data_1MEN # _model_server_result.job_id OfIhQYanRfBR9IdArgZzTw _model_server_result.datetime_utc '2024-11-28 04:57:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1men # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":225}' # _entry.id 1MEN # _exptl.entry_id 1MEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCINAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MEN _cell.length_a 147.825 _cell.length_b 147.825 _cell.length_c 188.036 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C7 H13 N2 O8 P -2' _chem_comp.formula_weight 284.16 _chem_comp.id GAR _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCINAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 GAR sing 83 n n C1 C2 GAR sing 84 n n C1 C5 GAR sing 85 n n C1 H1 GAR sing 86 n n O6 HO6 GAR sing 87 n n C2 O8 GAR sing 88 n n C2 C3 GAR sing 89 n n C2 H2 GAR sing 90 n n O8 HO8 GAR sing 91 n n C3 O4 GAR sing 92 n n C3 N19 GAR sing 93 n n C3 H3 GAR sing 94 n n O4 C5 GAR sing 95 n n C5 C10 GAR sing 96 n n C5 H5 GAR sing 97 n n C10 O12 GAR sing 98 n n C10 H101 GAR sing 99 n n C10 H102 GAR sing 100 n n O12 P15 GAR sing 101 n n N19 C21 GAR sing 102 n n N19 H19 GAR sing 103 n n C21 O22 GAR doub 104 n n C21 C23 GAR sing 105 n n C23 N24 GAR sing 106 n n C23 H231 GAR sing 107 n n C23 H232 GAR sing 108 n n N24 H241 GAR sing 109 n n N24 H242 GAR sing 110 n n P15 O16 GAR doub 111 n n P15 O17 GAR sing 112 n n P15 O18 GAR sing 113 n n # _atom_sites.entry_id 1MEN _atom_sites.fract_transf_matrix[1][1] 0.006765 _atom_sites.fract_transf_matrix[1][2] 0.003906 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GAR A 1 223 223 GAR GAR . E 2 GAR B 1 224 223 GAR GAR . F 2 GAR C 1 225 223 GAR GAR . G 3 HOH A 1 224 8 HOH HOH . G 3 HOH A 2 225 9 HOH HOH . G 3 HOH A 3 226 14 HOH HOH . G 3 HOH A 4 227 16 HOH HOH . G 3 HOH A 5 228 17 HOH HOH . G 3 HOH A 6 229 20 HOH HOH . G 3 HOH A 7 230 22 HOH HOH . G 3 HOH A 8 231 23 HOH HOH . G 3 HOH A 9 232 25 HOH HOH . G 3 HOH A 10 233 30 HOH HOH . G 3 HOH A 11 234 32 HOH HOH . G 3 HOH A 12 235 33 HOH HOH . G 3 HOH A 13 236 35 HOH HOH . G 3 HOH A 14 237 36 HOH HOH . G 3 HOH A 15 238 38 HOH HOH . G 3 HOH A 16 239 43 HOH HOH . G 3 HOH A 17 240 45 HOH HOH . G 3 HOH A 18 241 47 HOH HOH . G 3 HOH A 19 242 49 HOH HOH . G 3 HOH A 20 243 50 HOH HOH . G 3 HOH A 21 244 51 HOH HOH . G 3 HOH A 22 245 53 HOH HOH . G 3 HOH A 23 246 56 HOH HOH . G 3 HOH A 24 247 63 HOH HOH . G 3 HOH A 25 248 71 HOH HOH . G 3 HOH A 26 249 78 HOH HOH . G 3 HOH A 27 250 83 HOH HOH . G 3 HOH A 28 251 97 HOH HOH . G 3 HOH A 29 252 98 HOH HOH . G 3 HOH A 30 253 99 HOH HOH . G 3 HOH A 31 254 102 HOH HOH . G 3 HOH A 32 255 104 HOH HOH . G 3 HOH A 33 256 108 HOH HOH . G 3 HOH A 34 257 109 HOH HOH . G 3 HOH A 35 258 113 HOH HOH . G 3 HOH A 36 259 116 HOH HOH . G 3 HOH A 37 260 118 HOH HOH . G 3 HOH A 38 261 121 HOH HOH . G 3 HOH A 39 262 122 HOH HOH . G 3 HOH A 40 263 127 HOH HOH . G 3 HOH A 41 264 128 HOH HOH . H 3 HOH B 1 225 1 HOH HOH . H 3 HOH B 2 226 3 HOH HOH . H 3 HOH B 3 227 5 HOH HOH . H 3 HOH B 4 228 7 HOH HOH . H 3 HOH B 5 229 10 HOH HOH . H 3 HOH B 6 230 11 HOH HOH . H 3 HOH B 7 231 15 HOH HOH . H 3 HOH B 8 232 18 HOH HOH . H 3 HOH B 9 233 28 HOH HOH . H 3 HOH B 10 234 31 HOH HOH . H 3 HOH B 11 235 34 HOH HOH . H 3 HOH B 12 236 37 HOH HOH . H 3 HOH B 13 237 39 HOH HOH . H 3 HOH B 14 238 40 HOH HOH . H 3 HOH B 15 239 41 HOH HOH . H 3 HOH B 16 240 42 HOH HOH . H 3 HOH B 17 241 52 HOH HOH . H 3 HOH B 18 242 57 HOH HOH . H 3 HOH B 19 243 59 HOH HOH . H 3 HOH B 20 244 61 HOH HOH . H 3 HOH B 21 245 62 HOH HOH . H 3 HOH B 22 246 64 HOH HOH . H 3 HOH B 23 247 67 HOH HOH . H 3 HOH B 24 248 69 HOH HOH . H 3 HOH B 25 249 70 HOH HOH . H 3 HOH B 26 250 79 HOH HOH . H 3 HOH B 27 251 80 HOH HOH . H 3 HOH B 28 252 82 HOH HOH . H 3 HOH B 29 253 84 HOH HOH . H 3 HOH B 30 254 85 HOH HOH . H 3 HOH B 31 255 87 HOH HOH . H 3 HOH B 32 256 89 HOH HOH . H 3 HOH B 33 257 90 HOH HOH . H 3 HOH B 34 258 91 HOH HOH . H 3 HOH B 35 259 92 HOH HOH . H 3 HOH B 36 260 94 HOH HOH . H 3 HOH B 37 261 100 HOH HOH . H 3 HOH B 38 262 103 HOH HOH . H 3 HOH B 39 263 105 HOH HOH . H 3 HOH B 40 264 107 HOH HOH . H 3 HOH B 41 265 110 HOH HOH . H 3 HOH B 42 266 111 HOH HOH . H 3 HOH B 43 267 114 HOH HOH . H 3 HOH B 44 268 119 HOH HOH . H 3 HOH B 45 269 120 HOH HOH . H 3 HOH B 46 270 123 HOH HOH . H 3 HOH B 47 271 124 HOH HOH . H 3 HOH B 48 272 125 HOH HOH . H 3 HOH B 49 273 126 HOH HOH . I 3 HOH C 1 226 2 HOH HOH . I 3 HOH C 2 227 4 HOH HOH . I 3 HOH C 3 228 6 HOH HOH . I 3 HOH C 4 229 12 HOH HOH . I 3 HOH C 5 230 13 HOH HOH . I 3 HOH C 6 231 19 HOH HOH . I 3 HOH C 7 232 21 HOH HOH . I 3 HOH C 8 233 24 HOH HOH . I 3 HOH C 9 234 26 HOH HOH . I 3 HOH C 10 235 27 HOH HOH . I 3 HOH C 11 236 29 HOH HOH . I 3 HOH C 12 237 44 HOH HOH . I 3 HOH C 13 238 46 HOH HOH . I 3 HOH C 14 239 48 HOH HOH . I 3 HOH C 15 240 54 HOH HOH . I 3 HOH C 16 241 55 HOH HOH . I 3 HOH C 17 242 58 HOH HOH . I 3 HOH C 18 243 60 HOH HOH . I 3 HOH C 19 244 65 HOH HOH . I 3 HOH C 20 245 66 HOH HOH . I 3 HOH C 21 246 68 HOH HOH . I 3 HOH C 22 247 72 HOH HOH . I 3 HOH C 23 248 73 HOH HOH . I 3 HOH C 24 249 74 HOH HOH . I 3 HOH C 25 250 75 HOH HOH . I 3 HOH C 26 251 76 HOH HOH . I 3 HOH C 27 252 77 HOH HOH . I 3 HOH C 28 253 81 HOH HOH . I 3 HOH C 29 254 86 HOH HOH . I 3 HOH C 30 255 88 HOH HOH . I 3 HOH C 31 256 93 HOH HOH . I 3 HOH C 32 257 95 HOH HOH . I 3 HOH C 33 258 96 HOH HOH . I 3 HOH C 34 259 101 HOH HOH . I 3 HOH C 35 260 106 HOH HOH . I 3 HOH C 36 261 112 HOH HOH . I 3 HOH C 37 262 115 HOH HOH . I 3 HOH C 38 263 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAR . . . F 2 1.376 49.504 310.897 1 43.03 ? C1 GAR 225 C 1 HETATM 2 O O6 GAR . . . F 2 1.627 50.427 311.968 1 40.57 ? O6 GAR 225 C 1 HETATM 3 C C2 GAR . . . F 2 2.611 49.187 310.015 1 43.43 ? C2 GAR 225 C 1 HETATM 4 O O8 GAR . . . F 2 3.523 50.281 309.995 1 44.79 ? O8 GAR 225 C 1 HETATM 5 C C3 GAR . . . F 2 3.219 48.049 310.737 1 45.33 ? C3 GAR 225 C 1 HETATM 6 O O4 GAR . . . F 2 2.123 47.292 311.255 1 44.04 ? O4 GAR 225 C 1 HETATM 7 C C5 GAR . . . F 2 0.993 48.174 311.482 1 44.04 ? C5 GAR 225 C 1 HETATM 8 C C10 GAR . . . F 2 -0.352 47.655 310.886 1 42.37 ? C10 GAR 225 C 1 HETATM 9 O O12 GAR . . . F 2 -1.277 48.775 310.778 1 41.59 ? O12 GAR 225 C 1 HETATM 10 N N19 GAR . . . F 2 4.017 47.155 309.928 1 47.68 ? N19 GAR 225 C 1 HETATM 11 C C21 GAR . . . F 2 4.972 46.342 310.363 1 49.67 ? C21 GAR 225 C 1 HETATM 12 O O22 GAR . . . F 2 5.261 46.21 311.571 1 48.99 ? O22 GAR 225 C 1 HETATM 13 C C23 GAR . . . F 2 5.764 45.609 309.294 1 50.57 ? C23 GAR 225 C 1 HETATM 14 N N24 GAR . . . F 2 6.004 44.152 309.411 1 55.71 ? N24 GAR 225 C 1 HETATM 15 P P15 GAR . . . F 2 -2.714 48.717 310.205 1 39.12 ? P15 GAR 225 C 1 HETATM 16 O O16 GAR . . . F 2 -2.484 49.558 308.896 1 39.36 ? O16 GAR 225 C 1 HETATM 17 O O17 GAR . . . F 2 -3.719 49.449 311.208 1 39.05 ? O17 GAR 225 C 1 HETATM 18 O O18 GAR . . . F 2 -3.147 47.376 309.956 1 40.44 ? O18 GAR 225 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #