data_1MFP # _model_server_result.job_id jsXJJ922hHyiCYrC3Ya6eg _model_server_result.datetime_utc '2024-12-26 14:42:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1MFP # _exptl.entry_id 1MFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (E)-N-METHYL-N-(1-METHYL-1H-INDOL-3-YLMETHYL)-3-(7-OXO-5,6,7,8-TETRAHYDRO-[1,8]NAPHTHYRIDIN-3-YL)-ACRYLAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MFP _cell.length_a 79.6 _cell.length_b 79.6 _cell.length_c 325.48 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 39.8 68.935622 271.233333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C22 H22 N4 O2' _chem_comp.formula_weight 374.436 _chem_comp.id IDN _chem_comp.mon_nstd_flag . _chem_comp.name (E)-N-METHYL-N-(1-METHYL-1H-INDOL-3-YLMETHYL)-3-(7-OXO-5,6,7,8-TETRAHYDRO-[1,8]NAPHTHYRIDIN-3-YL)-ACRYLAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'INDOLE NAPHTHYRIDINONE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 IDN sing 152 n y C01 N06 IDN doub 153 n y C01 N19 IDN sing 154 n n C02 C03 IDN doub 155 n y C02 C25 IDN sing 156 n n C03 C04 IDN sing 157 n y C03 H03 IDN sing 158 n n C04 C05 IDN doub 159 n y C04 C07 IDN sing 160 n n C05 N06 IDN sing 161 n y C05 H05 IDN sing 162 n n C07 C08 IDN doub 163 e n C07 H07 IDN sing 164 n n C08 C09 IDN sing 165 n n C08 H08 IDN sing 166 n n C09 O10 IDN doub 167 n n C09 N11 IDN sing 168 n n N11 C12 IDN sing 169 n n N11 C13 IDN sing 170 n n C12 H121 IDN sing 171 n n C12 H122 IDN sing 172 n n C12 H123 IDN sing 173 n n C13 C14 IDN sing 174 n n C13 H131 IDN sing 175 n n C13 H132 IDN sing 176 n n C14 C15 IDN doub 177 n y C14 C18 IDN sing 178 n y C15 N16 IDN sing 179 n y C15 H15 IDN sing 180 n n N16 C17 IDN sing 181 n y N16 C20 IDN sing 182 n n C17 C18 IDN sing 183 n y C17 C23 IDN doub 184 n y C18 C24 IDN doub 185 n y N19 C27 IDN sing 186 n n N19 H19 IDN sing 187 n n C20 H201 IDN sing 188 n n C20 H202 IDN sing 189 n n C20 H203 IDN sing 190 n n C21 C22 IDN doub 191 n y C21 C24 IDN sing 192 n y C21 H21 IDN sing 193 n n C22 C23 IDN sing 194 n y C22 H22 IDN sing 195 n n C23 H23 IDN sing 196 n n C24 H24 IDN sing 197 n n C25 C26 IDN sing 198 n n C25 H251 IDN sing 199 n n C25 H252 IDN sing 200 n n C26 C27 IDN sing 201 n n C26 H261 IDN sing 202 n n C26 H262 IDN sing 203 n n C27 O28 IDN doub 204 n n # _atom_sites.entry_id 1MFP _atom_sites.fract_transf_matrix[1][1] 0.012563 _atom_sites.fract_transf_matrix[1][2] 0.007253 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 301 NAD NAD . D 3 IDN A 1 302 302 IDN 113 . E 4 SO4 B 1 1303 1303 SO4 SO4 . F 2 NAD B 1 1301 1301 NAD NAD . G 3 IDN B 1 1302 1302 IDN 113 . H 5 HOH A 1 303 5 HOH HOH . H 5 HOH A 2 304 6 HOH HOH . H 5 HOH A 3 305 8 HOH HOH . H 5 HOH A 4 306 12 HOH HOH . H 5 HOH A 5 307 16 HOH HOH . H 5 HOH A 6 308 17 HOH HOH . H 5 HOH A 7 309 19 HOH HOH . H 5 HOH A 8 310 24 HOH HOH . H 5 HOH A 9 311 32 HOH HOH . H 5 HOH A 10 312 34 HOH HOH . H 5 HOH A 11 313 36 HOH HOH . H 5 HOH A 12 314 37 HOH HOH . H 5 HOH A 13 315 38 HOH HOH . H 5 HOH A 14 316 40 HOH HOH . H 5 HOH A 15 317 42 HOH HOH . H 5 HOH A 16 318 47 HOH HOH . H 5 HOH A 17 319 48 HOH HOH . H 5 HOH A 18 320 49 HOH HOH . H 5 HOH A 19 321 52 HOH HOH . H 5 HOH A 20 322 53 HOH HOH . H 5 HOH A 21 323 54 HOH HOH . H 5 HOH A 22 324 57 HOH HOH . H 5 HOH A 23 325 58 HOH HOH . H 5 HOH A 24 326 64 HOH HOH . H 5 HOH A 25 327 67 HOH HOH . H 5 HOH A 26 328 69 HOH HOH . H 5 HOH A 27 329 70 HOH HOH . H 5 HOH A 28 330 71 HOH HOH . H 5 HOH A 29 331 72 HOH HOH . H 5 HOH A 30 332 73 HOH HOH . H 5 HOH A 31 333 75 HOH HOH . H 5 HOH A 32 334 80 HOH HOH . H 5 HOH A 33 335 82 HOH HOH . H 5 HOH A 34 336 85 HOH HOH . H 5 HOH A 35 337 86 HOH HOH . H 5 HOH A 36 338 87 HOH HOH . H 5 HOH A 37 339 89 HOH HOH . H 5 HOH A 38 340 91 HOH HOH . H 5 HOH A 39 341 93 HOH HOH . H 5 HOH A 40 342 95 HOH HOH . H 5 HOH A 41 343 98 HOH HOH . H 5 HOH A 42 344 100 HOH HOH . H 5 HOH A 43 345 102 HOH HOH . H 5 HOH A 44 346 104 HOH HOH . H 5 HOH A 45 347 106 HOH HOH . H 5 HOH A 46 348 109 HOH HOH . H 5 HOH A 47 349 116 HOH HOH . H 5 HOH A 48 350 117 HOH HOH . H 5 HOH A 49 351 118 HOH HOH . H 5 HOH A 50 352 121 HOH HOH . H 5 HOH A 51 353 122 HOH HOH . H 5 HOH A 52 354 124 HOH HOH . H 5 HOH A 53 355 125 HOH HOH . H 5 HOH A 54 356 126 HOH HOH . H 5 HOH A 55 357 129 HOH HOH . H 5 HOH A 56 358 132 HOH HOH . H 5 HOH A 57 359 133 HOH HOH . H 5 HOH A 58 360 137 HOH HOH . H 5 HOH A 59 361 140 HOH HOH . H 5 HOH A 60 362 142 HOH HOH . H 5 HOH A 61 363 144 HOH HOH . H 5 HOH A 62 364 145 HOH HOH . H 5 HOH A 63 365 146 HOH HOH . H 5 HOH A 64 366 147 HOH HOH . H 5 HOH A 65 367 149 HOH HOH . H 5 HOH A 66 368 150 HOH HOH . H 5 HOH A 67 369 151 HOH HOH . H 5 HOH A 68 370 152 HOH HOH . H 5 HOH A 69 371 153 HOH HOH . H 5 HOH A 70 372 154 HOH HOH . H 5 HOH A 71 373 155 HOH HOH . H 5 HOH A 72 374 156 HOH HOH . H 5 HOH A 73 375 157 HOH HOH . H 5 HOH A 74 376 158 HOH HOH . H 5 HOH A 75 377 159 HOH HOH . H 5 HOH A 76 378 160 HOH HOH . H 5 HOH A 77 379 169 HOH HOH . H 5 HOH A 78 380 178 HOH HOH . H 5 HOH A 79 381 179 HOH HOH . H 5 HOH A 80 382 182 HOH HOH . H 5 HOH A 81 383 183 HOH HOH . H 5 HOH A 82 384 185 HOH HOH . H 5 HOH A 83 385 186 HOH HOH . H 5 HOH A 84 386 190 HOH HOH . H 5 HOH A 85 387 194 HOH HOH . H 5 HOH A 86 388 195 HOH HOH . I 5 HOH B 1 1 1 HOH HOH . I 5 HOH B 2 2 2 HOH HOH . I 5 HOH B 3 3 3 HOH HOH . I 5 HOH B 4 4 4 HOH HOH . I 5 HOH B 5 7 7 HOH HOH . I 5 HOH B 6 9 9 HOH HOH . I 5 HOH B 7 10 10 HOH HOH . I 5 HOH B 8 11 11 HOH HOH . I 5 HOH B 9 13 13 HOH HOH . I 5 HOH B 10 14 14 HOH HOH . I 5 HOH B 11 15 15 HOH HOH . I 5 HOH B 12 18 18 HOH HOH . I 5 HOH B 13 20 20 HOH HOH . I 5 HOH B 14 21 21 HOH HOH . I 5 HOH B 15 22 22 HOH HOH . I 5 HOH B 16 23 23 HOH HOH . I 5 HOH B 17 25 25 HOH HOH . I 5 HOH B 18 26 26 HOH HOH . I 5 HOH B 19 27 27 HOH HOH . I 5 HOH B 20 28 28 HOH HOH . I 5 HOH B 21 29 29 HOH HOH . I 5 HOH B 22 30 30 HOH HOH . I 5 HOH B 23 31 31 HOH HOH . I 5 HOH B 24 33 33 HOH HOH . I 5 HOH B 25 35 35 HOH HOH . I 5 HOH B 26 39 39 HOH HOH . I 5 HOH B 27 41 41 HOH HOH . I 5 HOH B 28 43 43 HOH HOH . I 5 HOH B 29 44 44 HOH HOH . I 5 HOH B 30 45 45 HOH HOH . I 5 HOH B 31 46 46 HOH HOH . I 5 HOH B 32 50 50 HOH HOH . I 5 HOH B 33 51 51 HOH HOH . I 5 HOH B 34 55 55 HOH HOH . I 5 HOH B 35 56 56 HOH HOH . I 5 HOH B 36 59 59 HOH HOH . I 5 HOH B 37 60 60 HOH HOH . I 5 HOH B 38 61 61 HOH HOH . I 5 HOH B 39 62 62 HOH HOH . I 5 HOH B 40 63 63 HOH HOH . I 5 HOH B 41 65 65 HOH HOH . I 5 HOH B 42 66 66 HOH HOH . I 5 HOH B 43 68 68 HOH HOH . I 5 HOH B 44 74 74 HOH HOH . I 5 HOH B 45 76 76 HOH HOH . I 5 HOH B 46 77 77 HOH HOH . I 5 HOH B 47 78 78 HOH HOH . I 5 HOH B 48 79 79 HOH HOH . I 5 HOH B 49 81 81 HOH HOH . I 5 HOH B 50 83 83 HOH HOH . I 5 HOH B 51 84 84 HOH HOH . I 5 HOH B 52 88 88 HOH HOH . I 5 HOH B 53 90 90 HOH HOH . I 5 HOH B 54 92 92 HOH HOH . I 5 HOH B 55 94 94 HOH HOH . I 5 HOH B 56 96 96 HOH HOH . I 5 HOH B 57 97 97 HOH HOH . I 5 HOH B 58 99 99 HOH HOH . I 5 HOH B 59 101 101 HOH HOH . I 5 HOH B 60 103 103 HOH HOH . I 5 HOH B 61 105 105 HOH HOH . I 5 HOH B 62 107 107 HOH HOH . I 5 HOH B 63 108 108 HOH HOH . I 5 HOH B 64 110 110 HOH HOH . I 5 HOH B 65 111 111 HOH HOH . I 5 HOH B 66 112 112 HOH HOH . I 5 HOH B 67 113 113 HOH HOH . I 5 HOH B 68 114 114 HOH HOH . I 5 HOH B 69 115 115 HOH HOH . I 5 HOH B 70 119 119 HOH HOH . I 5 HOH B 71 120 120 HOH HOH . I 5 HOH B 72 123 123 HOH HOH . I 5 HOH B 73 127 127 HOH HOH . I 5 HOH B 74 128 128 HOH HOH . I 5 HOH B 75 130 130 HOH HOH . I 5 HOH B 76 131 131 HOH HOH . I 5 HOH B 77 134 134 HOH HOH . I 5 HOH B 78 135 135 HOH HOH . I 5 HOH B 79 136 136 HOH HOH . I 5 HOH B 80 138 138 HOH HOH . I 5 HOH B 81 139 139 HOH HOH . I 5 HOH B 82 141 141 HOH HOH . I 5 HOH B 83 143 143 HOH HOH . I 5 HOH B 84 148 148 HOH HOH . I 5 HOH B 85 161 161 HOH HOH . I 5 HOH B 86 162 162 HOH HOH . I 5 HOH B 87 163 163 HOH HOH . I 5 HOH B 88 164 164 HOH HOH . I 5 HOH B 89 165 165 HOH HOH . I 5 HOH B 90 166 166 HOH HOH . I 5 HOH B 91 167 167 HOH HOH . I 5 HOH B 92 168 168 HOH HOH . I 5 HOH B 93 170 170 HOH HOH . I 5 HOH B 94 171 171 HOH HOH . I 5 HOH B 95 172 172 HOH HOH . I 5 HOH B 96 173 173 HOH HOH . I 5 HOH B 97 174 174 HOH HOH . I 5 HOH B 98 175 175 HOH HOH . I 5 HOH B 99 176 176 HOH HOH . I 5 HOH B 100 177 177 HOH HOH . I 5 HOH B 101 180 180 HOH HOH . I 5 HOH B 102 181 181 HOH HOH . I 5 HOH B 103 184 184 HOH HOH . I 5 HOH B 104 187 187 HOH HOH . I 5 HOH B 105 188 188 HOH HOH . I 5 HOH B 106 189 189 HOH HOH . I 5 HOH B 107 191 191 HOH HOH . I 5 HOH B 108 192 192 HOH HOH . I 5 HOH B 109 193 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 IDN . . . D 3 -1.468 18.022 136.692 1 88.11 ? C01 IDN 302 A 1 HETATM 2 C C02 IDN . . . D 3 -1.081 17.999 135.278 1 87.96 ? C02 IDN 302 A 1 HETATM 3 C C03 IDN . . . D 3 -0.362 19.142 134.759 1 87.55 ? C03 IDN 302 A 1 HETATM 4 C C04 IDN . . . D 3 -0.035 20.262 135.605 1 87 ? C04 IDN 302 A 1 HETATM 5 C C05 IDN . . . D 3 -0.47 20.196 136.996 1 87.53 ? C05 IDN 302 A 1 HETATM 6 N N06 IDN . . . D 3 -1.171 19.095 137.524 1 87.74 ? N06 IDN 302 A 1 HETATM 7 C C07 IDN . . . D 3 0.688 21.415 135.02 1 86.69 ? C07 IDN 302 A 1 HETATM 8 C C08 IDN . . . D 3 1.857 21.369 134.265 1 85.7 ? C08 IDN 302 A 1 HETATM 9 C C09 IDN . . . D 3 2.428 22.657 133.694 1 84.83 ? C09 IDN 302 A 1 HETATM 10 O O10 IDN . . . D 3 2.808 23.461 134.556 1 83.04 ? O10 IDN 302 A 1 HETATM 11 N N11 IDN . . . D 3 2.498 22.901 132.285 1 84.91 ? N11 IDN 302 A 1 HETATM 12 C C12 IDN . . . D 3 3.047 24.193 131.858 1 83.92 ? C12 IDN 302 A 1 HETATM 13 C C13 IDN . . . D 3 2.053 21.972 131.21 1 85.74 ? C13 IDN 302 A 1 HETATM 14 C C14 IDN . . . D 3 0.703 22.392 130.682 1 86.99 ? C14 IDN 302 A 1 HETATM 15 C C15 IDN . . . D 3 -0.54 21.933 131.158 1 87.47 ? C15 IDN 302 A 1 HETATM 16 N N16 IDN . . . D 3 -1.574 22.521 130.47 1 88.16 ? N16 IDN 302 A 1 HETATM 17 C C17 IDN . . . D 3 -1.033 23.403 129.493 1 88.12 ? C17 IDN 302 A 1 HETATM 18 C C18 IDN . . . D 3 0.433 23.332 129.616 1 87.71 ? C18 IDN 302 A 1 HETATM 19 N N19 IDN . . . D 3 -2.165 16.95 137.236 1 88.67 ? N19 IDN 302 A 1 HETATM 20 C C20 IDN . . . D 3 -3.027 22.295 130.69 1 87.64 ? C20 IDN 302 A 1 HETATM 21 C C21 IDN . . . D 3 0.68 24.992 127.763 1 88.22 ? C21 IDN 302 A 1 HETATM 22 C C22 IDN . . . D 3 -0.759 25.072 127.629 1 88.16 ? C22 IDN 302 A 1 HETATM 23 C C23 IDN . . . D 3 -1.61 24.276 128.498 1 88.3 ? C23 IDN 302 A 1 HETATM 24 C C24 IDN . . . D 3 1.275 24.12 128.76 1 87.86 ? C24 IDN 302 A 1 HETATM 25 C C25 IDN . . . D 3 -1.443 16.777 134.419 1 87.99 ? C25 IDN 302 A 1 HETATM 26 C C26 IDN . . . D 3 -1.65 15.461 135.256 1 88.37 ? C26 IDN 302 A 1 HETATM 27 C C27 IDN . . . D 3 -2.36 15.703 136.639 1 88.63 ? C27 IDN 302 A 1 HETATM 28 O O28 IDN . . . D 3 -3.004 14.808 137.176 1 88.75 ? O28 IDN 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #