data_1MHT # _model_server_result.job_id ydOeIGOD5lU0NBXKoc6KiA _model_server_result.datetime_utc '2025-03-01 09:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":328}' # _entry.id 1MHT # _exptl.entry_id 1MHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MHT _cell.length_a 99.86 _cell.length_b 99.86 _cell.length_c 325.2 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MHT _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 5 B DG 406 1_555 A P C36 6 B C36 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale2 A O3' C36 6 B C36 407 1_555 A P DG 7 B DG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale3 B O3' DG 6 C DG 426 1_555 B P C36 7 C C36 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale4 B O3' C36 7 C C36 427 1_555 B P DG 8 C DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? covale ? covale5 B C6 C36 7 C C36 427 1_555 C SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 B DG 402 1_555 B N3 DC 13 C DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 B DG 402 1_555 B O2 DC 13 C DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 B DG 402 1_555 B N4 DC 13 C DC 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 B DA 403 1_555 B N3 DT 12 C DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 B DA 403 1_555 B O4 DT 12 C DT 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 B DT 404 1_555 B N1 DA 11 C DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 B DT 404 1_555 B N6 DA 11 C DA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 4 B DA 405 1_555 B N3 DT 10 C DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 4 B DA 405 1_555 B O4 DT 10 C DT 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 5 B DG 406 1_555 B N3 DC 9 C DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 5 B DG 406 1_555 B O2 DC 9 C DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 5 B DG 406 1_555 B N4 DC 9 C DC 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 C36 6 B C36 407 1_555 B N1 DG 8 C DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 C36 6 B C36 407 1_555 B O6 DG 8 C DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 C36 6 B C36 407 1_555 B N2 DG 8 C DG 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 8 B DC 409 1_555 B N1 DG 6 C DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 8 B DC 409 1_555 B O6 DG 6 C DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 8 B DC 409 1_555 B N2 DG 6 C DG 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 9 B DT 410 1_555 B N1 DA 5 C DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 9 B DT 410 1_555 B N6 DA 5 C DA 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DA 10 B DA 411 1_555 B N3 DT 4 C DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N6 DA 10 B DA 411 1_555 B O4 DT 4 C DT 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DT 11 B DT 412 1_555 B N1 DA 3 C DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O4 DT 11 B DT 412 1_555 B N6 DA 3 C DA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 12 B DC 413 1_555 B N1 DG 2 C DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 12 B DC 413 1_555 B O6 DG 2 C DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 12 B DC 413 1_555 B N2 DG 2 C DG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 465 n n N HN1 SAH sing 466 n n N HN2 SAH sing 467 n n CA CB SAH sing 468 n n CA C SAH sing 469 n n CA HA SAH sing 470 n n CB CG SAH sing 471 n n CB HB1 SAH sing 472 n n CB HB2 SAH sing 473 n n CG SD SAH sing 474 n n CG HG1 SAH sing 475 n n CG HG2 SAH sing 476 n n SD C5' SAH sing 477 n n C O SAH doub 478 n n C OXT SAH sing 479 n n OXT HXT SAH sing 480 n n C5' C4' SAH sing 481 n n C5' "H5'1" SAH sing 482 n n C5' "H5'2" SAH sing 483 n n C4' O4' SAH sing 484 n n C4' C3' SAH sing 485 n n C4' H4' SAH sing 486 n n O4' C1' SAH sing 487 n n C3' O3' SAH sing 488 n n C3' C2' SAH sing 489 n n C3' H3' SAH sing 490 n n O3' HO3' SAH sing 491 n n C2' O2' SAH sing 492 n n C2' C1' SAH sing 493 n n C2' H2' SAH sing 494 n n O2' HO2' SAH sing 495 n n C1' N9 SAH sing 496 n n C1' H1' SAH sing 497 n n N9 C8 SAH sing 498 n y N9 C4 SAH sing 499 n y C8 N7 SAH doub 500 n y C8 H8 SAH sing 501 n n N7 C5 SAH sing 502 n y C5 C6 SAH sing 503 n y C5 C4 SAH doub 504 n y C6 N6 SAH sing 505 n n C6 N1 SAH doub 506 n y N6 HN61 SAH sing 507 n n N6 HN62 SAH sing 508 n n N1 C2 SAH sing 509 n y C2 N3 SAH doub 510 n y C2 H2 SAH sing 511 n n N3 C4 SAH sing 512 n y # _atom_sites.entry_id 1MHT _atom_sites.fract_transf_matrix[1][1] 0.010014 _atom_sites.fract_transf_matrix[1][2] 0.005782 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 328 _pdbx_nonpoly_scheme.auth_seq_num 328 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 4 -19.196 31.451 81.18 1 2 ? N SAH 328 A 1 HETATM 2 C CA SAH . . . D 4 -19.7 30.498 82.158 1 5.6 ? CA SAH 328 A 1 HETATM 3 C CB SAH . . . D 4 -19.676 30.976 83.608 1 2 ? CB SAH 328 A 1 HETATM 4 C CG SAH . . . D 4 -18.373 31.608 84.044 1 3.91 ? CG SAH 328 A 1 HETATM 5 S SD SAH . . . D 4 -18.453 31.798 85.853 1 13.06 ? SD SAH 328 A 1 HETATM 6 C C SAH . . . D 4 -21.146 30.283 81.758 1 9.76 ? C SAH 328 A 1 HETATM 7 O O SAH . . . D 4 -21.522 30.826 80.648 1 16.21 ? O SAH 328 A 1 HETATM 8 O OXT SAH . . . D 4 -22.053 30.205 82.678 1 11.84 ? OXT SAH 328 A 1 HETATM 9 C C5' SAH . . . D 4 -16.887 31.239 86.563 1 8.36 ? C5' SAH 328 A 1 HETATM 10 C C4' SAH . . . D 4 -16.927 29.776 87.03 1 14.83 ? C4' SAH 328 A 1 HETATM 11 O O4' SAH . . . D 4 -15.649 29.404 87.439 1 15.01 ? O4' SAH 328 A 1 HETATM 12 C C3' SAH . . . D 4 -17.787 29.476 88.251 1 15.85 ? C3' SAH 328 A 1 HETATM 13 O O3' SAH . . . D 4 -18.717 28.439 87.929 1 13.4 ? O3' SAH 328 A 1 HETATM 14 C C2' SAH . . . D 4 -16.765 28.939 89.249 1 15.21 ? C2' SAH 328 A 1 HETATM 15 O O2' SAH . . . D 4 -17.366 27.95 90.057 1 13.65 ? O2' SAH 328 A 1 HETATM 16 C C1' SAH . . . D 4 -15.805 28.32 88.324 1 11.43 ? C1' SAH 328 A 1 HETATM 17 N N9 SAH . . . D 4 -14.536 28.166 88.939 1 18.36 ? N9 SAH 328 A 1 HETATM 18 C C8 SAH . . . D 4 -13.863 29.083 89.749 1 18.08 ? C8 SAH 328 A 1 HETATM 19 N N7 SAH . . . D 4 -12.703 28.662 90.145 1 18.27 ? N7 SAH 328 A 1 HETATM 20 C C5 SAH . . . D 4 -12.601 27.386 89.561 1 20.52 ? C5 SAH 328 A 1 HETATM 21 C C6 SAH . . . D 4 -11.601 26.418 89.611 1 21.18 ? C6 SAH 328 A 1 HETATM 22 N N6 SAH . . . D 4 -10.467 26.576 90.301 1 16.81 ? N6 SAH 328 A 1 HETATM 23 N N1 SAH . . . D 4 -11.844 25.287 88.909 1 24.25 ? N1 SAH 328 A 1 HETATM 24 C C2 SAH . . . D 4 -12.973 25.097 88.208 1 16.76 ? C2 SAH 328 A 1 HETATM 25 N N3 SAH . . . D 4 -13.98 25.907 88.084 1 15.43 ? N3 SAH 328 A 1 HETATM 26 C C4 SAH . . . D 4 -13.717 27.063 88.808 1 20.08 ? C4 SAH 328 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #