data_1MEW # _model_server_result.job_id XLOvUmjbcrGW5yafr9HIYw _model_server_result.datetime_utc '2024-11-24 11:15:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 1MEW # _exptl.entry_id 1MEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.213 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "XANTHOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MEW _cell.length_a 153.827 _cell.length_b 153.827 _cell.length_c 153.827 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 153.827 153.827 0 3 'crystal symmetry operation' 15_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 153.827 0 4 'crystal symmetry operation' 16_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 153.827 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 459 A CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A O GLY 20 A GLY 20 15_565 B K K . A K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A OG SER 22 A SER 22 15_565 B K K . A K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 A N SER 22 A SER 22 15_565 B K K . A K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.452 ? metalc ? metalc4 A OD1 ASP 264 A ASP 264 1_555 B K K . A K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc5 A OD2 ASP 264 A ASP 264 1_555 B K K . A K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc6 A O PHE 266 A PHE 266 1_555 B K K . A K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc7 A O ASN 460 A ASN 460 15_565 B K K . A K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? # _chem_comp.formula 'C10 H14 N4 O9 P 1' _chem_comp.formula_weight 365.213 _chem_comp.id XMP _chem_comp.mon_nstd_flag . _chem_comp.name "XANTHOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P XMP sing 451 n n P O2P XMP sing 452 n n P O5' XMP sing 453 n n P O3P XMP doub 454 n n O1P HOP1 XMP sing 455 n n O2P HOP2 XMP sing 456 n n O5' C5' XMP sing 457 n n C5' C4' XMP sing 458 n n C5' "H5'2" XMP sing 459 n n C5' "H5'1" XMP sing 460 n n C4' O4' XMP sing 461 n n C4' C3' XMP sing 462 n n C4' H4' XMP sing 463 n n O4' C1' XMP sing 464 n n C1' N9 XMP sing 465 n n C1' C2' XMP sing 466 n n C1' H1' XMP sing 467 n n N9 C4 XMP sing 468 n y N9 C8 XMP sing 469 n y C4 N3 XMP sing 470 n n C4 C5 XMP doub 471 n y N3 C2 XMP sing 472 n n N3 H3 XMP sing 473 n n N1 C2 XMP sing 474 n n N1 C6 XMP sing 475 n n N1 H1 XMP sing 476 n n C2 O2 XMP doub 477 n n C6 O6 XMP doub 478 n n C6 C5 XMP sing 479 n n C5 N7 XMP sing 480 n y N7 C8 XMP doub 481 n y N7 H7 XMP sing 482 n n C8 H8 XMP sing 483 n n C2' O2' XMP sing 484 n n C2' C3' XMP sing 485 n n C2' H2' XMP sing 486 n n O2' H2O1 XMP sing 487 n n C3' O3' XMP sing 488 n n C3' H3' XMP sing 489 n n O3' H3O1 XMP sing 490 n n # _atom_sites.entry_id 1MEW _atom_sites.fract_transf_matrix[1][1] 0.006501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 900 900 K K1 . C 3 XMP A 1 602 602 XMP XMP . D 4 NAD A 1 987 987 NAD NAD . E 5 HOH A 1 988 1 HOH HOH . E 5 HOH A 2 989 2 HOH HOH . E 5 HOH A 3 990 3 HOH HOH . E 5 HOH A 4 991 4 HOH HOH . E 5 HOH A 5 992 5 HOH HOH . E 5 HOH A 6 993 6 HOH HOH . E 5 HOH A 7 994 7 HOH HOH . E 5 HOH A 8 995 8 HOH HOH . E 5 HOH A 9 996 9 HOH HOH . E 5 HOH A 10 997 10 HOH HOH . E 5 HOH A 11 998 11 HOH HOH . E 5 HOH A 12 999 12 HOH HOH . E 5 HOH A 13 1000 13 HOH HOH . E 5 HOH A 14 1001 14 HOH HOH . E 5 HOH A 15 1002 15 HOH HOH . E 5 HOH A 16 1003 16 HOH HOH . E 5 HOH A 17 1004 17 HOH HOH . E 5 HOH A 18 1005 18 HOH HOH . E 5 HOH A 19 1006 19 HOH HOH . E 5 HOH A 20 1007 20 HOH HOH . E 5 HOH A 21 1008 21 HOH HOH . E 5 HOH A 22 1009 22 HOH HOH . E 5 HOH A 23 1010 23 HOH HOH . E 5 HOH A 24 1011 24 HOH HOH . E 5 HOH A 25 1012 25 HOH HOH . E 5 HOH A 26 1013 26 HOH HOH . E 5 HOH A 27 1014 27 HOH HOH . E 5 HOH A 28 1015 28 HOH HOH . E 5 HOH A 29 1016 29 HOH HOH . E 5 HOH A 30 1017 30 HOH HOH . E 5 HOH A 31 1018 31 HOH HOH . E 5 HOH A 32 1019 32 HOH HOH . E 5 HOH A 33 1020 33 HOH HOH . E 5 HOH A 34 1021 34 HOH HOH . E 5 HOH A 35 1022 35 HOH HOH . E 5 HOH A 36 1023 36 HOH HOH . E 5 HOH A 37 1024 37 HOH HOH . E 5 HOH A 38 1025 38 HOH HOH . E 5 HOH A 39 1026 39 HOH HOH . E 5 HOH A 40 1027 40 HOH HOH . E 5 HOH A 41 1028 41 HOH HOH . E 5 HOH A 42 1029 42 HOH HOH . E 5 HOH A 43 1030 43 HOH HOH . E 5 HOH A 44 1031 44 HOH HOH . E 5 HOH A 45 1032 45 HOH HOH . E 5 HOH A 46 1033 46 HOH HOH . E 5 HOH A 47 1034 47 HOH HOH . E 5 HOH A 48 1035 48 HOH HOH . E 5 HOH A 49 1036 49 HOH HOH . E 5 HOH A 50 1037 50 HOH HOH . E 5 HOH A 51 1038 51 HOH HOH . E 5 HOH A 52 1039 52 HOH HOH . E 5 HOH A 53 1040 53 HOH HOH . E 5 HOH A 54 1041 54 HOH HOH . E 5 HOH A 55 1042 55 HOH HOH . E 5 HOH A 56 1043 56 HOH HOH . E 5 HOH A 57 1044 57 HOH HOH . E 5 HOH A 58 1045 58 HOH HOH . E 5 HOH A 59 1046 59 HOH HOH . E 5 HOH A 60 1047 60 HOH HOH . E 5 HOH A 61 1048 61 HOH HOH . E 5 HOH A 62 1049 62 HOH HOH . E 5 HOH A 63 1050 63 HOH HOH . E 5 HOH A 64 1051 64 HOH HOH . E 5 HOH A 65 1052 65 HOH HOH . E 5 HOH A 66 1053 66 HOH HOH . E 5 HOH A 67 1054 67 HOH HOH . E 5 HOH A 68 1055 68 HOH HOH . E 5 HOH A 69 1056 69 