582 HOH HOH . D 4 HOH A 159 584 584 HOH HOH . D 4 HOH A 160 586 586 HOH HOH . D 4 HOH A 161 587 587 HOH HOH . D 4 HOH A 162 590 590 HOH HOH . D 4 HOH A 163 591 591 HOH HOH . D 4 HOH A 164 593 593 HOH HOH . D 4 HOH A 165 594 594 HOH HOH . D 4 HOH A 166 596 596 HOH HOH . D 4 HOH A 167 597 597 HOH HOH . D 4 HOH A 168 598 598 HOH HOH . D 4 HOH A 169 600 600 HOH HOH . D 4 HOH A 170 601 601 HOH HOH . D 4 HOH A 171 603 603 HOH HOH . D 4 HOH A 172 604 604 HOH HOH . D 4 HOH A 173 605 605 HOH HOH . D 4 HOH A 174 607 607 HOH HOH . D 4 HOH A 175 608 608 HOH HOH . D 4 HOH A 176 609 609 HOH HOH . D 4 HOH A 177 610 610 HOH HOH . D 4 HOH A 178 611 611 HOH HOH . D 4 HOH A 179 612 612 HOH HOH . D 4 HOH A 180 613 613 HOH HOH . D 4 HOH A 181 614 614 HOH HOH . D 4 HOH A 182 615 615 HOH HOH . D 4 HOH A 183 616 616 HOH HOH . D 4 HOH A 184 618 618 HOH HOH . D 4 HOH A 185 620 620 HOH HOH . D 4 HOH A 186 621 621 HOH HOH . D 4 HOH A 187 622 622 HOH HOH . D 4 HOH A 188 623 623 HOH HOH . D 4 HOH A 189 625 625 HOH HOH . D 4 HOH A 190 626 626 HOH HOH . D 4 HOH A 191 627 627 HOH HOH . D 4 HOH A 192 628 628 HOH HOH . D 4 HOH A 193 629 629 HOH HOH . D 4 HOH A 194 630 630 HOH HOH . D 4 HOH A 195 631 631 HOH HOH . D 4 HOH A 196 632 632 HOH HOH . D 4 HOH A 197 633 633 HOH HOH . D 4 HOH A 198 634 634 HOH HOH . D 4 HOH A 199 635 635 HOH HOH . D 4 HOH A 200 636 636 HOH HOH . D 4 HOH A 201 637 637 HOH HOH . D 4 HOH A 202 638 638 HOH HOH . D 4 HOH A 203 639 639 HOH HOH . D 4 HOH A 204 640 640 HOH HOH . D 4 HOH A 205 641 641 HOH HOH . D 4 HOH A 206 642 642 HOH HOH . D 4 HOH A 207 643 643 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 APG . . . C 3 33.412 5.242 17.169 1 20.61 ? C1 APG 399 A 1 HETATM 2 C C2 APG . . . C 3 32.13 5.379 17.703 1 21.42 ? C2 APG 399 A 1 HETATM 3 C C3 APG . . . C 3 31.104 4.488 17.37 1 18.08 ? C3 APG 399 A 1 HETATM 4 C C4 APG . . . C 3 31.391 3.453 16.482 1 21.21 ? C4 APG 399 A 1 HETATM 5 C C5 APG . . . C 3 32.669 3.312 15.946 1 22.87 ? C5 APG 399 A 1 HETATM 6 C C6 APG . . . C 3 33.678 4.211 16.294 1 23.16 ? C6 APG 399 A 1 HETATM 7 C C12 APG . . . C 3 29.707 4.491 18.067 1 16.98 ? C12 APG 399 A 1 HETATM 8 O O17 APG . . . C 3 28.736 3.629 17.416 1 17.58 ? O17 APG 399 A 1 HETATM 9 C C13 APG . . . C 3 29.152 5.906 18.325 1 14.5 ? C13 APG 399 A 1 HETATM 10 C C14 APG . . . C 3 29.898 3.933 19.5 1 16.11 ? C14 APG 399 A 1 HETATM 11 O O14 APG . . . C 3 29.825 6.775 18.81 1 12.09 ? O14 APG 399 A 1 HETATM 12 O O15 APG . . . C 3 27.989 6.151 18.067 1 15.88 ? O15 APG 399 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #