data_1MG9
#
_model_server_result.job_id            47XO8-2UZy-cu6k-jchGnA 
_model_server_result.datetime_utc      '2024-10-24 04:32:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mg9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":200}' 
#
_entry.id    1MG9 
#
_exptl.entry_id    1MG9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              206.372 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SPERMINE (FULLY PROTONATED FORM)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MG9 
_cell.length_a            93.654 
_cell.length_b            93.654 
_cell.length_c            78.889 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MG9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H30 N4 4' 
_chem_comp.formula_weight    206.372 
_chem_comp.id                SPK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SPERMINE (FULLY PROTONATED FORM)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPK sing 290 n n 
N1 H1A SPK sing 291 n n 
N1 H1B SPK sing 292 n n 
N1 H1C SPK sing 293 n n 
C2 C3 SPK sing 294 n n 
C2 H2A SPK sing 295 n n 
C2 H2B SPK sing 296 n n 
C3 C4 SPK sing 297 n n 
C3 H3A SPK sing 298 n n 
C3 H3B SPK sing 299 n n 
C4 N5 SPK sing 300 n n 
C4 H4A SPK sing 301 n n 
C4 H4B SPK sing 302 n n 
N5 C6 SPK sing 303 n n 
N5 H5A SPK sing 304 n n 
N5 H5B SPK sing 305 n n 
C6 C7 SPK sing 306 n n 
C6 H6A SPK sing 307 n n 
C6 H6B SPK sing 308 n n 
C7 C8 SPK sing 309 n n 
C7 H7A SPK sing 310 n n 
C7 H7B SPK sing 311 n n 
C8 C9 SPK sing 312 n n 
C8 H8A SPK sing 313 n n 
C8 H8B SPK sing 314 n n 
C9 N10 SPK sing 315 n n 
C9 H9A SPK sing 316 n n 
C9 H9B SPK sing 317 n n 
N10 C11 SPK sing 318 n n 
N10 H101 SPK sing 319 n n 
N10 H102 SPK sing 320 n n 
C11 C12 SPK sing 321 n n 
C11 H111 SPK sing 322 n n 
C11 H112 SPK sing 323 n n 
C12 C13 SPK sing 324 n n 
C12 H121 SPK sing 325 n n 
C12 H122 SPK sing 326 n n 
C13 N14 SPK sing 327 n n 
C13 H131 SPK sing 328 n n 
C13 H132 SPK sing 329 n n 
N14 H141 SPK sing 330 n n 
N14 H142 SPK sing 331 n n 
N14 H143 SPK sing 332 n n 
#
_atom_sites.entry_id                     1MG9 
_atom_sites.fract_transf_matrix[1][1]    0.010678 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010678 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012676 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SPK B 1 200 200 SPK SPK . 
D 4 HOH A 1 107 2 HOH TIP . 
D 4 HOH A 2 108 5 HOH TIP . 
D 4 HOH A 3 109 7 HOH TIP . 
D 4 HOH A 4 110 9 HOH TIP . 
D 4 HOH A 5 111 10 HOH TIP . 
D 4 HOH A 6 112 13 HOH TIP . 
D 4 HOH A 7 113 16 HOH TIP . 
D 4 HOH A 8 114 17 HOH TIP . 
D 4 HOH A 9 115 18 HOH TIP . 
D 4 HOH A 10 116 19 HOH TIP . 
D 4 HOH A 11 117 20 HOH TIP . 
D 4 HOH A 12 118 23 HOH TIP . 
D 4 HOH A 13 119 26 HOH TIP . 
D 4 HOH A 14 120 27 HOH TIP . 
E 4 HOH B 1 201 1 HOH TIP . 
E 4 HOH B 2 202 3 HOH TIP . 
E 4 HOH B 3 203 4 HOH TIP . 
E 4 HOH B 4 204 6 HOH TIP . 
E 4 HOH B 5 205 8 HOH TIP . 
E 4 HOH B 6 206 11 HOH TIP . 
E 4 HOH B 7 207 12 HOH TIP . 
E 4 HOH B 8 208 14 HOH TIP . 
E 4 HOH B 9 209 15 HOH TIP . 
E 4 HOH B 10 210 21 HOH TIP . 
E 4 HOH B 11 211 22 HOH TIP . 
E 4 HOH B 12 212 24 HOH TIP . 
E 4 HOH B 13 213 25 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPK . . . C 3 142.535 56.303 -134.093 1 54.03 ? N1 SPK 200 B 1 
HETATM 2 C C2 SPK . . . C 3 141.329 56.412 -133.191 1 50.98 ? C2 SPK 200 B 1 
HETATM 3 C C3 SPK . . . C 3 140.173 55.624 -133.652 1 50.8 ? C3 SPK 200 B 1 
HETATM 4 C C4 SPK . . . C 3 138.854 56.058 -133.099 1 51.78 ? C4 SPK 200 B 1 
HETATM 5 N N5 SPK . . . C 3 138.166 55.16 -132.123 1 50.29 ? N5 SPK 200 B 1 
HETATM 6 C C6 SPK . . . C 3 136.888 55.766 -131.688 1 55.2 ? C6 SPK 200 B 1 
HETATM 7 C C7 SPK . . . C 3 135.89 55.833 -132.816 1 57.2 ? C7 SPK 200 B 1 
HETATM 8 C C8 SPK . . . C 3 134.572 56.454 -132.489 1 60.54 ? C8 SPK 200 B 1 
HETATM 9 C C9 SPK . . . C 3 133.881 56.91 -133.754 1 61.71 ? C9 SPK 200 B 1 
HETATM 10 N N10 SPK . . . C 3 132.563 57.529 -133.448 1 67.46 ? N10 SPK 200 B 1 
HETATM 11 C C11 SPK . . . C 3 131.852 57.997 -134.678 1 67.56 ? C11 SPK 200 B 1 
HETATM 12 C C12 SPK . . . C 3 130.531 58.628 -134.346 1 68.83 ? C12 SPK 200 B 1 
HETATM 13 C C13 SPK . . . C 3 129.764 59.13 -135.529 1 71.33 ? C13 SPK 200 B 1 
HETATM 14 N N14 SPK . . . C 3 129.106 60.471 -135.321 1 71.52 ? N14 SPK 200 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#