data_1MEI # _model_server_result.job_id k4anyt-o9vAHmYknGOlcEQ _model_server_result.datetime_utc '2024-11-01 05:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 1MEI # _exptl.entry_id 1MEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.213 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "XANTHOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MEI _cell.length_a 155.07 _cell.length_b 155.07 _cell.length_c 155.07 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 155.07 155.07 0 3 'crystal symmetry operation' 15_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 155.07 0 4 'crystal symmetry operation' 16_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 155.07 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 459 A CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 B K K . A K 900 1_555 A OG SER 22 A SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 B K K . A K 900 1_555 A N SER 22 A SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.384 ? metalc ? metalc3 B K K . A K 900 1_555 A O ASN 460 A ASN 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc4 B K K . A K 900 1_555 A O GLY 20 A GLY 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 B K K . A K 900 1_555 A OD2 ASP 264 A ASP 264 16_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 B K K . A K 900 1_555 A OD1 ASP 264 A ASP 264 16_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc7 B K K . A K 900 1_555 A O PHE 266 A PHE 266 16_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? # _chem_comp.formula 'C10 H14 N4 O9 P 1' _chem_comp.formula_weight 365.213 _chem_comp.id XMP _chem_comp.mon_nstd_flag . _chem_comp.name "XANTHOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE' # _atom_sites.entry_id 1MEI _atom_sites.fract_transf_matrix[1][1] 0.006449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 900 900 K K . C 3 XMP A 1 602 602 XMP XMP . D 4 MOA A 1 600 600 MOA MPA . E 5 HOH A 1 901 1 HOH HOH . E 5 HOH A 2 902 2 HOH HOH . E 5 HOH A 3 903 3 HOH HOH . E 5 HOH A 4 904 4 HOH HOH . E 5 HOH A 5 905 5 HOH HOH . E 5 HOH A 6 906 6 HOH HOH . E 5 HOH A 7 907 7 HOH HOH . E 5 HOH A 8 908 8 HOH HOH . E 5 HOH A 9 909 9 HOH HOH . E 5 HOH A 10 910 10 HOH HOH . E 5 HOH A 11 911 11 HOH HOH . E 5 HOH A 12 912 12 HOH HOH . E 5 HOH A 13 913 13 HOH HOH . E 5 HOH A 14 914 14 HOH HOH . E 5 HOH A 15 915 15 HOH HOH . E 5 HOH A 16 916 16 HOH HOH . E 5 HOH A 17 917 17 HOH HOH . E 5 HOH A 18 918 18 HOH HOH . E 5 HOH A 19 919 19 HOH HOH . E 5 HOH A 20 920 20 HOH HOH . E 5 HOH A 21 921 21 HOH HOH . E 5 HOH A 22 922 22 HOH HOH . E 5 HOH A 23 923 23 HOH HOH . E 5 HOH A 24 924 24 HOH HOH . E 5 HOH A 25 925 25 HOH HOH . E 5 HOH A 26 926 26 HOH HOH . E 5 HOH A 27 927 27 HOH HOH . E 5 HOH A 28 928 28 HOH HOH . E 5 HOH A 29 929 29 HOH HOH . E 5 HOH A 30 930 30 HOH HOH . E 5 HOH A 31 931 31 HOH HOH . E 5 HOH A 32 932 32 HOH HOH . E 5 HOH A 33 933 33 HOH HOH . E 5 HOH A 34 934 34 HOH HOH . E 5 HOH A 35 935 35 HOH HOH . E 5 HOH A 36 936 36 HOH HOH . E 5 HOH A 37 937 37 HOH HOH . E 5 HOH A 38 938 38 HOH HOH . E 5 HOH A 39 939 39 HOH HOH . E 5 HOH A 40 940 40 HOH HOH . E 5 HOH A 41 941 41 HOH HOH . E 5 HOH A 42 942 42 HOH HOH . E 5 HOH A 43 943 43 HOH HOH . E 5 HOH A 44 944 44 HOH HOH . E 5 HOH A 45 945 45 HOH HOH . E 5 HOH A 46 946 46 HOH HOH . E 5 HOH A 47 947 47 HOH HOH . E 5 HOH A 48 948 48 HOH HOH . E 5 HOH A 49 949 49 HOH HOH . E 5 HOH A 50 950 50 HOH HOH . E 5 HOH A 51 951 51 HOH HOH . E 5 HOH A 52 952 52 HOH HOH . E 5 HOH A 53 953 53 HOH HOH . E 5 HOH A 54 954 54 HOH HOH . E 5 HOH A 55 955 55 HOH HOH . E 5 HOH A 56 956 56 HOH HOH . E 5 HOH A 57 957 57 HOH HOH . E 5 HOH A 58 958 58 HOH HOH . E 5 HOH A 59 959 59 HOH HOH . E 5 HOH A 60 960 60 HOH HOH . E 5 HOH A 61 961 61 HOH HOH . E 5 HOH A 62 962 62 HOH HOH . E 5 HOH A 63 963 63 HOH HOH . E 5 HOH A 64 964 64 HOH HOH . E 5 HOH A 65 965 65 HOH HOH . E 5 HOH A 66 966 66 HOH HOH . E 5 HOH A 67 967 67 HOH HOH . E 5 HOH A 68 968 68 HOH HOH . E 5 HOH A 69 969 69 HOH HOH . E 5 HOH A 70 970 70 HOH HOH . E 5 HOH A 71 971 71 HOH HOH . E 5 HOH A 72 972 72 HOH HOH . E 5 HOH A 73 973 73 HOH HOH . E 5 HOH A 74 974 74 HOH HOH . E 5 HOH A 75 975 75 HOH HOH . E 5 HOH A 76 976 76 HOH HOH . E 5 HOH A 77 977 77 HOH HOH . E 5 HOH A 78 978 78 HOH HOH . E 5 HOH A 79 979 79 HOH HOH . E 5 HOH A 80 980 80 HOH HOH . E 5 HOH A 81 981 81 HOH HOH . E 5 HOH A 82 982 82 HOH HOH . E 5 HOH A 83 983 83 HOH HOH . E 5 HOH A 84 984 84 HOH HOH . E 5 HOH A 85 985 85 HOH HOH . E 5 HOH A 86 986 86 HOH HOH . E 5 HOH A 87 987 87 HOH HOH . E 5 HOH A 88 988 88 HOH HOH . E 5 HOH A 89 989 89 HOH HOH . E 5 HOH A 90 990 90 HOH HOH . E 5 HOH A 91 991 91 HOH HOH . E 5 HOH A 92 992 92 HOH HOH . E 5 HOH A 93 993 93 HOH HOH . E 5 HOH A 94 994 94 HOH HOH . E 5 HOH A 95 995 95 HOH HOH . E 5 HOH A 96 996 96 HOH HOH . E 5 HOH A 97 997 97 HOH HOH . E 5 HOH A 98 998 98 HOH HOH . E 5 HOH A 99 999 99 HOH HOH . E 5 HOH A 100 1000 100 HOH HOH . E 5 HOH A 101 1001 101 HOH HOH . E 5 HOH A 102 1002 102 HOH HOH . E 5 HOH A 103 1003 103 HOH HOH . E 5 HOH A 104 1004 104 HOH HOH . E 5 HOH A 105 1005 105 HOH HOH . E 5 HOH A 106 1006 106 HOH HOH . E 5 HOH A 107 1007 107 HOH HOH . E 5 HOH A 108 1008 108 HOH HOH . E 5 HOH A 109 1009 109 HOH HOH . E 5 HOH A 110 1010 110 HOH HOH . E 5 HOH A 111 1011 111 HOH HOH . E 5 HOH A 112 1012 112 HOH HOH . E 5 HOH A 113 1013 113 HOH HOH . E 5 HOH A 114 1014 114 HOH HOH . E 5 HOH A 115 1015 115 HOH HOH . E 5 HOH A 116 1016 116 HOH HOH . E 5 HOH A 117 1017 117 HOH HOH . E 5 HOH A 118 1018 118 HOH HOH . E 5 HOH A 119 1019 119 HOH HOH . E 5 HOH A 120 1020 120 HOH HOH . E 5 HOH A 121 1021 121 HOH HOH . E 5 HOH A 122 1022 122 HOH HOH . E 5 HOH A 123 1023 123 HOH HOH . E 5 HOH A 124 1024 124 HOH HOH . E 5 HOH A 125 1025 125 HOH HOH . E 5 HOH A 126 1026 126 HOH HOH . E 5 HOH A 127 1027 127 HOH HOH . E 5 HOH A 128 1028 128 HOH HOH . E 5 HOH A 129 1029 129 HOH HOH . E 5 HOH A 130 1030 130 HOH HOH . E 5 HOH A 131 1031 131 HOH HOH . E 5 HOH A 132 1032 132 HOH HOH . E 5 HOH A 133 1033 133 HOH HOH . E 5 HOH A 134 1034 134 HOH HOH . E 5 HOH A 135 1035 135 HOH HOH . E 5 HOH A 136 1036 136 HOH HOH . E 5 HOH A 137 1037 137 HOH HOH . E 5 HOH A 138 1038 138 HOH HOH . E 5 HOH A 139 1039 139 HOH HOH . E 5 HOH A 140 1040 140 HOH HOH . E 5 HOH A 141 1041 141 HOH HOH . E 5 HOH A 142 1042 142 HOH HOH . E 5 HOH A 143 1043 143 HOH HOH . E 5 HOH A 144 1044 144 HOH HOH . E 5 HOH A 145 1045 145 HOH HOH . E 5 HOH A 146 1046 146 HOH HOH . E 5 HOH A 147 1047 147 HOH HOH . E 5 HOH A 148 1048 148 HOH HOH . E 5 HOH A 149 1049 149 HOH HOH . E 5 HOH A 150 1050 150 HOH HOH . E 5 HOH A 151 1051 151 HOH HOH . E 5 HOH A 152 1052 152 HOH HOH . E 5 HOH A 153 1053 153 HOH HOH . E 5 HOH A 154 1054 154 HOH HOH . E 5 HOH A 155 1055 155 HOH HOH . E 5 HOH A 156 1056 156 HOH HOH . E 5 HOH A 157 1057 157 HOH HOH . E 5 HOH A 158 1058 158 HOH HOH . E 5 HOH A 159 1059 159 HOH HOH . E 5 HOH A 160 1060 160 HOH HOH . E 5 HOH A 161 1061 161 HOH HOH . E 5 HOH A 162 1062 162 HOH HOH . E 5 HOH A 163 1063 163 HOH HOH . E 5 HOH A 164 1064 164 HOH HOH . E 5 HOH A 165 1065 165 HOH HOH . E 5 HOH A 166 1066 166 HOH HOH . E 5 HOH A 167 1067 167 HOH HOH . E 5 HOH A 168 1068 168 HOH HOH . E 5 HOH A 169 1069 169 HOH HOH . E 5 HOH A 170 1070 170 HOH HOH . E 5 HOH A 171 1071 171 HOH HOH . E 5 HOH A 172 1072 172 HOH HOH . E 5 HOH A 173 1073 173 HOH HOH . E 5 HOH A 174 1074 174 HOH HOH . E 5 HOH A 175 1075 175 HOH HOH . E 5 HOH A 176 1076 176 HOH HOH . E 5 HOH A 177 1077 177 HOH HOH . E 5 HOH A 178 1078 178 HOH HOH . E 5 HOH A 179 1079 179 HOH HOH . E 5 HOH A 180 1080 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P XMP . . . C 3 68.081 55.369 14.89 1 29.26 ? P XMP 602 A 1 HETATM 2 O O1P XMP . . . C 3 67.684 55.295 13.481 1 30.18 ? O1P XMP 602 A 1 HETATM 3 O O2P XMP . . . C 3 68.902 54.234 15.354 1 31.7 ? O2P XMP 602 A 1 HETATM 4 O O5' XMP . . . C 3 66.787 55.392 15.717 1 28.83 ? O5' XMP 602 A 1 HETATM 5 O O3P XMP . . . C 3 68.651 56.672 15.275 1 30.39 ? O3P XMP 602 A 1 HETATM 6 C C5' XMP . . . C 3 65.796 54.347 15.863 1 26.57 ? C5' XMP 602 A 1 HETATM 7 C C4' XMP . . . C 3 64.756 54.593 16.96 1 26.9 ? C4' XMP 602 A 1 HETATM 8 O O4' XMP . . . C 3 63.943 55.732 16.688 1 27.02 ? O4' XMP 602 A 1 HETATM 9 C C1' XMP . . . C 3 62.618 55.681 17.18 1 27.81 ? C1' XMP 602 A 1 HETATM 10 N N9 XMP . . . C 3 61.69 55.953 16.031 1 28.12 ? N9 XMP 602 A 1 HETATM 11 C C4 XMP . . . C 3 61.248 57.183 15.601 1 28.78 ? C4 XMP 602 A 1 HETATM 12 N N3 XMP . . . C 3 61.556 58.444 16.121 1 29.01 ? N3 XMP 602 A 1 HETATM 13 N N1 XMP . . . C 3 60.086 59.258 14.353 1 29.05 ? N1 XMP 602 A 1 HETATM 14 C C2 XMP . . . C 3 60.942 59.481 15.459 1 30.77 ? C2 XMP 602 A 1 HETATM 15 O O2 XMP . . . C 3 61.128 60.639 15.829 1 31.42 ? O2 XMP 602 A 1 HETATM 16 C C6 XMP . . . C 3 59.764 57.989 13.811 1 27.88 ? C6 XMP 602 A 1 HETATM 17 O O6 XMP . . . C 3 59.015 57.875 12.853 1 28.97 ? O6 XMP 602 A 1 HETATM 18 C C5 XMP . . . C 3 60.406 56.909 14.506 1 28.31 ? C5 XMP 602 A 1 HETATM 19 N N7 XMP . . . C 3 60.325 55.573 14.268 1 27.77 ? N7 XMP 602 A 1 HETATM 20 C C8 XMP . . . C 3 61.076 55.082 15.166 1 27.54 ? C8 XMP 602 A 1 HETATM 21 C C2' XMP . . . C 3 62.604 54.298 17.878 1 26.62 ? C2' XMP 602 A 1 HETATM 22 O O2' XMP . . . C 3 62.808 54.554 19.261 1 26.73 ? O2' XMP 602 A 1 HETATM 23 C C3' XMP . . . C 3 63.705 53.537 17.141 1 26.75 ? C3' XMP 602 A 1 HETATM 24 O O3' XMP . . . C 3 64.161 52.438 17.926 1 26.88 ? O3' XMP 602 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #