data_1MER
#
_model_server_result.job_id            0jl51kuICP4eCSc1HrFEAA 
_model_server_result.datetime_utc      '2025-07-23 07:24:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mer 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":450}' 
#
_entry.id    1MER 
#
_exptl.entry_id    1MER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              536.664 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-1,3-BIS([(3-AMINO)PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)-2H-1,3-DIAZEPINONE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1MER 
_cell.length_a            62.8 
_cell.length_b            62.8 
_cell.length_c            83.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C33 H36 N4 O3' 
_chem_comp.formula_weight    536.664 
_chem_comp.id                DMQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-1,3-BIS([(3-AMINO)PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)-2H-1,3-DIAZEPINONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DMP450(INHIBITOR OF DUPONT MERCK)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 DMQ doub 83 n n 
C1 N2 DMQ sing 84 n n 
C1 N7 DMQ sing 85 n n 
N2 C2 DMQ sing 86 n n 
N2 C3 DMQ sing 87 n n 
C2 C20 DMQ sing 88 n n 
C2 H21A DMQ sing 89 n n 
C2 H22A DMQ sing 90 n n 
C3 C4 DMQ sing 91 n n 
C3 C31 DMQ sing 92 n n 
C3 H3 DMQ sing 93 n n 
C4 O4 DMQ sing 94 n n 
C4 C5 DMQ sing 95 n n 
C4 H4 DMQ sing 96 n n 
O4 HO4 DMQ sing 97 n n 
C5 O5 DMQ sing 98 n n 
C5 C6 DMQ sing 99 n n 
C5 H5 DMQ sing 100 n n 
O5 HO5 DMQ sing 101 n n 
C6 N7 DMQ sing 102 n n 
C6 C61 DMQ sing 103 n n 
C6 H6 DMQ sing 104 n n 
C7 N7 DMQ sing 105 n n 
C7 C70 DMQ sing 106 n n 
C7 H71A DMQ sing 107 n n 
C7 H72 DMQ sing 108 n n 
C20 C21 DMQ doub 109 n y 
C20 C29 DMQ sing 110 n y 
C21 C22 DMQ sing 111 n y 
C21 H21 DMQ sing 112 n n 
C22 C23 DMQ doub 113 n y 
C22 H22 DMQ sing 114 n n 
C23 C28 DMQ sing 115 n y 
C23 H23 DMQ sing 116 n n 
C28 N29 DMQ sing 117 n n 
C28 C29 DMQ doub 118 n y 
N29 HN21 DMQ sing 119 n n 
N29 HN22 DMQ sing 120 n n 
C29 H29 DMQ sing 121 n n 
C31 C32 DMQ sing 122 n n 
C31 H311 DMQ sing 123 n n 
C31 H312 DMQ sing 124 n n 
C32 C33 DMQ doub 125 n y 
C32 C37 DMQ sing 126 n y 
C33 C34 DMQ sing 127 n y 
C33 H33 DMQ sing 128 n n 
C34 C35 DMQ doub 129 n y 
C34 H34 DMQ sing 130 n n 
C35 C36 DMQ sing 131 n y 
C35 H35 DMQ sing 132 n n 
C36 C37 DMQ doub 133 n y 
C36 H36 DMQ sing 134 n n 
C37 H37 DMQ sing 135 n n 
C61 C62 DMQ sing 136 n n 
C61 H611 DMQ sing 137 n n 
C61 H612 DMQ sing 138 n n 
C62 C63 DMQ doub 139 n y 
C62 C67 DMQ sing 140 n y 
C63 C64 DMQ sing 141 n y 
C63 H63 DMQ sing 142 n n 
C64 C65 DMQ doub 143 n y 
C64 H64 DMQ sing 144 n n 
C65 C66 DMQ sing 145 n y 
C65 H65 DMQ sing 146 n n 
C66 C67 DMQ doub 147 n y 
C66 H66 DMQ sing 148 n n 
C67 H67 DMQ sing 149 n n 
C70 C71 DMQ doub 150 n y 
C70 C79 DMQ sing 151 n y 
C71 C72 DMQ sing 152 n y 
C71 H71 DMQ sing 153 n n 
C72 N79 DMQ sing 154 n n 
C72 C77 DMQ doub 155 n y 
N79 HN71 DMQ sing 156 n n 
N79 HN72 DMQ sing 157 n n 
C77 C78 DMQ sing 158 n y 
C77 H77 DMQ sing 159 n n 
C78 C79 DMQ doub 160 n y 
C78 H78 DMQ sing 161 n n 
C79 H79 DMQ sing 162 n n 
#
_atom_sites.entry_id                     1MER 
_atom_sites.fract_transf_matrix[1][1]    0.015924 
_atom_sites.fract_transf_matrix[1][2]    0.009193 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011976 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           DMQ 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      450 
_pdbx_nonpoly_scheme.auth_seq_num     450 
_pdbx_nonpoly_scheme.pdb_mon_id       DMQ 
_pdbx_nonpoly_scheme.auth_mon_id      DMQ 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DMQ . . . C 2 -8.871 15.514 27.906 1 16.37 ? C1 DMQ 450 A 1 
HETATM 2 O O1 DMQ . . . C 2 -8.183 14.504 27.937 1 15.37 ? O1 DMQ 450 A 1 
HETATM 3 N N2 DMQ . . . C 2 -8.707 16.34 26.843 1 15.79 ? N2 DMQ 450 A 1 
HETATM 4 C C2 DMQ . . . C 2 -8.054 15.792 25.645 1 16.49 ? C2 DMQ 450 A 1 
HETATM 5 C C3 DMQ . . . C 2 -8.897 17.811 26.885 1 15.75 ? C3 DMQ 450 A 1 
HETATM 6 C C4 DMQ . . . C 2 -10.289 18.339 27.132 1 15.09 ? C4 DMQ 450 A 1 
HETATM 7 O O4 DMQ . . . C 2 -10.202 19.708 26.819 1 21.71 ? O4 DMQ 450 A 1 
HETATM 8 C C5 DMQ . . . C 2 -10.714 18.104 28.571 1 13.28 ? C5 DMQ 450 A 1 
HETATM 9 O O5 DMQ . . . C 2 -11.943 18.729 28.856 1 13.99 ? O5 DMQ 450 A 1 
HETATM 10 C C6 DMQ . . . C 2 -10.94 16.633 28.847 1 14.68 ? C6 DMQ 450 A 1 
HETATM 11 C C7 DMQ . . . C 2 -9.615 14.945 30.156 1 12.49 ? C7 DMQ 450 A 1 
HETATM 12 N N7 DMQ . . . C 2 -9.746 15.75 28.932 1 12.87 ? N7 DMQ 450 A 1 
HETATM 13 C C20 DMQ . . . C 2 -8.677 16.113 24.313 1 17.09 ? C20 DMQ 450 A 1 
HETATM 14 C C21 DMQ . . . C 2 -10.074 15.993 24.106 1 19.33 ? C21 DMQ 450 A 1 
HETATM 15 C C22 DMQ . . . C 2 -10.639 16.317 22.86 1 12.66 ? C22 DMQ 450 A 1 
HETATM 16 C C23 DMQ . . . C 2 -9.797 16.756 21.822 1 19.8 ? C23 DMQ 450 A 1 
HETATM 17 C C28 DMQ . . . C 2 -8.409 16.869 22.033 1 18.56 ? C28 DMQ 450 A 1 
HETATM 18 N N29 DMQ . . . C 2 -7.58 17.364 20.991 1 24.56 ? N29 DMQ 450 A 1 
HETATM 19 C C29 DMQ . . . C 2 -7.839 16.548 23.275 1 14.74 ? C29 DMQ 450 A 1 
HETATM 20 C C31 DMQ . . . C 2 -7.79 18.443 27.746 1 13.59 ? C31 DMQ 450 A 1 
HETATM 21 C C32 DMQ . . . C 2 -6.429 18.274 27.118 1 19.1 ? C32 DMQ 450 A 1 
HETATM 22 C C33 DMQ . . . C 2 -5.509 17.356 27.673 1 15.56 ? C33 DMQ 450 A 1 
HETATM 23 C C34 DMQ . . . C 2 -4.254 17.165 27.057 1 15.46 ? C34 DMQ 450 A 1 
HETATM 24 C C35 DMQ . . . C 2 -3.924 17.894 25.891 1 18.53 ? C35 DMQ 450 A 1 
HETATM 25 C C36 DMQ . . . C 2 -4.848 18.818 25.333 1 19.9 ? C36 DMQ 450 A 1 
HETATM 26 C C37 DMQ . . . C 2 -6.104 19.013 25.948 1 17.97 ? C37 DMQ 450 A 1 
HETATM 27 C C61 DMQ . . . C 2 -12.035 15.95 27.99 1 16.29 ? C61 DMQ 450 A 1 
HETATM 28 C C62 DMQ . . . C 2 -12.63 14.749 28.693 1 23.21 ? C62 DMQ 450 A 1 
HETATM 29 C C63 DMQ . . . C 2 -13.571 14.957 29.728 1 25.68 ? C63 DMQ 450 A 1 
HETATM 30 C C64 DMQ . . . C 2 -14.068 13.86 30.463 1 28.99 ? C64 DMQ 450 A 1 
HETATM 31 C C65 DMQ . . . C 2 -13.619 12.551 30.156 1 29.27 ? C65 DMQ 450 A 1 
HETATM 32 C C66 DMQ . . . C 2 -12.688 12.341 29.115 1 25.43 ? C66 DMQ 450 A 1 
HETATM 33 C C67 DMQ . . . C 2 -12.196 13.442 28.379 1 23.92 ? C67 DMQ 450 A 1 
HETATM 34 C C70 DMQ . . . C 2 -9.615 15.656 31.486 1 14.82 ? C70 DMQ 450 A 1 
HETATM 35 C C71 DMQ . . . C 2 -10.438 15.153 32.513 1 15.21 ? C71 DMQ 450 A 1 
HETATM 36 C C72 DMQ . . . C 2 -10.45 15.815 33.756 1 18.02 ? C72 DMQ 450 A 1 
HETATM 37 N N79 DMQ . . . C 2 -11.313 15.356 34.793 1 24.8 ? N79 DMQ 450 A 1 
HETATM 38 C C77 DMQ . . . C 2 -9.638 16.948 33.986 1 17.02 ? C77 DMQ 450 A 1 
HETATM 39 C C78 DMQ . . . C 2 -8.801 17.448 32.968 1 9.77 ? C78 DMQ 450 A 1 
HETATM 40 C C79 DMQ . . . C 2 -8.8 16.801 31.716 1 14.02 ? C79 DMQ 450 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#