data_1MEW # _model_server_result.job_id wJ2fYZM00lfxecn47h6i3w _model_server_result.datetime_utc '2024-11-01 06:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":987}' # _entry.id 1MEW # _exptl.entry_id 1MEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MEW _cell.length_a 153.827 _cell.length_b 153.827 _cell.length_c 153.827 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 153.827 153.827 0 3 'crystal symmetry operation' 15_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 153.827 0 4 'crystal symmetry operation' 16_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 153.827 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 459 A CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 B K K . A K 900 1_555 A O PHE 266 A PHE 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc2 B K K . A K 900 1_555 A OD1 ASP 264 A ASP 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc3 B K K . A K 900 1_555 A OD2 ASP 264 A ASP 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 B K K . A K 900 1_555 A OG SER 22 A SER 22 15_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 B K K . A K 900 1_555 A N SER 22 A SER 22 15_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.452 ? metalc ? metalc6 B K K . A K 900 1_555 A O ASN 460 A ASN 460 15_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc7 B K K . A K 900 1_555 A O GLY 20 A GLY 20 15_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MEW _atom_sites.fract_transf_matrix[1][1] 0.006501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 900 900 K K1 . C 3 XMP A 1 602 602 XMP XMP . D 4 NAD A 1 987 987 NAD NAD . E 5 HOH A 1 988 1 HOH HOH . E 5 HOH A 2 989 2 HOH HOH . E 5 HOH A 3 990 3 HOH HOH . E 5 HOH A 4 991 4 HOH HOH . E 5 HOH A 5 992 5 HOH HOH . E 5 HOH A 6 993 6 HOH HOH . E 5 HOH A 7 994 7 HOH HOH . E 5 HOH A 8 995 8 HOH HOH . E 5 HOH A 9 996 9 HOH HOH . E 5 HOH A 10 997 10 HOH HOH . E 5 HOH A 11 998 11 HOH HOH . E 5 HOH A 12 999 12 HOH HOH . E 5 HOH A 13 1000 13 HOH HOH . E 5 HOH A 14 1001 14 HOH HOH . E 5 HOH A 15 1002 15 HOH HOH . E 5 HOH A 16 1003 16 HOH HOH . E 5 HOH A 17 1004 17 HOH HOH . E 5 HOH A 18 1005 18 HOH HOH . E 5 HOH A 19 1006 19 HOH HOH . E 5 HOH A 20 1007 20 HOH HOH . E 5 HOH A 21 1008 21 HOH HOH . E 5 HOH A 22 1009 22 HOH HOH . E 5 HOH A 23 1010 23 HOH HOH . E 5 HOH A 24 1011 24 HOH HOH . E 5 HOH A 25 1012 25 HOH HOH . E 5 HOH A 26 1013 26 HOH HOH . E 5 HOH A 27 1014 27 HOH HOH . E 5 HOH A 28 1015 28 HOH HOH . E 5 HOH A 29 1016 29 HOH HOH . E 5 HOH A 30 1017 30 HOH HOH . E 5 HOH A 31 1018 31 HOH HOH . E 5 HOH A 32 1019 32 HOH HOH . E 5 HOH A 33 1020 33 HOH HOH . E 5 HOH A 34 1021 34 HOH HOH . E 5 HOH A 35 1022 35 HOH HOH . E 5 HOH A 36 1023 36 HOH HOH . E 5 HOH A 37 1024 37 HOH HOH . E 5 HOH A 38 1025 38 HOH HOH . E 5 HOH A 39 1026 39 HOH HOH . E 5 HOH A 40 1027 40 HOH HOH . E 5 HOH A 41 1028 41 HOH HOH . E 5 HOH A 42 1029 42 HOH HOH . E 5 HOH A 43 1030 43 HOH HOH . E 5 HOH A 44 1031 44 HOH HOH . E 5 HOH A 45 1032 45 HOH HOH . E 5 HOH A 46 1033 46 HOH HOH . E 5 HOH A 47 1034 47 HOH HOH . E 5 HOH A 48 1035 48 HOH HOH . E 5 HOH A 49 1036 49 HOH HOH . E 5 HOH A 50 1037 50 HOH HOH . E 5 HOH A 51 1038 51 HOH HOH . E 5 HOH A 52 1039 52 HOH HOH . E 5 HOH A 53 1040 53 HOH HOH . E 5 HOH A 54 1041 54 HOH HOH . E 5 HOH A 55 1042 55 HOH HOH . E 5 HOH A 56 1043 56 HOH HOH . E 5 HOH A 57 1044 57 HOH HOH . E 5 HOH A 58 1045 58 HOH HOH . E 5 HOH A 59 1046 59 HOH HOH . E 5 HOH A 60 1047 60 HOH HOH . E 5 HOH A 61 1048 61 HOH HOH . E 5 HOH A 62 1049 62 HOH HOH . E 5 HOH A 63 1050 63 HOH HOH . E 5 HOH A 64 1051 64 HOH HOH . E 5 HOH A 65 1052 65 HOH HOH . E 5 HOH A 66 1053 66 HOH HOH . E 5 HOH A 67 1054 67 HOH HOH . E 5 HOH A 68 1055 68 HOH HOH . E 5 HOH A 69 1056 69 HOH HOH . E 5 HOH A 70 1057 70 HOH HOH . E 5 HOH A 71 1058 71 HOH HOH . E 5 HOH A 72 1059 72 HOH HOH . E 5 HOH A 73 1060 73 HOH HOH . E 5 HOH A 74 1061 74 HOH HOH . E 5 HOH A 75 1062 75 HOH HOH . E 5 HOH A 76 1063 76 HOH HOH . E 5 HOH A 77 1064 77 HOH HOH . E 5 HOH A 78 1065 78 HOH HOH . E 5 HOH A 79 1066 79 HOH HOH . E 5 HOH A 80 1067 80 HOH HOH . E 5 HOH A 81 1068 81 HOH HOH . E 5 HOH A 82 1069 82 HOH HOH . E 5 HOH A 83 1070 83 HOH HOH . E 5 HOH A 84 1071 84 HOH HOH . E 5 HOH A 85 1072 85 HOH HOH . E 5 HOH A 86 1073 86 HOH HOH . E 5 HOH A 87 1074 87 HOH HOH . E 5 HOH A 88 1075 88 HOH HOH . E 5 HOH A 89 1076 89 HOH HOH . E 5 HOH A 90 1077 90 HOH HOH . E 5 HOH A 91 1078 91 HOH HOH . E 5 HOH A 92 1079 92 HOH HOH . E 5 HOH A 93 1080 93 HOH HOH . E 5 HOH A 94 1081 94 HOH HOH . E 5 HOH A 95 1082 95 HOH HOH . E 5 HOH A 96 1083 96 HOH HOH . E 5 HOH A 97 1084 97 HOH HOH . E 5 HOH A 98 1085 98 HOH HOH . E 5 HOH A 99 1086 99 HOH HOH . E 5 HOH A 100 1087 100 HOH HOH . E 5 HOH A 101 1088 101 HOH HOH . E 5 HOH A 102 1089 102 HOH HOH . E 5 HOH A 103 1090 103 HOH HOH . E 5 HOH A 104 1091 104 HOH HOH . E 5 HOH A 105 1092 105 HOH HOH . E 5 HOH A 106 1093 106 HOH HOH . E 5 HOH A 107 1094 107 HOH HOH . E 5 HOH A 108 1095 108 HOH HOH . E 5 HOH A 109 1096 109 HOH HOH . E 5 HOH A 110 1097 110 HOH HOH . E 5 HOH A 111 1098 111 HOH HOH . E 5 HOH A 112 1099 112 HOH HOH . E 5 HOH A 113 1100 113 HOH HOH . E 5 HOH A 114 1101 114 HOH HOH . E 5 HOH A 115 1102 115 HOH HOH . E 5 HOH A 116 1103 116 HOH HOH . E 5 HOH A 117 1104 117 HOH HOH . E 5 HOH A 118 1105 118 HOH HOH . E 5 HOH A 119 1106 119 HOH HOH . E 5 HOH A 120 1107 120 HOH HOH . E 5 HOH A 121 1108 121 HOH HOH . E 5 HOH A 122 1109 122 HOH HOH . E 5 HOH A 123 1110 123 HOH HOH . E 5 HOH A 124 1111 124 HOH HOH . E 5 HOH A 125 1112 125 HOH HOH . E 5 HOH A 126 1113 126 HOH HOH . E 5 HOH A 127 1114 127 HOH HOH . E 5 HOH A 128 1115 128 HOH HOH . E 5 HOH A 129 1116 129 HOH HOH . E 5 HOH A 130 1117 130 HOH HOH . E 5 HOH A 131 1118 131 HOH HOH . E 5 HOH A 132 1119 132 HOH HOH . E 5 HOH A 133 1120 133 HOH HOH . E 5 HOH A 134 1121 134 HOH HOH . E 5 HOH A 135 1122 135 HOH HOH . E 5 HOH A 136 1123 136 HOH HOH . E 5 HOH A 137 1124 137 HOH HOH . E 5 HOH A 138 1125 138 HOH HOH . E 5 HOH A 139 1126 139 HOH HOH . E 5 HOH A 140 1127 140 HOH HOH . E 5 HOH A 141 1128 141 HOH HOH . E 5 HOH A 142 1129 142 HOH HOH . E 5 HOH A 143 1130 143 HOH HOH . E 5 HOH A 144 1131 144 HOH HOH . E 5 HOH A 145 1132 145 HOH HOH . E 5 HOH A 146 1133 146 HOH HOH . E 5 HOH A 147 1134 147 HOH HOH . E 5 HOH A 148 1135 148 HOH HOH . E 5 HOH A 149 1136 149 HOH HOH . E 5 HOH A 150 1137 150 HOH HOH . E 5 HOH A 151 1138 151 HOH HOH . E 5 HOH A 152 1139 152 HOH HOH . E 5 HOH A 153 1140 153 HOH HOH . E 5 HOH A 154 1141 154 HOH HOH . E 5 HOH A 155 1142 155 HOH HOH . E 5 HOH A 156 1143 156 HOH HOH . E 5 HOH A 157 1144 157 HOH HOH . E 5 HOH A 158 1145 158 HOH HOH . E 5 HOH A 159 1146 159 HOH HOH . E 5 HOH A 160 1147 160 HOH HOH . E 5 HOH A 161 1148 161 HOH HOH . E 5 HOH A 162 1149 162 HOH HOH . E 5 HOH A 163 1150 163 HOH HOH . E 5 HOH A 164 1151 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 4 50.634 53.888 20.452 1 70.18 ? PA NAD 987 A 1 HETATM 2 O O1A NAD . . . D 4 49.686 52.811 20.084 1 70.1 ? O1A NAD 987 A 1 HETATM 3 O O2A NAD . . . D 4 51.622 53.619 21.519 1 70.18 ? O2A NAD 987 A 1 HETATM 4 O O5B NAD . . . D 4 49.807 55.222 20.825 1 70.73 ? O5B NAD 987 A 1 HETATM 5 C C5B NAD . . . D 4 48.836 55.19 21.879 1 71.96 ? C5B NAD 987 A 1 HETATM 6 C C4B NAD . . . D 4 48.158 56.575 22.018 1 72.4 ? C4B NAD 987 A 1 HETATM 7 O O4B NAD . . . D 4 47.053 56.406 22.993 1 72.62 ? O4B NAD 987 A 1 HETATM 8 C C3B NAD . . . D 4 47.458 56.986 20.719 1 72.81 ? C3B NAD 987 A 1 HETATM 9 O O3B NAD . . . D 4 48.185 56.491 19.587 1 73.24 ? O3B NAD 987 A 1 HETATM 10 C C2B NAD . . . D 4 46.117 56.309 20.794 1 72.87 ? C2B NAD 987 A 1 HETATM 11 O O2B NAD . . . D 4 46.258 54.925 20.444 1 72.72 ? O2B NAD 987 A 1 HETATM 12 C C1B NAD . . . D 4 45.766 56.439 22.272 1 72.67 ? C1B NAD 987 A 1 HETATM 13 N N9A NAD . . . D 4 44.784 55.412 22.731 1 72.51 ? N9A NAD 987 A 1 HETATM 14 C C8A NAD . . . D 4 43.46 55.583 22.865 1 72.46 ? C8A NAD 987 A 1 HETATM 15 N N7A NAD . . . D 4 42.908 54.431 23.274 1 72.16 ? N7A NAD 987 A 1 HETATM 16 C C5A NAD . . . D 4 43.88 53.538 23.399 1 72.08 ? C5A NAD 987 A 1 HETATM 17 C C6A NAD . . . D 4 43.92 52.2 23.781 1 72.01 ? C6A NAD 987 A 1 HETATM 18 N N6A NAD . . . D 4 42.803 51.558 24.105 1 72.25 ? N6A NAD 987 A 1 HETATM 19 N N1A NAD . . . D 4 45.108 51.553 23.81 1 71.86 ? N1A NAD 987 A 1 HETATM 20 C C2A NAD . . . D 4 46.241 52.179 23.476 1 71.78 ? C2A NAD 987 A 1 HETATM 21 N N3A NAD . . . D 4 46.228 53.462 23.105 1 71.9 ? N3A NAD 987 A 1 HETATM 22 C C4A NAD . . . D 4 45.069 54.157 23.059 1 72.2 ? C4A NAD 987 A 1 HETATM 23 O O3 NAD . . . D 4 51.412 54.316 19.101 1 69.74 ? O3 NAD 987 A 1 HETATM 24 P PN NAD . . . D 4 52.634 55.383 19.126 1 69.12 ? PN NAD 987 A 1 HETATM 25 O O1N NAD . . . D 4 53.103 55.572 20.519 1 68.69 ? O1N NAD 987 A 1 HETATM 26 O O2N NAD . . . D 4 52.25 56.578 18.341 1 69.23 ? O2N NAD 987 A 1 HETATM 27 O O5D NAD . . . D 4 53.807 54.613 18.343 1 69.13 ? O5D NAD 987 A 1 HETATM 28 C C5D NAD . . . D 4 53.538 53.954 17.101 1 68.98 ? C5D NAD 987 A 1 HETATM 29 C C4D NAD . . . D 4 54.844 53.577 16.381 1 68.78 ? C4D NAD 987 A 1 HETATM 30 O O4D NAD . . . D 4 55.536 54.846 16.049 1 68.83 ? O4D NAD 987 A 1 HETATM 31 C C3D NAD . . . D 4 55.787 52.849 17.333 1 68.59 ? C3D NAD 987 A 1 HETATM 32 O O3D NAD . . . D 4 56.629 51.948 16.611 1 68.69 ? O3D NAD 987 A 1 HETATM 33 C C2D NAD . . . D 4 56.615 53.936 17.951 1 68.5 ? C2D NAD 987 A 1 HETATM 34 O O2D NAD . . . D 4 57.896 53.435 18.333 1 68.13 ? O2D NAD 987 A 1 HETATM 35 C C1D NAD . . . D 4 56.784 54.933 16.818 1 68.7 ? C1D NAD 987 A 1 HETATM 36 N N1N NAD . . . D 4 57.133 56.318 17.254 1 69.08 ? N1N NAD 987 A 1 HETATM 37 C C2N NAD . . . D 4 58.217 56.537 18.152 1 69.28 ? C2N NAD 987 A 1 HETATM 38 C C3N NAD . . . D 4 58.549 57.847 18.538 1 69.57 ? C3N NAD 987 A 1 HETATM 39 C C7N NAD . . . D 4 59.715 58.103 19.514 1 69.91 ? C7N NAD 987 A 1 HETATM 40 O O7N NAD . . . D 4 60.134 59.245 19.712 1 70.2 ? O7N NAD 987 A 1 HETATM 41 N N7N NAD . . . D 4 60.22 57.016 20.103 1 69.78 ? N7N NAD 987 A 1 HETATM 42 C C4N NAD . . . D 4 57.806 58.929 18.03 1 69.34 ? C4N NAD 987 A 1 HETATM 43 C C5N NAD . . . D 4 56.734 58.723 17.144 1 69.28 ? C5N NAD 987 A 1 HETATM 44 C C6N NAD . . . D 4 56.393 57.421 16.753 1 69.1 ? C6N NAD 987 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #