data_1MJ4
#
_model_server_result.job_id            W9ZuibSo--H8rGzOD-0EAw 
_model_server_result.datetime_utc      '2024-10-20 01:21:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mj4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    1MJ4 
#
_exptl.entry_id    1MJ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.78 
_cell.angle_gamma         90 
_cell.entry_id            1MJ4 
_cell.length_a            98.899 
_cell.length_b            35.447 
_cell.length_c            26.263 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MJ4 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 40 A HIS 40 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc2 A NE2 HIS 65 A HIS 65 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1MJ4 
_atom_sites.fract_transf_matrix[1][1]    0.010111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000668 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028211 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.038159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 83 1 SO4 SUL . 
C 3 HEM A 1 502 502 HEM HEM . 
D 4 GOL A 1 9601 9601 GOL GOL . 
E 5 HOH A 1 503 503 HOH HOH . 
E 5 HOH A 2 504 504 HOH HOH . 
E 5 HOH A 3 505 505 HOH HOH . 
E 5 HOH A 4 506 506 HOH HOH . 
E 5 HOH A 5 507 507 HOH HOH . 
E 5 HOH A 6 508 508 HOH HOH . 
E 5 HOH A 7 509 509 HOH HOH . 
E 5 HOH A 8 510 510 HOH HOH . 
E 5 HOH A 9 511 511 HOH HOH . 
E 5 HOH A 10 512 512 HOH HOH . 
E 5 HOH A 11 513 513 HOH HOH . 
E 5 HOH A 12 514 514 HOH HOH . 
E 5 HOH A 13 515 515 HOH HOH . 
E 5 HOH A 14 516 516 HOH HOH . 
E 5 HOH A 15 517 517 HOH HOH . 
E 5 HOH A 16 518 518 HOH HOH . 
E 5 HOH A 17 519 519 HOH HOH . 
E 5 HOH A 18 520 520 HOH HOH . 
E 5 HOH A 19 521 521 HOH HOH . 
E 5 HOH A 20 523 523 HOH HOH . 
E 5 HOH A 21 524 524 HOH HOH . 
E 5 HOH A 22 525 525 HOH HOH . 
E 5 HOH A 23 526 526 HOH HOH . 
E 5 HOH A 24 527 527 HOH HOH . 
E 5 HOH A 25 528 528 HOH HOH . 
E 5 HOH A 26 529 529 HOH HOH . 
E 5 HOH A 27 530 530 HOH HOH . 
E 5 HOH A 28 531 531 HOH HOH . 
E 5 HOH A 29 532 532 HOH HOH . 
E 5 HOH A 30 533 533 HOH HOH . 
E 5 HOH A 31 534 534 HOH HOH . 
E 5 HOH A 32 535 535 HOH HOH . 
E 5 HOH A 33 536 536 HOH HOH . 
E 5 HOH A 34 537 537 HOH HOH . 
E 5 HOH A 35 538 538 HOH HOH . 
E 5 HOH A 36 539 539 HOH HOH . 
E 5 HOH A 37 540 540 HOH HOH . 
E 5 HOH A 38 541 541 HOH HOH . 
E 5 HOH A 39 542 542 HOH HOH . 
E 5 HOH A 40 543 543 HOH HOH . 
E 5 HOH A 41 544 544 HOH HOH . 
E 5 HOH A 42 545 545 HOH HOH . 
E 5 HOH A 43 546 546 HOH HOH . 
E 5 HOH A 44 547 547 HOH HOH . 
E 5 HOH A 45 548 548 HOH HOH . 
E 5 HOH A 46 549 549 HOH HOH . 
E 5 HOH A 47 550 550 HOH HOH . 
E 5 HOH A 48 551 551 HOH HOH . 
E 5 HOH A 49 552 552 HOH HOH . 
E 5 HOH A 50 553 553 HOH HOH . 
E 5 HOH A 51 554 554 HOH HOH . 
E 5 HOH A 52 555 555 HOH HOH . 
E 5 HOH A 53 556 556 HOH HOH . 
E 5 HOH A 54 558 558 HOH HOH . 
E 5 HOH A 55 559 559 HOH HOH . 
E 5 HOH A 56 560 560 HOH HOH . 
E 5 HOH A 57 561 561 HOH HOH . 
E 5 HOH A 58 562 562 HOH HOH . 
E 5 HOH A 59 563 563 HOH HOH . 
E 5 HOH A 60 564 564 HOH HOH . 
E 5 HOH A 61 565 565 HOH HOH . 
E 5 HOH A 62 566 566 HOH HOH . 
E 5 HOH A 63 567 567 HOH HOH . 
E 5 HOH A 64 568 568 HOH HOH . 
E 5 HOH A 65 569 569 HOH HOH . 
E 5 HOH A 66 570 570 HOH HOH . 
E 5 HOH A 67 571 571 HOH HOH . 
E 5 HOH A 68 572 572 HOH HOH . 
E 5 HOH A 69 573 573 HOH HOH . 
E 5 HOH A 70 574 574 HOH HOH . 
E 5 HOH A 71 575 575 HOH HOH . 
E 5 HOH A 72 576 576 HOH HOH . 
E 5 HOH A 73 577 577 HOH HOH . 
E 5 HOH A 74 578 578 HOH HOH . 
E 5 HOH A 75 579 579 HOH HOH . 
E 5 HOH A 76 580 580 HOH HOH . 
E 5 HOH A 77 581 581 HOH HOH . 
E 5 HOH A 78 582 582 HOH HOH . 
E 5 HOH A 79 583 583 HOH HOH . 
E 5 HOH A 80 584 584 HOH HOH . 
E 5 HOH A 81 585 585 HOH HOH . 
E 5 HOH A 82 586 586 HOH HOH . 
E 5 HOH A 83 587 587 HOH HOH . 
E 5 HOH A 84 588 588 HOH HOH . 
E 5 HOH A 85 589 589 HOH HOH . 
E 5 HOH A 86 590 590 HOH HOH . 
E 5 HOH A 87 591 591 HOH HOH . 
E 5 HOH A 88 592 592 HOH HOH . 
E 5 HOH A 89 593 593 HOH HOH . 
E 5 HOH A 90 594 594 HOH HOH . 
E 5 HOH A 91 595 595 HOH HOH . 
E 5 HOH A 92 596 596 HOH HOH . 
E 5 HOH A 93 597 597 HOH HOH . 
E 5 HOH A 94 598 598 HOH HOH . 
E 5 HOH A 95 599 599 HOH HOH . 
E 5 HOH A 96 600 600 HOH HOH . 
E 5 HOH A 97 601 601 HOH HOH . 
E 5 HOH A 98 602 602 HOH HOH . 
E 5 HOH A 99 603 603 HOH HOH . 
E 5 HOH A 100 604 604 HOH HOH . 
E 5 HOH A 101 605 605 HOH HOH . 
E 5 HOH A 102 606 606 HOH HOH . 
E 5 HOH A 103 607 607 HOH HOH . 
E 5 HOH A 104 608 608 HOH HOH . 
E 5 HOH A 105 609 609 HOH HOH . 
E 5 HOH A 106 610 610 HOH HOH . 
E 5 HOH A 107 611 611 HOH HOH . 
E 5 HOH A 108 612 612 HOH HOH . 
E 5 HOH A 109 613 613 HOH HOH . 
E 5 HOH A 110 614 614 HOH HOH . 
E 5 HOH A 111 615 615 HOH HOH . 
E 5 HOH A 112 616 616 HOH HOH . 
E 5 HOH A 113 618 618 HOH HOH . 
E 5 HOH A 114 619 619 HOH HOH . 
E 5 HOH A 115 620 620 HOH HOH . 
E 5 HOH A 116 621 621 HOH HOH . 
E 5 HOH A 117 622 622 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 28.639 2.652 8.135 1 8.49 ? CHA HEM 502 A 1 
HETATM 2 C CHB HEM . . . C 3 24.018 3.125 9.336 1 7.5 ? CHB HEM 502 A 1 
HETATM 3 C CHC HEM . . . C 3 22.834 0.265 5.65 1 6.01 ? CHC HEM 502 A 1 
HETATM 4 C CHD HEM . . . C 3 27.487 -0.343 4.586 1 7.63 ? CHD HEM 502 A 1 
HETATM 5 C C1A HEM . . . C 3 27.515 2.979 8.823 1 7.37 ? C1A HEM 502 A 1 
HETATM 6 C C2A HEM . . . C 3 27.438 3.839 10.023 1 7.85 ? C2A HEM 502 A 1 
HETATM 7 C C3A HEM . . . C 3 26.142 4.006 10.307 1 7.78 ? C3A HEM 502 A 1 
HETATM 8 C C4A HEM . . . C 3 25.388 3.211 9.334 1 7.25 ? C4A HEM 502 A 1 
HETATM 9 C CMA HEM . . . C 3 25.527 4.827 11.413 1 9.01 ? CMA HEM 502 A 1 
HETATM 10 C CAA HEM . . . C 3 28.656 4.399 10.748 1 9.21 ? CAA HEM 502 A 1 
HETATM 11 C CBA HEM . . . C 3 29.004 3.598 11.999 1 9.97 ? CBA HEM 502 A 1 
HETATM 12 C CGA HEM . . . C 3 30.187 4.057 12.762 1 10.71 ? CGA HEM 502 A 1 
HETATM 13 O O1A HEM . . . C 3 31.201 4.272 12.055 1 18.75 ? O1A HEM 502 A 1 
HETATM 14 O O2A HEM . . . C 3 30.228 4.08 13.96 1 10.26 ? O2A HEM 502 A 1 
HETATM 15 C C1B HEM . . . C 3 23.314 2.353 8.464 1 6.55 ? C1B HEM 502 A 1 
HETATM 16 C C2B HEM . . . C 3 21.868 2.325 8.384 1 6.66 ? C2B HEM 502 A 1 
HETATM 17 C C3B HEM . . . C 3 21.527 1.595 7.313 1 6.82 ? C3B HEM 502 A 1 
HETATM 18 C C4B HEM . . . C 3 22.741 1.131 6.731 1 6.43 ? C4B HEM 502 A 1 
HETATM 19 C CMB HEM . . . C 3 20.984 2.968 9.414 1 9.5 ? CMB HEM 502 A 1 
HETATM 20 C CAB HEM . . . C 3 20.198 1.261 6.784 1 8.37 ? CAB HEM 502 A 1 
HETATM 21 C CBB HEM . . . C 3 19.06 1.884 6.946 1 9.89 ? CBB HEM 502 A 1 
HETATM 22 C C1C HEM . . . C 3 23.974 -0.212 5.062 1 6.86 ? C1C HEM 502 A 1 
HETATM 23 C C2C HEM . . . C 3 24.063 -1.217 4.009 1 6.8 ? C2C HEM 502 A 1 
HETATM 24 C C3C HEM . . . C 3 25.38 -1.383 3.726 1 6.86 ? C3C HEM 502 A 1 
HETATM 25 C C4C HEM . . . C 3 26.119 -0.502 4.606 1 6.98 ? C4C HEM 502 A 1 
HETATM 26 C CMC HEM . . . C 3 22.884 -1.86 3.437 1 8 ? CMC HEM 502 A 1 
HETATM 27 C CAC HEM . . . C 3 26.015 -2.33 2.777 1 9.14 ? CAC HEM 502 A 1 
HETATM 28 C CBC HEM . . . C 3 25.543 -2.805 1.664 1 10.14 ? CBC HEM 502 A 1 
HETATM 29 C C1D HEM . . . C 3 28.201 0.525 5.365 1 8.23 ? C1D HEM 502 A 1 
HETATM 30 C C2D HEM . . . C 3 29.601 0.736 5.26 1 9.44 ? C2D HEM 502 A 1 
HETATM 31 C C3D HEM . . . C 3 29.955 1.608 6.303 1 9.67 ? C3D HEM 502 A 1 
HETATM 32 C C4D HEM . . . C 3 28.729 1.872 7.019 1 7.85 ? C4D HEM 502 A 1 
HETATM 33 C CMD HEM . . . C 3 30.508 0.186 4.169 1 12.54 ? CMD HEM 502 A 1 
HETATM 34 C CAD HEM . . . C 3 31.32 2.093 6.633 1 13.15 ? CAD HEM 502 A 1 
HETATM 35 C CBD HEM . . . C 3 31.638 3.402 5.98 1 18.16 ? CBD HEM 502 A 1 
HETATM 36 C CGD HEM . . . C 3 32.994 3.963 6.316 1 27.79 ? CGD HEM 502 A 1 
HETATM 37 O O1D HEM . . . C 3 33.415 4.08 7.505 1 33.51 ? O1D HEM 502 A 1 
HETATM 38 O O2D HEM . . . C 3 33.587 4.224 5.311 1 36.85 ? O2D HEM 502 A 1 
HETATM 39 N NA HEM . . . C 3 26.263 2.627 8.432 1 7.21 ? NA HEM 502 A 1 
HETATM 40 N NB HEM . . . C 3 23.848 1.578 7.397 1 6.79 ? NB HEM 502 A 1 
HETATM 41 N NC HEM . . . C 3 25.264 0.162 5.418 1 6.29 ? NC HEM 502 A 1 
HETATM 42 N ND HEM . . . C 3 27.642 1.246 6.403 1 7.48 ? ND HEM 502 A 1 
HETATM 43 FE FE HEM . . . C 3 25.764 1.407 6.934 1 6.91 ? FE HEM 502 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#