data_1MF1
#
_model_server_result.job_id            jiXZnD22xCAHhq4yZBUnpw 
_model_server_result.datetime_utc      '2024-10-12 14:25:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mf1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":459}' 
#
_entry.id    1MF1 
#
_exptl.entry_id    1MF1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MF1 
_cell.length_a            70.24 
_cell.length_b            70.24 
_cell.length_c            199.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MF1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 140.48 140.48 99.57 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 19 n n 
P O2P AMP sing 20 n n 
P O3P AMP sing 21 n n 
P O5' AMP sing 22 n n 
O2P HOP2 AMP sing 23 n n 
O3P HOP3 AMP sing 24 n n 
O5' C5' AMP sing 25 n n 
C5' C4' AMP sing 26 n n 
C5' "H5'1" AMP sing 27 n n 
C5' "H5'2" AMP sing 28 n n 
C4' O4' AMP sing 29 n n 
C4' C3' AMP sing 30 n n 
C4' H4' AMP sing 31 n n 
O4' C1' AMP sing 32 n n 
C3' O3' AMP sing 33 n n 
C3' C2' AMP sing 34 n n 
C3' H3' AMP sing 35 n n 
O3' HO3' AMP sing 36 n n 
C2' O2' AMP sing 37 n n 
C2' C1' AMP sing 38 n n 
C2' H2' AMP sing 39 n n 
O2' HO2' AMP sing 40 n n 
C1' N9 AMP sing 41 n n 
C1' H1' AMP sing 42 n n 
N9 C8 AMP sing 43 n y 
N9 C4 AMP sing 44 n y 
C8 N7 AMP doub 45 n y 
C8 H8 AMP sing 46 n n 
N7 C5 AMP sing 47 n y 
C5 C6 AMP sing 48 n y 
C5 C4 AMP doub 49 n y 
C6 N6 AMP sing 50 n n 
C6 N1 AMP doub 51 n y 
N6 HN61 AMP sing 52 n n 
N6 HN62 AMP sing 53 n n 
N1 C2 AMP sing 54 n y 
C2 N3 AMP doub 55 n y 
C2 H2 AMP sing 56 n n 
N3 C4 AMP sing 57 n y 
#
_atom_sites.entry_id                     1MF1 
_atom_sites.fract_transf_matrix[1][1]    0.014237 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 458 455 ACT ACT . 
C 3 AMP A 1 459 337 AMP AMP . 
D 4 HOH A 1 501 501 HOH TIP . 
D 4 HOH A 2 502 502 HOH TIP . 
D 4 HOH A 3 503 503 HOH TIP . 
D 4 HOH A 4 504 504 HOH TIP . 
D 4 HOH A 5 505 505 HOH TIP . 
D 4 HOH A 6 506 506 HOH TIP . 
D 4 HOH A 7 507 507 HOH TIP . 
D 4 HOH A 8 508 508 HOH TIP . 
D 4 HOH A 9 509 509 HOH TIP . 
D 4 HOH A 10 510 510 HOH TIP . 
D 4 HOH A 11 511 511 HOH TIP . 
D 4 HOH A 12 512 512 HOH TIP . 
D 4 HOH A 13 513 513 HOH TIP . 
D 4 HOH A 14 514 514 HOH TIP . 
D 4 HOH A 15 515 515 HOH TIP . 
D 4 HOH A 16 516 516 HOH TIP . 
D 4 HOH A 17 517 517 HOH TIP . 
D 4 HOH A 18 518 518 HOH TIP . 
D 4 HOH A 19 519 519 HOH TIP . 
D 4 HOH A 20 520 520 HOH TIP . 
D 4 HOH A 21 521 521 HOH TIP . 
D 4 HOH A 22 522 522 HOH TIP . 
D 4 HOH A 23 523 523 HOH TIP . 
D 4 HOH A 24 524 524 HOH TIP . 
D 4 HOH A 25 525 525 HOH TIP . 
D 4 HOH A 26 526 526 HOH TIP . 
D 4 HOH A 27 527 527 HOH TIP . 
D 4 HOH A 28 528 528 HOH TIP . 
D 4 HOH A 29 529 529 HOH TIP . 
D 4 HOH A 30 530 530 HOH TIP . 
D 4 HOH A 31 531 531 HOH TIP . 
D 4 HOH A 32 532 532 HOH TIP . 
D 4 HOH A 33 533 533 HOH TIP . 
D 4 HOH A 34 534 534 HOH TIP . 
D 4 HOH A 35 535 535 HOH TIP . 
D 4 HOH A 36 536 536 HOH TIP . 
D 4 HOH A 37 537 537 HOH TIP . 
D 4 HOH A 38 538 538 HOH TIP . 
D 4 HOH A 39 539 539 HOH TIP . 
D 4 HOH A 40 540 540 HOH TIP . 
D 4 HOH A 41 541 541 HOH TIP . 
D 4 HOH A 42 542 542 HOH TIP . 
D 4 HOH A 43 543 543 HOH TIP . 
D 4 HOH A 44 544 544 HOH TIP . 
D 4 HOH A 45 545 545 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 3 60.54 66.937 40.023 1 49.08 ? P AMP 459 A 1 
HETATM 2 O O1P AMP . . . C 3 59.028 66.82 40.124 1 53.16 ? O1P AMP 459 A 1 
HETATM 3 O O2P AMP . . . C 3 61.068 68.163 40.756 1 49.51 ? O2P AMP 459 A 1 
HETATM 4 O O3P AMP . . . C 3 61.243 65.646 40.418 1 49.27 ? O3P AMP 459 A 1 
HETATM 5 O O5' AMP . . . C 3 60.872 67.155 38.44 1 48.1 ? O5' AMP 459 A 1 
HETATM 6 C C5' AMP . . . C 3 62.08 67.822 38.011 1 48.8 ? C5' AMP 459 A 1 
HETATM 7 C C4' AMP . . . C 3 62.624 67.163 36.767 1 44.39 ? C4' AMP 459 A 1 
HETATM 8 O O4' AMP . . . C 3 63.008 65.788 37.04 1 45.49 ? O4' AMP 459 A 1 
HETATM 9 C C3' AMP . . . C 3 61.656 67.11 35.595 1 46.26 ? C3' AMP 459 A 1 
HETATM 10 O O3' AMP . . . C 3 62.314 67.502 34.386 1 49.2 ? O3' AMP 459 A 1 
HETATM 11 C C2' AMP . . . C 3 61.167 65.666 35.634 1 41.47 ? C2' AMP 459 A 1 
HETATM 12 O O2' AMP . . . C 3 60.685 65.178 34.406 1 40.93 ? O2' AMP 459 A 1 
HETATM 13 C C1' AMP . . . C 3 62.431 64.938 36.073 1 41.61 ? C1' AMP 459 A 1 
HETATM 14 N N9 AMP . . . C 3 62.172 63.648 36.71 1 40.31 ? N9 AMP 459 A 1 
HETATM 15 C C8 AMP . . . C 3 61.766 63.411 38 1 41.37 ? C8 AMP 459 A 1 
HETATM 16 N N7 AMP . . . C 3 61.671 62.137 38.3 1 43.83 ? N7 AMP 459 A 1 
HETATM 17 C C5 AMP . . . C 3 62.023 61.49 37.122 1 42.89 ? C5 AMP 459 A 1 
HETATM 18 C C6 AMP . . . C 3 62.138 60.125 36.784 1 41.79 ? C6 AMP 459 A 1 
HETATM 19 N N6 AMP . . . C 3 61.894 59.12 37.63 1 45.9 ? N6 AMP 459 A 1 
HETATM 20 N N1 AMP . . . C 3 62.52 59.823 35.527 1 41.15 ? N1 AMP 459 A 1 
HETATM 21 C C2 AMP . . . C 3 62.768 60.822 34.676 1 45.58 ? C2 AMP 459 A 1 
HETATM 22 N N3 AMP . . . C 3 62.7 62.139 34.873 1 44.29 ? N3 AMP 459 A 1 
HETATM 23 C C4 AMP . . . C 3 62.321 62.41 36.132 1 42.09 ? C4 AMP 459 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#