data_1MIY # _model_server_result.job_id pe7t7b5j_o4CTuZcmoH9mg _model_server_result.datetime_utc '2024-10-18 19:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1miy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":6601}' # _entry.id 1MIY # _exptl.entry_id 1MIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MIY _cell.length_a 105.552 _cell.length_b 105.552 _cell.length_c 182.745 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MIY _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 77 A ALA 77 1_555 D MG MG . A MG 5611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc2 E O1A CTP . A CTP 5501 1_555 C MG MG . A MG 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc3 E O3A CTP . A CTP 5501 1_555 C MG MG . A MG 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc4 E O1G CTP . A CTP 5501 1_555 C MG MG . A MG 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc5 D MG MG . A MG 5611 1_555 I O HOH . A HOH 5612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 D MG MG . A MG 5611 1_555 B NZ LYS 58 B LYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc7 B O ALA 77 B ALA 77 1_555 G MG MG . B MG 6611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc8 H O1G CTP . B CTP 6501 1_555 F MG MG . B MG 6601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc9 H O3A CTP . B CTP 6501 1_555 F MG MG . B MG 6601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc10 H O1A CTP . B CTP 6501 1_555 F MG MG . B MG 6601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc11 G MG MG . B MG 6611 1_555 J O HOH . B HOH 6612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MIY _atom_sites.fract_transf_matrix[1][1] 0.009474 _atom_sites.fract_transf_matrix[1][2] 0.00547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 5601 5601 MG MG . D 2 MG A 1 5611 5611 MG MG . E 3 CTP A 1 5501 5501 CTP CTP . F 2 MG B 1 6601 6601 MG MG . G 2 MG B 1 6611 6611 MG MG . H 3 CTP B 1 6501 6501 CTP CTP . I 4 HOH A 1 5602 5602 HOH HOH . I 4 HOH A 2 5612 5612 HOH HOH . I 4 HOH A 3 5613 5613 HOH HOH . I 4 HOH A 4 5703 5703 HOH HOH . I 4 HOH A 5 5704 5704 HOH HOH . I 4 HOH A 6 5706 5706 HOH HOH . I 4 HOH A 7 5707 5707 HOH HOH . I 4 HOH A 8 5801 5801 HOH HOH . I 4 HOH A 9 5802 5802 HOH HOH . I 4 HOH A 10 5803 5803 HOH HOH . I 4 HOH A 11 5804 5804 HOH HOH . I 4 HOH A 12 5805 5805 HOH HOH . I 4 HOH A 13 5806 5806 HOH HOH . I 4 HOH A 14 5807 5807 HOH HOH . I 4 HOH A 15 5901 5901 HOH HOH . I 4 HOH A 16 5902 5902 HOH HOH . I 4 HOH A 17 6614 6614 HOH HOH . J 4 HOH B 1 5614 5614 HOH HOH . J 4 HOH B 2 6602 6602 HOH HOH . J 4 HOH B 3 6612 6612 HOH HOH . J 4 HOH B 4 6613 6613 HOH HOH . J 4 HOH B 5 6703 6703 HOH HOH . J 4 HOH B 6 6704 6704 HOH HOH . J 4 HOH B 7 6706 6706 HOH HOH . J 4 HOH B 8 6707 6707 HOH HOH . J 4 HOH B 9 6801 6801 HOH HOH . J 4 HOH B 10 6802 6802 HOH HOH . J 4 HOH B 11 6803 6803 HOH HOH . J 4 HOH B 12 6804 6804 HOH HOH . J 4 HOH B 13 6805 6805 HOH HOH . J 4 HOH B 14 6806 6806 HOH HOH . J 4 HOH B 15 6807 6807 HOH HOH . J 4 HOH B 16 6901 6901 HOH HOH . J 4 HOH B 17 6902 6902 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.12 _atom_site.Cartn_y 35.937 _atom_site.Cartn_z 56.266 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 6601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #