data_1MEZ
#
_model_server_result.job_id            '_s32kEslqlK8cQb96YMC5A' 
_model_server_result.datetime_utc      '2024-10-19 22:34:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mez 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1455}' 
#
_entry.id    1MEZ 
#
_exptl.entry_id    1MEZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              463.293 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[9-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-9H-PURIN-6-YLAMINO]-SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MEZ 
_cell.length_a            70.63 
_cell.length_b            70.63 
_cell.length_c            196.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MEZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 141.26 141.26 98.355 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 43 A ASP 43 1_555 B MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc2 A O GLY 70 A GLY 70 1_555 B MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc3 D O2A GDP . A GDP 1452 1_555 B MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 D O2B GDP . A GDP 1452 1_555 B MG MG . A MG 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc5 B MG MG . A MG 1453 1_555 C O1 SO4 . A SO4 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc6 B MG MG . A MG 1453 1_555 E O65 2SA . A 2SA 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
#
_chem_comp.formula           'C14 H18 N5 O11 P' 
_chem_comp.formula_weight    463.293 
_chem_comp.id                2SA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[9-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-9H-PURIN-6-YLAMINO]-SUCCINIC ACID' 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     'ADENYLOSUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A 2SA sing 1 n n 
PA O2A 2SA sing 2 n n 
PA O3A 2SA doub 3 n n 
PA O5' 2SA sing 4 n n 
O1A HO1 2SA sing 5 n n 
O2A H2A 2SA sing 6 n n 
O5' C5' 2SA sing 7 n n 
C5' C4' 2SA sing 8 n n 
C5' HC51 2SA sing 9 n n 
C5' HC52 2SA sing 10 n n 
C4' O4' 2SA sing 11 n n 
C4' C3' 2SA sing 12 n n 
C4' HC4 2SA sing 13 n n 
O4' C1' 2SA sing 14 n n 
C1' N9 2SA sing 15 n n 
C1' C2' 2SA sing 16 n n 
C1' HC1 2SA sing 17 n n 
N9 C4 2SA sing 18 n y 
N9 C8 2SA sing 19 n y 
C4 N3 2SA doub 20 n y 
C4 C5 2SA sing 21 n y 
N3 C2 2SA sing 22 n y 
C2 N1 2SA doub 23 n y 
C2 HC2 2SA sing 24 n n 
N1 C6 2SA sing 25 n y 
C6 N6 2SA sing 26 n n 
C6 C5 2SA doub 27 n y 
N6 C61 2SA sing 28 n n 
N6 HN6 2SA sing 29 n n 
C61 C62 2SA sing 30 n n 
C61 C63 2SA sing 31 n n 
C61 H61 2SA sing 32 n n 
C62 O65 2SA doub 33 n n 
C62 O66 2SA sing 34 n n 
C63 C64 2SA sing 35 n n 
C63 H631 2SA sing 36 n n 
C63 H632 2SA sing 37 n n 
C64 O67 2SA sing 38 n n 
C64 O68 2SA doub 39 n n 
O66 H66 2SA sing 40 n n 
O67 H67 2SA sing 41 n n 
C5 N7 2SA sing 42 n y 
N7 C8 2SA doub 43 n y 
C8 HC8 2SA sing 44 n n 
C2' O2' 2SA sing 45 n n 
C2' C3' 2SA sing 46 n n 
C2' H2' 2SA sing 47 n n 
O2' HO2 2SA sing 48 n n 
C3' O3' 2SA sing 49 n n 
C3' HC3 2SA sing 50 n n 
O3' HO3 2SA sing 51 n n 
#
_atom_sites.entry_id                     1MEZ 
_atom_sites.fract_transf_matrix[1][1]    0.014158 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1453 453 MG MG . 
C 3 SO4 A 1 1454 454 SO4 SO4 . 
D 4 GDP A 1 1452 452 GDP GDP . 
E 5 2SA A 1 1455 455 2SA ADS . 
F 6 HOH A 1 501 501 HOH TIP . 
F 6 HOH A 2 502 502 HOH TIP . 
F 6 HOH A 3 503 503 HOH TIP . 
F 6 HOH A 4 504 504 HOH TIP . 
F 6 HOH A 5 505 505 HOH TIP . 
F 6 HOH A 6 506 506 HOH TIP . 
F 6 HOH A 7 507 507 HOH TIP . 
F 6 HOH A 8 508 508 HOH TIP . 
F 6 HOH A 9 509 509 HOH TIP . 
F 6 HOH A 10 510 510 HOH TIP . 
F 6 HOH A 11 511 511 HOH TIP . 
F 6 HOH A 12 512 512 HOH TIP . 
F 6 HOH A 13 513 513 HOH TIP . 
F 6 HOH A 14 514 514 HOH TIP . 
F 6 HOH A 15 515 515 HOH TIP . 
F 6 HOH A 16 516 516 HOH TIP . 
F 6 HOH A 17 517 517 HOH TIP . 
F 6 HOH A 18 518 518 HOH TIP . 
F 6 HOH A 19 519 519 HOH TIP . 
F 6 HOH A 20 520 520 HOH TIP . 
F 6 HOH A 21 521 521 HOH TIP . 
F 6 HOH A 22 522 522 HOH TIP . 
F 6 HOH A 23 523 523 HOH TIP . 
F 6 HOH A 24 524 524 HOH TIP . 
F 6 HOH A 25 525 525 HOH TIP . 
F 6 HOH A 26 526 526 HOH TIP . 
F 6 HOH A 27 527 527 HOH TIP . 
F 6 HOH A 28 528 528 HOH TIP . 
F 6 HOH A 29 529 529 HOH TIP . 
F 6 HOH A 30 530 530 HOH TIP . 
F 6 HOH A 31 531 531 HOH TIP . 
F 6 HOH A 32 532 532 HOH TIP . 
F 6 HOH A 33 533 533 HOH TIP . 
F 6 HOH A 34 534 534 HOH TIP . 
F 6 HOH A 35 535 535 HOH TIP . 
F 6 HOH A 36 536 536 HOH TIP . 
F 6 HOH A 37 537 537 HOH TIP . 
F 6 HOH A 38 538 538 HOH TIP . 
F 6 HOH A 39 539 539 HOH TIP . 
F 6 HOH A 40 540 540 HOH TIP . 
F 6 HOH A 41 541 541 HOH TIP . 
F 6 HOH A 42 542 542 HOH TIP . 
F 6 HOH A 43 543 543 HOH TIP . 
F 6 HOH A 44 544 544 HOH TIP . 
F 6 HOH A 45 545 545 HOH TIP . 
F 6 HOH A 46 546 546 HOH TIP . 
F 6 HOH A 47 547 547 HOH TIP . 
F 6 HOH A 48 548 548 HOH TIP . 
F 6 HOH A 49 549 549 HOH TIP . 
F 6 HOH A 50 550 550 HOH TIP . 
F 6 HOH A 51 551 551 HOH TIP . 
F 6 HOH A 52 552 552 HOH TIP . 
F 6 HOH A 53 553 553 HOH TIP . 
F 6 HOH A 54 554 554 HOH TIP . 
F 6 HOH A 55 555 555 HOH TIP . 
F 6 HOH A 56 556 556 HOH TIP . 
F 6 HOH A 57 557 557 HOH TIP . 
F 6 HOH A 58 558 558 HOH TIP . 
F 6 HOH A 59 559 559 HOH TIP . 
F 6 HOH A 60 560 560 HOH TIP . 
F 6 HOH A 61 561 561 HOH TIP . 
F 6 HOH A 62 562 562 HOH TIP . 
F 6 HOH A 63 563 563 HOH TIP . 
F 6 HOH A 64 564 564 HOH TIP . 
F 6 HOH A 65 565 565 HOH TIP . 
F 6 HOH A 66 566 566 HOH TIP . 
F 6 HOH A 67 567 567 HOH TIP . 
F 6 HOH A 68 568 568 HOH TIP . 
F 6 HOH A 69 569 569 HOH TIP . 
F 6 HOH A 70 570 570 HOH TIP . 
F 6 HOH A 71 571 571 HOH TIP . 
F 6 HOH A 72 572 572 HOH TIP . 
F 6 HOH A 73 573 573 HOH TIP . 
F 6 HOH A 74 574 574 HOH TIP . 
F 6 HOH A 75 575 575 HOH TIP . 
F 6 HOH A 76 576 576 HOH TIP . 
F 6 HOH A 77 577 577 HOH TIP . 
F 6 HOH A 78 578 578 HOH TIP . 
F 6 HOH A 79 579 579 HOH TIP . 
F 6 HOH A 80 580 580 HOH TIP . 
F 6 HOH A 81 581 581 HOH TIP . 
F 6 HOH A 82 582 582 HOH TIP . 
F 6 HOH A 83 583 583 HOH TIP . 
F 6 HOH A 84 584 584 HOH TIP . 
F 6 HOH A 85 585 585 HOH TIP . 
F 6 HOH A 86 586 586 HOH TIP . 
F 6 HOH A 87 587 587 HOH TIP . 
F 6 HOH A 88 588 588 HOH TIP . 
F 6 HOH A 89 589 589 HOH TIP . 
F 6 HOH A 90 590 590 HOH TIP . 
F 6 HOH A 91 591 591 HOH TIP . 
F 6 HOH A 92 592 592 HOH TIP . 
F 6 HOH A 93 593 593 HOH TIP . 
F 6 HOH A 94 594 594 HOH TIP . 
F 6 HOH A 95 595 595 HOH TIP . 
F 6 HOH A 96 596 596 HOH TIP . 
F 6 HOH A 97 597 597 HOH TIP . 
F 6 HOH A 98 598 598 HOH TIP . 
F 6 HOH A 99 599 599 HOH TIP . 
F 6 HOH A 100 600 600 HOH TIP . 
F 6 HOH A 101 601 601 HOH TIP . 
F 6 HOH A 102 602 602 HOH TIP . 
F 6 HOH A 103 603 603 HOH TIP . 
F 6 HOH A 104 604 604 HOH TIP . 
F 6 HOH A 105 605 605 HOH TIP . 
F 6 HOH A 106 606 606 HOH TIP . 
F 6 HOH A 107 607 607 HOH TIP . 
F 6 HOH A 108 608 608 HOH TIP . 
F 6 HOH A 109 609 609 HOH TIP . 
F 6 HOH A 110 610 610 HOH TIP . 
F 6 HOH A 111 611 611 HOH TIP . 
F 6 HOH A 112 612 612 HOH TIP . 
F 6 HOH A 113 613 613 HOH TIP . 
F 6 HOH A 114 614 614 HOH TIP . 
F 6 HOH A 115 615 615 HOH TIP . 
F 6 HOH A 116 616 616 HOH TIP . 
F 6 HOH A 117 617 617 HOH TIP . 
F 6 HOH A 118 618 618 HOH TIP . 
F 6 HOH A 119 619 619 HOH TIP . 
F 6 HOH A 120 620 620 HOH TIP . 
F 6 HOH A 121 621 621 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA 2SA . . . E 5 62.076 66.504 39.274 1 37.23 ? PA 2SA 1455 A 1 
HETATM 2 O O1A 2SA . . . E 5 60.62 66.067 39.295 1 42.29 ? O1A 2SA 1455 A 1 
HETATM 3 O O2A 2SA . . . E 5 62.304 67.78 40.058 1 38.79 ? O2A 2SA 1455 A 1 
HETATM 4 O O3A 2SA . . . E 5 62.999 65.369 39.668 1 39.72 ? O3A 2SA 1455 A 1 
HETATM 5 O O5' 2SA . . . E 5 62.417 66.888 37.723 1 37.27 ? O5' 2SA 1455 A 1 
HETATM 6 C C5' 2SA . . . E 5 63.671 67.51 37.365 1 35.6 ? C5' 2SA 1455 A 1 
HETATM 7 C C4' 2SA . . . E 5 64.273 66.802 36.179 1 34.49 ? C4' 2SA 1455 A 1 
HETATM 8 O O4' 2SA . . . E 5 64.6 65.435 36.549 1 35.67 ? O4' 2SA 1455 A 1 
HETATM 9 C C1' 2SA . . . E 5 64.11 64.558 35.562 1 35.01 ? C1' 2SA 1455 A 1 
HETATM 10 N N9 2SA . . . E 5 63.669 63.325 36.2 1 35.59 ? N9 2SA 1455 A 1 
HETATM 11 C C4 2SA . . . E 5 63.67 62.084 35.615 1 34.47 ? C4 2SA 1455 A 1 
HETATM 12 N N3 2SA . . . E 5 64.192 61.747 34.423 1 30.23 ? N3 2SA 1455 A 1 
HETATM 13 C C2 2SA . . . E 5 63.938 60.471 34.145 1 30.98 ? C2 2SA 1455 A 1 
HETATM 14 N N1 2SA . . . E 5 63.25 59.572 34.856 1 33.97 ? N1 2SA 1455 A 1 
HETATM 15 C C6 2SA . . . E 5 62.718 59.953 36.042 1 35.77 ? C6 2SA 1455 A 1 
HETATM 16 N N6 2SA . . . E 5 61.733 59.187 36.664 1 40.4 ? N6 2SA 1455 A 1 
HETATM 17 C C61 2SA . . . E 5 60.548 58.985 35.804 1 41.33 ? C61 2SA 1455 A 1 
HETATM 18 C C62 2SA . . . E 5 60.783 57.861 34.8 1 41.68 ? C62 2SA 1455 A 1 
HETATM 19 C C63 2SA . . . E 5 60.152 60.293 35.074 1 43.34 ? C63 2SA 1455 A 1 
HETATM 20 C C64 2SA . . . E 5 58.904 60.137 34.188 1 45.57 ? C64 2SA 1455 A 1 
HETATM 21 O O65 2SA . . . E 5 61.06 56.734 35.268 1 42.04 ? O65 2SA 1455 A 1 
HETATM 22 O O66 2SA . . . E 5 60.691 58.106 33.574 1 40.89 ? O66 2SA 1455 A 1 
HETATM 23 O O67 2SA . . . E 5 58.04 59.277 34.473 1 44.97 ? O67 2SA 1455 A 1 
HETATM 24 O O68 2SA . . . E 5 58.779 60.894 33.203 1 47.1 ? O68 2SA 1455 A 1 
HETATM 25 C C5 2SA . . . E 5 62.962 61.265 36.475 1 35.33 ? C5 2SA 1455 A 1 
HETATM 26 N N7 2SA . . . E 5 62.609 61.953 37.629 1 36.48 ? N7 2SA 1455 A 1 
HETATM 27 C C8 2SA . . . E 5 63.071 63.164 37.427 1 34.98 ? C8 2SA 1455 A 1 
HETATM 28 C C2' 2SA . . . E 5 62.868 65.263 35.027 1 35.82 ? C2' 2SA 1455 A 1 
HETATM 29 O O2' 2SA . . . E 5 62.418 64.714 33.809 1 38.47 ? O2' 2SA 1455 A 1 
HETATM 30 C C3' 2SA . . . E 5 63.335 66.708 34.981 1 35.62 ? C3' 2SA 1455 A 1 
HETATM 31 O O3' 2SA . . . E 5 63.976 67.076 33.765 1 35.66 ? O3' 2SA 1455 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#