HOH HOH . E 5 HOH A 70 1057 70 HOH HOH . E 5 HOH A 71 1058 71 HOH HOH . E 5 HOH A 72 1059 72 HOH HOH . E 5 HOH A 73 1060 73 HOH HOH . E 5 HOH A 74 1061 74 HOH HOH . E 5 HOH A 75 1062 75 HOH HOH . E 5 HOH A 76 1063 76 HOH HOH . E 5 HOH A 77 1064 77 HOH HOH . E 5 HOH A 78 1065 78 HOH HOH . E 5 HOH A 79 1066 79 HOH HOH . E 5 HOH A 80 1067 80 HOH HOH . E 5 HOH A 81 1068 81 HOH HOH . E 5 HOH A 82 1069 82 HOH HOH . E 5 HOH A 83 1070 83 HOH HOH . E 5 HOH A 84 1071 84 HOH HOH . E 5 HOH A 85 1072 85 HOH HOH . E 5 HOH A 86 1073 86 HOH HOH . E 5 HOH A 87 1074 87 HOH HOH . E 5 HOH A 88 1075 88 HOH HOH . E 5 HOH A 89 1076 89 HOH HOH . E 5 HOH A 90 1077 90 HOH HOH . E 5 HOH A 91 1078 91 HOH HOH . E 5 HOH A 92 1079 92 HOH HOH . E 5 HOH A 93 1080 93 HOH HOH . E 5 HOH A 94 1081 94 HOH HOH . E 5 HOH A 95 1082 95 HOH HOH . E 5 HOH A 96 1083 96 HOH HOH . E 5 HOH A 97 1084 97 HOH HOH . E 5 HOH A 98 1085 98 HOH HOH . E 5 HOH A 99 1086 99 HOH HOH . E 5 HOH A 100 1087 100 HOH HOH . E 5 HOH A 101 1088 101 HOH HOH . E 5 HOH A 102 1089 102 HOH HOH . E 5 HOH A 103 1090 103 HOH HOH . E 5 HOH A 104 1091 104 HOH HOH . E 5 HOH A 105 1092 105 HOH HOH . E 5 HOH A 106 1093 106 HOH HOH . E 5 HOH A 107 1094 107 HOH HOH . E 5 HOH A 108 1095 108 HOH HOH . E 5 HOH A 109 1096 109 HOH HOH . E 5 HOH A 110 1097 110 HOH HOH . E 5 HOH A 111 1098 111 HOH HOH . E 5 HOH A 112 1099 112 HOH HOH . E 5 HOH A 113 1100 113 HOH HOH . E 5 HOH A 114 1101 114 HOH HOH . E 5 HOH A 115 1102 115 HOH HOH . E 5 HOH A 116 1103 116 HOH HOH . E 5 HOH A 117 1104 117 HOH HOH . E 5 HOH A 118 1105 118 HOH HOH . E 5 HOH A 119 1106 119 HOH HOH . E 5 HOH A 120 1107 120 HOH HOH . E 5 HOH A 121 1108 121 HOH HOH . E 5 HOH A 122 1109 122 HOH HOH . E 5 HOH A 123 1110 123 HOH HOH . E 5 HOH A 124 1111 124 HOH HOH . E 5 HOH A 125 1112 125 HOH HOH . E 5 HOH A 126 1113 126 HOH HOH . E 5 HOH A 127 1114 127 HOH HOH . E 5 HOH A 128 1115 128 HOH HOH . E 5 HOH A 129 1116 129 HOH HOH . E 5 HOH A 130 1117 130 HOH HOH . E 5 HOH A 131 1118 131 HOH HOH . E 5 HOH A 132 1119 132 HOH HOH . E 5 HOH A 133 1120 133 HOH HOH . E 5 HOH A 134 1121 134 HOH HOH . E 5 HOH A 135 1122 135 HOH HOH . E 5 HOH A 136 1123 136 HOH HOH . E 5 HOH A 137 1124 137 HOH HOH . E 5 HOH A 138 1125 138 HOH HOH . E 5 HOH A 139 1126 139 HOH HOH . E 5 HOH A 140 1127 140 HOH HOH . E 5 HOH A 141 1128 141 HOH HOH . E 5 HOH A 142 1129 142 HOH HOH . E 5 HOH A 143 1130 143 HOH HOH . E 5 HOH A 144 1131 144 HOH HOH . E 5 HOH A 145 1132 145 HOH HOH . E 5 HOH A 146 1133 146 HOH HOH . E 5 HOH A 147 1134 147 HOH HOH . E 5 HOH A 148 1135 148 HOH HOH . E 5 HOH A 149 1136 149 HOH HOH . E 5 HOH A 150 1137 150 HOH HOH . E 5 HOH A 151 1138 151 HOH HOH . E 5 HOH A 152 1139 152 HOH HOH . E 5 HOH A 153 1140 153 HOH HOH . E 5 HOH A 154 1141 154 HOH HOH . E 5 HOH A 155 1142 155 HOH HOH . E 5 HOH A 156 1143 156 HOH HOH . E 5 HOH A 157 1144 157 HOH HOH . E 5 HOH A 158 1145 158 HOH HOH . E 5 HOH A 159 1146 159 HOH HOH . E 5 HOH A 160 1147 160 HOH HOH . E 5 HOH A 161 1148 161 HOH HOH . E 5 HOH A 162 1149 162 HOH HOH . E 5 HOH A 163 1150 163 HOH HOH . E 5 HOH A 164 1151 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P XMP . . . C 3 67.402 54.842 14.904 1 30.34 ? P XMP 602 A 1 HETATM 2 O O1P XMP . . . C 3 67.002 54.789 13.486 1 30.72 ? O1P XMP 602 A 1 HETATM 3 O O2P XMP . . . C 3 68.19 53.69 15.379 1 30.78 ? O2P XMP 602 A 1 HETATM 4 O O5' XMP . . . C 3 66.075 54.823 15.699 1 29.65 ? O5' XMP 602 A 1 HETATM 5 O O3P XMP . . . C 3 67.954 56.14 15.323 1 30.68 ? O3P XMP 602 A 1 HETATM 6 C C5' XMP . . . C 3 65.078 53.767 15.814 1 29.12 ? C5' XMP 602 A 1 HETATM 7 C C4' XMP . . . C 3 63.985 54.002 16.886 1 29.15 ? C4' XMP 602 A 1 HETATM 8 O O4' XMP . . . C 3 63.144 55.124 16.601 1 29.44 ? O4' XMP 602 A 1 HETATM 9 C C1' XMP . . . C 3 61.803 55.041 17.06 1 29.86 ? C1' XMP 602 A 1 HETATM 10 N N9 XMP . . . C 3 60.863 55.346 15.925 1 30.85 ? N9 XMP 602 A 1 HETATM 11 C C4 XMP . . . C 3 60.396 56.585 15.533 1 31.77 ? C4 XMP 602 A 1 HETATM 12 N N3 XMP . . . C 3 60.681 57.809 16.083 1 32.09 ? N3 XMP 602 A 1 HETATM 13 N N1 XMP . . . C 3 59.202 58.646 14.358 1 32.72 ? N1 XMP 602 A 1 HETATM 14 C C2 XMP . . . C 3 60.053 58.836 15.454 1 33.14 ? C2 XMP 602 A 1 HETATM 15 O O2 XMP . . . C 3 60.229 59.983 15.858 1 33.63 ? O2 XMP 602 A 1 HETATM 16 C C6 XMP . . . C 3 58.897 57.407 13.781 1 32.3 ? C6 XMP 602 A 1 HETATM 17 O O6 XMP . . . C 3 58.148 57.308 12.825 1 33.3 ? O6 XMP 602 A 1 HETATM 18 C C5 XMP . . . C 3 59.556 56.336 14.439 1 32.02 ? C5 XMP 602 A 1 HETATM 19 N N7 XMP . . . C 3 59.498 55.005 14.154 1 31.42 ? N7 XMP 602 A 1 HETATM 20 C C8 XMP . . . C 3 60.263 54.494 15.036 1 31.18 ? C8 XMP 602 A 1 HETATM 21 C C2' XMP . . . C 3 61.788 53.653 17.733 1 29.1 ? C2' XMP 602 A 1 HETATM 22 O O2' XMP . . . C 3 61.947 53.88 19.132 1 29.07 ? O2' XMP 602 A 1 HETATM 23 C C3' XMP . . . C 3 62.943 52.927 17.024 1 28.77 ? C3' XMP 602 A 1 HETATM 24 O O3' XMP . . . C 3 63.388 51.798 17.768 1 28.12 ? O3' XMP 602 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #