data_1MJ9
#
_model_server_result.job_id            KhYMBm4_5xay0XJ9oYJMcQ 
_model_server_result.datetime_utc      '2024-11-14 20:18:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mj9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    1MJ9 
#
_exptl.entry_id    1MJ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MJ9 
_cell.length_a            181.301 
_cell.length_b            181.301 
_cell.length_c            181.301 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MJ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        214 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
PQS hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2,3 
A,B,C,D 3 1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 90.6505 90.6505 
3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -90.6505 90.6505 0 
4 'crystal symmetry operation' 38_555 -y+1/4,-x+1/4,-z+1/4 0 -1 0 -1 0 0 0 0 -1 45.32525 45.32525 45.32525 
5 'crystal symmetry operation' 42_454 -x-1/4,z+1/4,y-1/4 -1 0 0 0 0 1 0 1 0 -45.32525 45.32525 -45.32525 
6 'crystal symmetry operation' 46_455 z-1/4,-y+3/4,x+1/4 0 0 1 0 -1 0 1 0 0 -45.32525 135.97575 45.32525 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NA NA . A NA 1 1_555 A O ALA 146 A ALA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? 
metalc ? metalc2 B NA NA . A NA 1 1_555 C S1P COA . A COA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1MJ9 
_atom_sites.fract_transf_matrix[1][1]    0.005516 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005516 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 1 1 NA NA . 
C 3 COA A 1 500 500 COA COA . 
D 4 HOH A 1 501 501 HOH WAT . 
D 4 HOH A 2 502 502 HOH WAT . 
D 4 HOH A 3 503 503 HOH WAT . 
D 4 HOH A 4 504 504 HOH WAT . 
D 4 HOH A 5 505 505 HOH WAT . 
D 4 HOH A 6 506 506 HOH WAT . 
D 4 HOH A 7 507 507 HOH WAT . 
D 4 HOH A 8 508 508 HOH WAT . 
D 4 HOH A 9 509 509 HOH WAT . 
D 4 HOH A 10 510 510 HOH WAT . 
D 4 HOH A 11 511 511 HOH WAT . 
D 4 HOH A 12 512 512 HOH WAT . 
D 4 HOH A 13 513 513 HOH WAT . 
D 4 HOH A 14 514 514 HOH WAT . 
D 4 HOH A 15 515 515 HOH WAT . 
D 4 HOH A 16 516 516 HOH WAT . 
D 4 HOH A 17 517 517 HOH WAT . 
D 4 HOH A 18 518 518 HOH WAT . 
D 4 HOH A 19 519 519 HOH WAT . 
D 4 HOH A 20 520 520 HOH WAT . 
D 4 HOH A 21 521 521 HOH WAT . 
D 4 HOH A 22 522 522 HOH WAT . 
D 4 HOH A 23 523 523 HOH WAT . 
D 4 HOH A 24 524 524 HOH WAT . 
D 4 HOH A 25 525 525 HOH WAT . 
D 4 HOH A 26 526 526 HOH WAT . 
D 4 HOH A 27 527 527 HOH WAT . 
D 4 HOH A 28 528 528 HOH WAT . 
D 4 HOH A 29 529 529 HOH WAT . 
D 4 HOH A 30 530 530 HOH WAT . 
D 4 HOH A 31 531 531 HOH WAT . 
D 4 HOH A 32 532 532 HOH WAT . 
D 4 HOH A 33 533 533 HOH WAT . 
D 4 HOH A 34 534 534 HOH WAT . 
D 4 HOH A 35 535 535 HOH WAT . 
D 4 HOH A 36 536 536 HOH WAT . 
D 4 HOH A 37 537 537 HOH WAT . 
D 4 HOH A 38 538 538 HOH WAT . 
D 4 HOH A 39 539 539 HOH WAT . 
D 4 HOH A 40 540 540 HOH WAT . 
D 4 HOH A 41 541 541 HOH WAT . 
D 4 HOH A 42 542 542 HOH WAT . 
D 4 HOH A 43 543 543 HOH WAT . 
D 4 HOH A 44 544 544 HOH WAT . 
D 4 HOH A 45 545 545 HOH WAT . 
D 4 HOH A 46 546 546 HOH WAT . 
D 4 HOH A 47 547 547 HOH WAT . 
D 4 HOH A 48 548 548 HOH WAT . 
D 4 HOH A 49 549 549 HOH WAT . 
D 4 HOH A 50 550 550 HOH WAT . 
D 4 HOH A 51 551 551 HOH WAT . 
D 4 HOH A 52 552 552 HOH WAT . 
D 4 HOH A 53 553 553 HOH WAT . 
D 4 HOH A 54 554 554 HOH WAT . 
D 4 HOH A 55 555 555 HOH WAT . 
D 4 HOH A 56 556 556 HOH WAT . 
D 4 HOH A 57 557 557 HOH WAT . 
D 4 HOH A 58 558 558 HOH WAT . 
D 4 HOH A 59 559 559 HOH WAT . 
D 4 HOH A 60 560 560 HOH WAT . 
D 4 HOH A 61 561 561 HOH WAT . 
D 4 HOH A 62 562 562 HOH WAT . 
D 4 HOH A 63 563 563 HOH WAT . 
D 4 HOH A 64 564 564 HOH WAT . 
D 4 HOH A 65 565 565 HOH WAT . 
D 4 HOH A 66 566 566 HOH WAT . 
D 4 HOH A 67 567 567 HOH WAT . 
D 4 HOH A 68 568 568 HOH WAT . 
D 4 HOH A 69 569 569 HOH WAT . 
D 4 HOH A 70 570 570 HOH WAT . 
D 4 HOH A 71 571 571 HOH WAT . 
D 4 HOH A 72 572 572 HOH WAT . 
D 4 HOH A 73 573 573 HOH WAT . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -3.403 
_atom_site.Cartn_y               86.523 
_atom_site.Cartn_z               21.313 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        47.81 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#