data_1MG9 # _model_server_result.job_id vpE2YANwcnco1xmORwBbRg _model_server_result.datetime_utc '2024-11-24 11:48:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 1MG9 # _exptl.entry_id 1MG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.372 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SPERMINE (FULLY PROTONATED FORM)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MG9 _cell.length_a 93.654 _cell.length_b 93.654 _cell.length_c 78.889 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H30 N4 4' _chem_comp.formula_weight 206.372 _chem_comp.id SPK _chem_comp.mon_nstd_flag . _chem_comp.name 'SPERMINE (FULLY PROTONATED FORM)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPK sing 290 n n N1 H1A SPK sing 291 n n N1 H1B SPK sing 292 n n N1 H1C SPK sing 293 n n C2 C3 SPK sing 294 n n C2 H2A SPK sing 295 n n C2 H2B SPK sing 296 n n C3 C4 SPK sing 297 n n C3 H3A SPK sing 298 n n C3 H3B SPK sing 299 n n C4 N5 SPK sing 300 n n C4 H4A SPK sing 301 n n C4 H4B SPK sing 302 n n N5 C6 SPK sing 303 n n N5 H5A SPK sing 304 n n N5 H5B SPK sing 305 n n C6 C7 SPK sing 306 n n C6 H6A SPK sing 307 n n C6 H6B SPK sing 308 n n C7 C8 SPK sing 309 n n C7 H7A SPK sing 310 n n C7 H7B SPK sing 311 n n C8 C9 SPK sing 312 n n C8 H8A SPK sing 313 n n C8 H8B SPK sing 314 n n C9 N10 SPK sing 315 n n C9 H9A SPK sing 316 n n C9 H9B SPK sing 317 n n N10 C11 SPK sing 318 n n N10 H101 SPK sing 319 n n N10 H102 SPK sing 320 n n C11 C12 SPK sing 321 n n C11 H111 SPK sing 322 n n C11 H112 SPK sing 323 n n C12 C13 SPK sing 324 n n C12 H121 SPK sing 325 n n C12 H122 SPK sing 326 n n C13 N14 SPK sing 327 n n C13 H131 SPK sing 328 n n C13 H132 SPK sing 329 n n N14 H141 SPK sing 330 n n N14 H142 SPK sing 331 n n N14 H143 SPK sing 332 n n # _atom_sites.entry_id 1MG9 _atom_sites.fract_transf_matrix[1][1] 0.010678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SPK B 1 200 200 SPK SPK . D 4 HOH A 1 107 2 HOH TIP . D 4 HOH A 2 108 5 HOH TIP . D 4 HOH A 3 109 7 HOH TIP . D 4 HOH A 4 110 9 HOH TIP . D 4 HOH A 5 111 10 HOH TIP . D 4 HOH A 6 112 13 HOH TIP . D 4 HOH A 7 113 16 HOH TIP . D 4 HOH A 8 114 17 HOH TIP . D 4 HOH A 9 115 18 HOH TIP . D 4 HOH A 10 116 19 HOH TIP . D 4 HOH A 11 117 20 HOH TIP . D 4 HOH A 12 118 23 HOH TIP . D 4 HOH A 13 119 26 HOH TIP . D 4 HOH A 14 120 27 HOH TIP . E 4 HOH B 1 201 1 HOH TIP . E 4 HOH B 2 202 3 HOH TIP . E 4 HOH B 3 203 4 HOH TIP . E 4 HOH B 4 204 6 HOH TIP . E 4 HOH B 5 205 8 HOH TIP . E 4 HOH B 6 206 11 HOH TIP . E 4 HOH B 7 207 12 HOH TIP . E 4 HOH B 8 208 14 HOH TIP . E 4 HOH B 9 209 15 HOH TIP . E 4 HOH B 10 210 21 HOH TIP . E 4 HOH B 11 211 22 HOH TIP . E 4 HOH B 12 212 24 HOH TIP . E 4 HOH B 13 213 25 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPK . . . C 3 142.535 56.303 -134.093 1 54.03 ? N1 SPK 200 B 1 HETATM 2 C C2 SPK . . . C 3 141.329 56.412 -133.191 1 50.98 ? C2 SPK 200 B 1 HETATM 3 C C3 SPK . . . C 3 140.173 55.624 -133.652 1 50.8 ? C3 SPK 200 B 1 HETATM 4 C C4 SPK . . . C 3 138.854 56.058 -133.099 1 51.78 ? C4 SPK 200 B 1 HETATM 5 N N5 SPK . . . C 3 138.166 55.16 -132.123 1 50.29 ? N5 SPK 200 B 1 HETATM 6 C C6 SPK . . . C 3 136.888 55.766 -131.688 1 55.2 ? C6 SPK 200 B 1 HETATM 7 C C7 SPK . . . C 3 135.89 55.833 -132.816 1 57.2 ? C7 SPK 200 B 1 HETATM 8 C C8 SPK . . . C 3 134.572 56.454 -132.489 1 60.54 ? C8 SPK 200 B 1 HETATM 9 C C9 SPK . . . C 3 133.881 56.91 -133.754 1 61.71 ? C9 SPK 200 B 1 HETATM 10 N N10 SPK . . . C 3 132.563 57.529 -133.448 1 67.46 ? N10 SPK 200 B 1 HETATM 11 C C11 SPK . . . C 3 131.852 57.997 -134.678 1 67.56 ? C11 SPK 200 B 1 HETATM 12 C C12 SPK . . . C 3 130.531 58.628 -134.346 1 68.83 ? C12 SPK 200 B 1 HETATM 13 C C13 SPK . . . C 3 129.764 59.13 -135.529 1 71.33 ? C13 SPK 200 B 1 HETATM 14 N N14 SPK . . . C 3 129.106 60.471 -135.321 1 71.52 ? N14 SPK 200 B 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #