data_1MGY # _model_server_result.job_id uGpNPoN81hZ73uivYAPcAg _model_server_result.datetime_utc '2025-02-28 22:28:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 1MGY # _exptl.entry_id 1MGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MGY _cell.length_a 52.498 _cell.length_b 121.326 _cell.length_c 73.875 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.282 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 373 n n C1 C6 RET sing 374 n n C1 C16 RET sing 375 n n C1 C17 RET sing 376 n n C2 C3 RET sing 377 n n C2 H21 RET sing 378 n n C2 H22 RET sing 379 n n C3 C4 RET sing 380 n n C3 H31 RET sing 381 n n C3 H32 RET sing 382 n n C4 C5 RET sing 383 n n C4 H41 RET sing 384 n n C4 H42 RET sing 385 n n C5 C6 RET doub 386 n n C5 C18 RET sing 387 n n C6 C7 RET sing 388 n n C7 C8 RET doub 389 e n C7 H7 RET sing 390 n n C8 C9 RET sing 391 n n C8 H8 RET sing 392 n n C9 C10 RET doub 393 e n C9 C19 RET sing 394 n n C10 C11 RET sing 395 n n C10 H10 RET sing 396 n n C11 C12 RET doub 397 e n C11 H11 RET sing 398 n n C12 C13 RET sing 399 n n C12 H12 RET sing 400 n n C13 C14 RET doub 401 e n C13 C20 RET sing 402 n n C14 C15 RET sing 403 n n C14 H14 RET sing 404 n n C15 O1 RET doub 405 n n C15 H15 RET sing 406 n n C16 H161 RET sing 407 n n C16 H162 RET sing 408 n n C16 H163 RET sing 409 n n C17 H171 RET sing 410 n n C17 H172 RET sing 411 n n C17 H173 RET sing 412 n n C18 H181 RET sing 413 n n C18 H182 RET sing 414 n n C18 H183 RET sing 415 n n C19 H191 RET sing 416 n n C19 H192 RET sing 417 n n C19 H193 RET sing 418 n n C20 H201 RET sing 419 n n C20 H202 RET sing 420 n n C20 H203 RET sing 421 n n # _atom_sites.entry_id 1MGY _atom_sites.fract_transf_matrix[1][1] 0.019048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BR A 1 901 901 BR BR1 . C 2 BR A 1 902 902 BR BR1 . D 3 K A 1 802 802 K K1 . E 4 RET A 1 301 301 RET RET . F 5 LI1 A 1 601 601 LI1 LI1 . G 5 LI1 A 1 602 602 LI1 LI1 . H 5 LI1 A 1 603 603 LI1 LI1 . I 5 LI1 A 1 605 605 LI1 LI1 . J 5 LI1 A 1 606 606 LI1 LI1 . K 5 LI1 A 1 608 608 LI1 LI1 . L 5 LI1 A 1 609 609 LI1 LI1 . M 5 LI1 A 1 610 610 LI1 LI1 . N 6 HOH A 1 405 405 HOH HOH . N 6 HOH A 2 407 407 HOH HOH . N 6 HOH A 3 408 408 HOH HOH . N 6 HOH A 4 410 410 HOH HOH . N 6 HOH A 5 420 420 HOH HOH . N 6 HOH A 6 422 422 HOH HOH . N 6 HOH A 7 423 423 HOH HOH . N 6 HOH A 8 424 424 HOH HOH . N 6 HOH A 9 425 425 HOH HOH . N 6 HOH A 10 426 426 HOH HOH . N 6 HOH A 11 427 427 HOH HOH . N 6 HOH A 12 428 428 HOH HOH . N 6 HOH A 13 429 429 HOH HOH . N 6 HOH A 14 430 430 HOH HOH . N 6 HOH A 15 431 431 HOH HOH . N 6 HOH A 16 432 432 HOH HOH . N 6 HOH A 17 433 433 HOH HOH . N 6 HOH A 18 501 501 HOH HOH . N 6 HOH A 19 502 502 HOH HOH . N 6 HOH A 20 510 510 HOH HOH . N 6 HOH A 21 511 511 HOH HOH . N 6 HOH A 22 512 512 HOH HOH . N 6 HOH A 23 513 513 HOH HOH . N 6 HOH A 24 515 515 HOH HOH . N 6 HOH A 25 520 520 HOH HOH . N 6 HOH A 26 522 522 HOH HOH . N 6 HOH A 27 523 523 HOH HOH . N 6 HOH A 28 524 524 HOH HOH . N 6 HOH A 29 525 525 HOH HOH . N 6 HOH A 30 527 527 HOH HOH . N 6 HOH A 31 530 530 HOH HOH . N 6 HOH A 32 531 531 HOH HOH . N 6 HOH A 33 532 532 HOH HOH . N 6 HOH A 34 533 533 HOH HOH . N 6 HOH A 35 534 534 HOH HOH . N 6 HOH A 36 535 535 HOH HOH . N 6 HOH A 37 536 536 HOH HOH . N 6 HOH A 38 537 537 HOH HOH . N 6 HOH A 39 538 538 HOH HOH . N 6 HOH A 40 539 539 HOH HOH . N 6 HOH A 41 540 540 HOH HOH . N 6 HOH A 42 541 541 HOH HOH . N 6 HOH A 43 542 542 HOH HOH . N 6 HOH A 44 543 543 HOH HOH . N 6 HOH A 45 544 544 HOH HOH . N 6 HOH A 46 545 545 HOH HOH . N 6 HOH A 47 546 546 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . E 4 4.225 35.243 32.644 1 13.07 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . E 4 3.968 36.446 31.74 1 14.41 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . E 4 2.718 36.405 30.975 1 13.37 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . E 4 2.54 35.123 30.215 1 12.68 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . E 4 2.8 33.87 31.039 1 10.46 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . E 4 3.549 33.936 32.161 1 11.73 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . E 4 3.656 32.659 32.883 1 12.14 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . E 4 4.319 32.381 34.042 1 10.86 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . E 4 4.377 31.101 34.73 1 11.84 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . E 4 5.096 31.142 35.881 1 12.23 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . E 4 5.238 29.941 36.727 1 13.71 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . E 4 5.98 30.212 37.849 1 13.25 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . E 4 6.26 29.208 38.865 1 13.5 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . E 4 7.001 29.71 39.88 1 15.91 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . E 4 7.55 28.879 40.931 1 17.83 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . E 4 5.768 35.018 32.721 1 11.89 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . E 4 3.687 35.767 34.041 1 11.89 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . E 4 2.093 32.705 30.437 1 10.05 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . E 4 3.68 29.882 34.216 1 11.55 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . E 4 5.755 27.808 38.754 1 15.65 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #