data_1MEM # _model_server_result.job_id zUKChzj-KLK1NBztVoqhBQ _model_server_result.datetime_utc '2024-11-21 22:33:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":280}' # _entry.id 1MEM # _exptl.entry_id 1MEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 528.707 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MEM _cell.length_a 40.82 _cell.length_b 50.04 _cell.length_c 105.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 155 A CYS 153 1_555 A SG CYS 204 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C21 0D6 . A 0D6 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? # _chem_comp.formula 'C28 H40 N4 O4 S' _chem_comp.formula_weight 528.707 _chem_comp.id 0D6 _chem_comp.mon_nstd_flag . _chem_comp.name N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms APC3328 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 0D6 sing 1 n n N1 C2 0D6 sing 2 n n N1 C6 0D6 sing 3 n n C1 O1 0D6 doub 4 n n C2 C3 0D6 sing 5 n n C2 H21 0D6 sing 6 n n C2 H22 0D6 sing 7 n n C3 N4 0D6 sing 8 n n C3 H31 0D6 sing 9 n n C3 H32 0D6 sing 10 n n N4 C5 0D6 sing 11 n n N4 HN4 0D6 sing 12 n n C5 C6 0D6 sing 13 n n C5 H51 0D6 sing 14 n n C5 H52 0D6 sing 15 n n C6 H61 0D6 sing 16 n n C6 H62 0D6 sing 17 n n N CA 0D6 sing 18 n n N H 0D6 sing 19 n n CA C 0D6 sing 20 n n CA CB 0D6 sing 21 n n CA HA 0D6 sing 22 n n C O 0D6 doub 23 n n CB CG 0D6 sing 24 n n CB HB2 0D6 sing 25 n n CB HB3 0D6 sing 26 n n CG CD1 0D6 sing 27 n n CG CD2 0D6 sing 28 n n CG HG 0D6 sing 29 n n CD1 HD11 0D6 sing 30 n n CD1 HD12 0D6 sing 31 n n CD1 HD13 0D6 sing 32 n n CD2 HD21 0D6 sing 33 n n CD2 HD22 0D6 sing 34 n n CD2 HD23 0D6 sing 35 n n C11 C21 0D6 sing 36 n n C11 H11 0D6 sing 37 n n C11 H12 0D6 sing 38 n n C21 C31 0D6 sing 39 n n C21 H211 0D6 sing 40 n n C21 H221 0D6 sing 41 n n C31 N2 0D6 sing 42 n n C31 C4 0D6 sing 43 n n C31 H3 0D6 sing 44 n n N2 HN2 0D6 sing 45 n n C4 C51 0D6 sing 46 n n C4 H41 0D6 sing 47 n n C4 H42 0D6 sing 48 n n C51 C1' 0D6 sing 49 n n C51 H511 0D6 sing 50 n n C51 H521 0D6 sing 51 n n C1' C2' 0D6 doub 52 n y C1' C6' 0D6 sing 53 n y C2' C3' 0D6 sing 54 n y C2' H2' 0D6 sing 55 n n C3' C4' 0D6 doub 56 n y C3' H3' 0D6 sing 57 n n C4' C5' 0D6 sing 58 n y C4' H4' 0D6 sing 59 n n C5' C6' 0D6 doub 60 n y C5' H5' 0D6 sing 61 n n C6' H6' 0D6 sing 62 n n C12 C22 0D6 doub 63 n y C12 C61 0D6 sing 64 n y C12 H1 0D6 sing 65 n n C22 C32 0D6 sing 66 n y C22 H2 0D6 sing 67 n n C32 C41 0D6 doub 68 n y C32 H33 0D6 sing 69 n n C41 S1 0D6 sing 70 n n C41 C52 0D6 sing 71 n y S1 O11 0D6 doub 72 n n S1 O2 0D6 doub 73 n n C52 C61 0D6 doub 74 n y C52 H5 0D6 sing 75 n n C61 H6 0D6 sing 76 n n C1 N 0D6 sing 77 n n C N2 0D6 sing 78 n n C11 S1 0D6 sing 79 n n # _atom_sites.entry_id 1MEM _atom_sites.fract_transf_matrix[1][1] 0.024498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0D6 A 1 280 280 0D6 BZP . C 3 HOH A 1 285 1 HOH HOH . C 3 HOH A 2 286 2 HOH HOH . C 3 HOH A 3 287 3 HOH HOH . C 3 HOH A 4 288 4 HOH HOH . C 3 HOH A 5 289 5 HOH HOH . C 3 HOH A 6 290 6 HOH HOH . C 3 HOH A 7 291 7 HOH HOH . C 3 HOH A 8 292 8 HOH HOH . C 3 HOH A 9 293 9 HOH HOH . C 3 HOH A 10 294 10 HOH HOH . C 3 HOH A 11 295 11 HOH HOH . C 3 HOH A 12 296 12 HOH HOH . C 3 HOH A 13 297 13 HOH HOH . C 3 HOH A 14 298 14 HOH HOH . C 3 HOH A 15 299 15 HOH HOH . C 3 HOH A 16 300 16 HOH HOH . C 3 HOH A 17 301 17 HOH HOH . C 3 HOH A 18 302 18 HOH HOH . C 3 HOH A 19 303 19 HOH HOH . C 3 HOH A 20 304 20 HOH HOH . C 3 HOH A 21 305 21 HOH HOH . C 3 HOH A 22 306 22 HOH HOH . C 3 HOH A 23 307 23 HOH HOH . C 3 HOH A 24 308 24 HOH HOH . C 3 HOH A 25 309 25 HOH HOH . C 3 HOH A 26 310 26 HOH HOH . C 3 HOH A 27 311 27 HOH HOH . C 3 HOH A 28 312 28 HOH HOH . C 3 HOH A 29 313 29 HOH HOH . C 3 HOH A 30 314 30 HOH HOH . C 3 HOH A 31 315 31 HOH HOH . C 3 HOH A 32 316 32 HOH HOH . C 3 HOH A 33 317 33 HOH HOH . C 3 HOH A 34 318 34 HOH HOH . C 3 HOH A 35 319 35 HOH HOH . C 3 HOH A 36 320 36 HOH HOH . C 3 HOH A 37 321 37 HOH HOH . C 3 HOH A 38 322 38 HOH HOH . C 3 HOH A 39 323 39 HOH HOH . C 3 HOH A 40 324 40 HOH HOH . C 3 HOH A 41 325 41 HOH HOH . C 3 HOH A 42 326 42 HOH HOH . C 3 HOH A 43 327 43 HOH HOH . C 3 HOH A 44 328 44 HOH HOH . C 3 HOH A 45 329 45 HOH HOH . C 3 HOH A 46 330 46 HOH HOH . C 3 HOH A 47 331 47 HOH HOH . C 3 HOH A 48 332 48 HOH HOH . C 3 HOH A 49 333 49 HOH HOH . C 3 HOH A 50 334 50 HOH HOH . C 3 HOH A 51 335 51 HOH HOH . C 3 HOH A 52 336 52 HOH HOH . C 3 HOH A 53 337 53 HOH HOH . C 3 HOH A 54 338 54 HOH HOH . C 3 HOH A 55 339 55 HOH HOH . C 3 HOH A 56 340 56 HOH HOH . C 3 HOH A 57 341 57 HOH HOH . C 3 HOH A 58 342 58 HOH HOH . C 3 HOH A 59 343 59 HOH HOH . C 3 HOH A 60 344 60 HOH HOH . C 3 HOH A 61 345 61 HOH HOH . C 3 HOH A 62 346 62 HOH HOH . C 3 HOH A 63 347 63 HOH HOH . C 3 HOH A 64 348 64 HOH HOH . C 3 HOH A 65 349 65 HOH HOH . C 3 HOH A 66 350 66 HOH HOH . C 3 HOH A 67 351 67 HOH HOH . C 3 HOH A 68 352 68 HOH HOH . C 3 HOH A 69 353 69 HOH HOH . C 3 HOH A 70 354 70 HOH HOH . C 3 HOH A 71 355 71 HOH HOH . C 3 HOH A 72 356 72 HOH HOH . C 3 HOH A 73 357 73 HOH HOH . C 3 HOH A 74 358 74 HOH HOH . C 3 HOH A 75 359 75 HOH HOH . C 3 HOH A 76 360 76 HOH HOH . C 3 HOH A 77 361 77 HOH HOH . C 3 HOH A 78 362 78 HOH HOH . C 3 HOH A 79 363 79 HOH HOH . C 3 HOH A 80 364 80 HOH HOH . C 3 HOH A 81 365 81 HOH HOH . C 3 HOH A 82 366 82 HOH HOH . C 3 HOH A 83 367 83 HOH HOH . C 3 HOH A 84 368 84 HOH HOH . C 3 HOH A 85 369 85 HOH HOH . C 3 HOH A 86 370 86 HOH HOH . C 3 HOH A 87 371 87 HOH HOH . C 3 HOH A 88 372 88 HOH HOH . C 3 HOH A 89 373 89 HOH HOH . C 3 HOH A 90 374 90 HOH HOH . C 3 HOH A 91 375 91 HOH HOH . C 3 HOH A 92 376 92 HOH HOH . C 3 HOH A 93 377 93 HOH HOH . C 3 HOH A 94 378 94 HOH HOH . C 3 HOH A 95 379 95 HOH HOH . C 3 HOH A 96 380 96 HOH HOH . C 3 HOH A 97 381 97 HOH HOH . C 3 HOH A 98 382 98 HOH HOH . C 3 HOH A 99 383 99 HOH HOH . C 3 HOH A 100 384 100 HOH HOH . C 3 HOH A 101 385 101 HOH HOH . C 3 HOH A 102 386 102 HOH HOH . C 3 HOH A 103 387 103 HOH HOH . C 3 HOH A 104 388 104 HOH HOH . C 3 HOH A 105 389 105 HOH HOH . C 3 HOH A 106 390 106 HOH HOH . C 3 HOH A 107 391 107 HOH HOH . C 3 HOH A 108 392 108 HOH HOH . C 3 HOH A 109 393 109 HOH HOH . C 3 HOH A 110 394 110 HOH HOH . C 3 HOH A 111 395 111 HOH HOH . C 3 HOH A 112 396 112 HOH HOH . C 3 HOH A 113 397 113 HOH HOH . C 3 HOH A 114 398 114 HOH HOH . C 3 HOH A 115 399 115 HOH HOH . C 3 HOH A 116 400 116 HOH HOH . C 3 HOH A 117 401 117 HOH HOH . C 3 HOH A 118 402 118 HOH HOH . C 3 HOH A 119 403 119 HOH HOH . C 3 HOH A 120 404 120 HOH HOH . C 3 HOH A 121 405 121 HOH HOH . C 3 HOH A 122 406 122 HOH HOH . C 3 HOH A 123 407 123 HOH HOH . C 3 HOH A 124 408 124 HOH HOH . C 3 HOH A 125 409 125 HOH HOH . C 3 HOH A 126 410 126 HOH HOH . C 3 HOH A 127 411 127 HOH HOH . C 3 HOH A 128 412 128 HOH HOH . C 3 HOH A 129 413 129 HOH HOH . C 3 HOH A 130 414 130 HOH HOH . C 3 HOH A 131 415 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 0D6 . . . B 2 23.684 1.627 5.333 1 26.74 ? N1 0D6 280 A 1 HETATM 2 C C1 0D6 . . . B 2 22.467 2.154 5.176 1 25.3 ? C1 0D6 280 A 1 HETATM 3 O O1 0D6 . . . B 2 22.315 3.094 4.395 1 26.22 ? O1 0D6 280 A 1 HETATM 4 C C2 0D6 . . . B 2 24.889 2.186 4.636 1 28.02 ? C2 0D6 280 A 1 HETATM 5 C C3 0D6 . . . B 2 26.104 2.19 5.488 1 30.2 ? C3 0D6 280 A 1 HETATM 6 N N4 0D6 . . . B 2 26.345 0.849 6.018 1 31.72 ? N4 0D6 280 A 1 HETATM 7 C C5 0D6 . . . B 2 25.237 0.357 6.833 1 30.16 ? C5 0D6 280 A 1 HETATM 8 C C6 0D6 . . . B 2 23.942 0.354 6.06 1 27.67 ? C6 0D6 280 A 1 HETATM 9 N N 0D6 . . . B 2 21.408 1.597 5.763 1 23.06 ? N 0D6 280 A 1 HETATM 10 C CA 0D6 . . . B 2 20.085 2.182 5.59 1 22.58 ? CA 0D6 280 A 1 HETATM 11 C C 0D6 . . . B 2 20.104 3.574 6.163 1 21.7 ? C 0D6 280 A 1 HETATM 12 O O 0D6 . . . B 2 20.603 3.777 7.267 1 22 ? O 0D6 280 A 1 HETATM 13 C CB 0D6 . . . B 2 19.02 1.366 6.308 1 23.25 ? CB 0D6 280 A 1 HETATM 14 C CG 0D6 . . . B 2 18.34 0.174 5.637 1 24.88 ? CG 0D6 280 A 1 HETATM 15 C CD1 0D6 . . . B 2 18.88 -0.171 4.26 1 23.03 ? CD1 0D6 280 A 1 HETATM 16 C CD2 0D6 . . . B 2 18.417 -0.985 6.585 1 25.24 ? CD2 0D6 280 A 1 HETATM 17 C C11 0D6 . . . B 2 17.437 6.567 4.612 1 20.91 ? C11 0D6 280 A 1 HETATM 18 C C21 0D6 . . . B 2 18.165 6.409 5.974 1 21.12 ? C21 0D6 280 A 1 HETATM 19 C C31 0D6 . . . B 2 19.62 5.922 5.809 1 20.98 ? C31 0D6 280 A 1 HETATM 20 N N2 0D6 . . . B 2 19.676 4.544 5.368 1 20.95 ? N2 0D6 280 A 1 HETATM 21 C C4 0D6 . . . B 2 20.46 6.805 4.883 1 22.81 ? C4 0D6 280 A 1 HETATM 22 C C51 0D6 . . . B 2 21.948 6.483 4.961 1 25.28 ? C51 0D6 280 A 1 HETATM 23 C C1' 0D6 . . . B 2 22.765 7.285 3.979 1 29.95 ? C1' 0D6 280 A 1 HETATM 24 C C2' 0D6 . . . B 2 23.248 6.684 2.801 1 32.36 ? C2' 0D6 280 A 1 HETATM 25 C C3' 0D6 . . . B 2 23.922 7.464 1.847 1 32.68 ? C3' 0D6 280 A 1 HETATM 26 C C4' 0D6 . . . B 2 24.117 8.837 2.071 1 33.14 ? C4' 0D6 280 A 1 HETATM 27 C C5' 0D6 . . . B 2 23.65 9.436 3.237 1 31.61 ? C5' 0D6 280 A 1 HETATM 28 C C6' 0D6 . . . B 2 22.981 8.666 4.189 1 31.58 ? C6' 0D6 280 A 1 HETATM 29 C C12 0D6 . . . B 2 15.866 8.793 -0.03 1 31.73 ? C12 0D6 280 A 1 HETATM 30 C C22 0D6 . . . B 2 16.272 9.914 0.695 1 32.06 ? C22 0D6 280 A 1 HETATM 31 C C32 0D6 . . . B 2 16.79 9.775 1.994 1 28.96 ? C32 0D6 280 A 1 HETATM 32 C C41 0D6 . . . B 2 16.931 8.502 2.593 1 27.06 ? C41 0D6 280 A 1 HETATM 33 S S1 0D6 . . . B 2 17.093 8.339 4.349 1 20.11 ? S1 0D6 280 A 1 HETATM 34 O O11 0D6 . . . B 2 15.807 8.974 4.966 1 22.28 ? O11 0D6 280 A 1 HETATM 35 O O2 0D6 . . . B 2 18.323 9.217 4.677 1 19.52 ? O2 0D6 280 A 1 HETATM 36 C C52 0D6 . . . B 2 16.51 7.379 1.819 1 30.02 ? C52 0D6 280 A 1 HETATM 37 C C61 0D6 . . . B 2 15.983 7.53 0.527 1 31.51 ? C61 0D6 280 A 1 HETATM 38 H H 0D6 . . . B 2 21.543 1.182 6.634 1 30 ? H 0D6 280 A 1 HETATM 39 H HN2 0D6 . . . B 2 19.608 4.395 4.394 1 30 ? HN2 0D6 280 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #