data_1MJ9 # _model_server_result.job_id JI2jR79VnIiOymyvf38VEA _model_server_result.datetime_utc '2024-11-14 20:32:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1MJ9 # _exptl.entry_id 1MJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MJ9 _cell.length_a 181.301 _cell.length_b 181.301 _cell.length_c 181.301 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PQS hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3 A,B,C,D 3 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 90.6505 90.6505 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -90.6505 90.6505 0 4 'crystal symmetry operation' 38_555 -y+1/4,-x+1/4,-z+1/4 0 -1 0 -1 0 0 0 0 -1 45.32525 45.32525 45.32525 5 'crystal symmetry operation' 42_454 -x-1/4,z+1/4,y-1/4 -1 0 0 0 0 1 0 1 0 -45.32525 45.32525 -45.32525 6 'crystal symmetry operation' 46_455 z-1/4,-y+3/4,x+1/4 0 0 1 0 -1 0 1 0 0 -45.32525 135.97575 45.32525 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NA NA . A NA 1 1_555 A O ALA 146 A ALA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc2 B NA NA . A NA 1 1_555 C S1P COA . A COA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1MJ9 _atom_sites.fract_transf_matrix[1][1] 0.005516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1 1 NA NA . C 3 COA A 1 500 500 COA COA . D 4 HOH A 1 501 501 HOH WAT . D 4 HOH A 2 502 502 HOH WAT . D 4 HOH A 3 503 503 HOH WAT . D 4 HOH A 4 504 504 HOH WAT . D 4 HOH A 5 505 505 HOH WAT . D 4 HOH A 6 506 506 HOH WAT . D 4 HOH A 7 507 507 HOH WAT . D 4 HOH A 8 508 508 HOH WAT . D 4 HOH A 9 509 509 HOH WAT . D 4 HOH A 10 510 510 HOH WAT . D 4 HOH A 11 511 511 HOH WAT . D 4 HOH A 12 512 512 HOH WAT . D 4 HOH A 13 513 513 HOH WAT . D 4 HOH A 14 514 514 HOH WAT . D 4 HOH A 15 515 515 HOH WAT . D 4 HOH A 16 516 516 HOH WAT . D 4 HOH A 17 517 517 HOH WAT . D 4 HOH A 18 518 518 HOH WAT . D 4 HOH A 19 519 519 HOH WAT . D 4 HOH A 20 520 520 HOH WAT . D 4 HOH A 21 521 521 HOH WAT . D 4 HOH A 22 522 522 HOH WAT . D 4 HOH A 23 523 523 HOH WAT . D 4 HOH A 24 524 524 HOH WAT . D 4 HOH A 25 525 525 HOH WAT . D 4 HOH A 26 526 526 HOH WAT . D 4 HOH A 27 527 527 HOH WAT . D 4 HOH A 28 528 528 HOH WAT . D 4 HOH A 29 529 529 HOH WAT . D 4 HOH A 30 530 530 HOH WAT . D 4 HOH A 31 531 531 HOH WAT . D 4 HOH A 32 532 532 HOH WAT . D 4 HOH A 33 533 533 HOH WAT . D 4 HOH A 34 534 534 HOH WAT . D 4 HOH A 35 535 535 HOH WAT . D 4 HOH A 36 536 536 HOH WAT . D 4 HOH A 37 537 537 HOH WAT . D 4 HOH A 38 538 538 HOH WAT . D 4 HOH A 39 539 539 HOH WAT . D 4 HOH A 40 540 540 HOH WAT . D 4 HOH A 41 541 541 HOH WAT . D 4 HOH A 42 542 542 HOH WAT . D 4 HOH A 43 543 543 HOH WAT . D 4 HOH A 44 544 544 HOH WAT . D 4 HOH A 45 545 545 HOH WAT . D 4 HOH A 46 546 546 HOH WAT . D 4 HOH A 47 547 547 HOH WAT . D 4 HOH A 48 548 548 HOH WAT . D 4 HOH A 49 549 549 HOH WAT . D 4 HOH A 50 550 550 HOH WAT . D 4 HOH A 51 551 551 HOH WAT . D 4 HOH A 52 552 552 HOH WAT . D 4 HOH A 53 553 553 HOH WAT . D 4 HOH A 54 554 554 HOH WAT . D 4 HOH A 55 555 555 HOH WAT . D 4 HOH A 56 556 556 HOH WAT . D 4 HOH A 57 557 557 HOH WAT . D 4 HOH A 58 558 558 HOH WAT . D 4 HOH A 59 559 559 HOH WAT . D 4 HOH A 60 560 560 HOH WAT . D 4 HOH A 61 561 561 HOH WAT . D 4 HOH A 62 562 562 HOH WAT . D 4 HOH A 63 563 563 HOH WAT . D 4 HOH A 64 564 564 HOH WAT . D 4 HOH A 65 565 565 HOH WAT . D 4 HOH A 66 566 566 HOH WAT . D 4 HOH A 67 567 567 HOH WAT . D 4 HOH A 68 568 568 HOH WAT . D 4 HOH A 69 569 569 HOH WAT . D 4 HOH A 70 570 570 HOH WAT . D 4 HOH A 71 571 571 HOH WAT . D 4 HOH A 72 572 572 HOH WAT . D 4 HOH A 73 573 573 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 3 19.539 91.568 19.683 1 76.91 ? N1A COA 500 A 1 HETATM 2 C C2A COA . . . C 3 19.119 90.405 19.032 1 76.78 ? C2A COA 500 A 1 HETATM 3 N N3A COA . . . C 3 17.979 89.708 19.279 1 75.84 ? N3A COA 500 A 1 HETATM 4 C C4A COA . . . C 3 17.223 90.249 20.261 1 75.5 ? C4A COA 500 A 1 HETATM 5 C C5A COA . . . C 3 17.496 91.427 21.03 1 76 ? C5A COA 500 A 1 HETATM 6 C C6A COA . . . C 3 18.777 92.139 20.695 1 76.61 ? C6A COA 500 A 1 HETATM 7 N N6A COA . . . C 3 19.16 93.214 21.3 1 77 ? N6A COA 500 A 1 HETATM 8 N N7A COA . . . C 3 16.512 91.681 21.941 1 75.16 ? N7A COA 500 A 1 HETATM 9 C C8A COA . . . C 3 15.61 90.676 21.763 1 74.73 ? C8A COA 500 A 1 HETATM 10 N N9A COA . . . C 3 15.989 89.778 20.76 1 74.48 ? N9A COA 500 A 1 HETATM 11 C C1B COA . . . C 3 15.254 88.543 20.279 1 72.94 ? C1B COA 500 A 1 HETATM 12 C C2B COA . . . C 3 15.409 87.358 21.215 1 72.72 ? C2B COA 500 A 1 HETATM 13 O O2B COA . . . C 3 16.728 86.853 21.094 1 73.88 ? O2B COA 500 A 1 HETATM 14 C C3B COA . . . C 3 14.311 86.412 20.688 1 71.35 ? C3B COA 500 A 1 HETATM 15 O O3B COA . . . C 3 14.681 85.757 19.525 1 74.68 ? O3B COA 500 A 1 HETATM 16 P P3B COA . . . C 3 14.011 84.222 19.388 1 77.85 ? P3B COA 500 A 1 HETATM 17 O O7A COA . . . C 3 14.641 83.365 20.578 1 76.89 ? O7A COA 500 A 1 HETATM 18 O O8A COA . . . C 3 14.485 83.515 18.022 1 77.11 ? O8A COA 500 A 1 HETATM 19 O O9A COA . . . C 3 12.429 84.349 19.537 1 77.8 ? O9A COA 500 A 1 HETATM 20 C C4B COA . . . C 3 13.142 87.415 20.575 1 67.87 ? C4B COA 500 A 1 HETATM 21 O O4B COA . . . C 3 13.806 88.749 20.324 1 71.04 ? O4B COA 500 A 1 HETATM 22 C C5B COA . . . C 3 12.296 87.562 21.813 1 60.44 ? C5B COA 500 A 1 HETATM 23 O O5B COA . . . C 3 11.007 88.104 21.373 1 47.53 ? O5B COA 500 A 1 HETATM 24 P P1A COA . . . C 3 10.64 89.605 21.852 1 40.51 ? P1A COA 500 A 1 HETATM 25 O O1A COA . . . C 3 11.578 90.54 21.152 1 38.86 ? O1A COA 500 A 1 HETATM 26 O O2A COA . . . C 3 10.566 89.694 23.352 1 41.35 ? O2A COA 500 A 1 HETATM 27 O O3A COA . . . C 3 9.274 89.833 21.248 1 38.99 ? O3A COA 500 A 1 HETATM 28 P P2A COA . . . C 3 8.716 90.781 20.048 1 33.97 ? P2A COA 500 A 1 HETATM 29 O O4A COA . . . C 3 9.347 90.456 18.716 1 35.67 ? O4A COA 500 A 1 HETATM 30 O O5A COA . . . C 3 8.835 92.268 20.325 1 39.39 ? O5A COA 500 A 1 HETATM 31 O O6A COA . . . C 3 7.131 90.363 20.138 1 35.9 ? O6A COA 500 A 1 HETATM 32 C CBP COA . . . C 3 5.2 89.154 19.31 1 33.27 ? CBP COA 500 A 1 HETATM 33 C CCP COA . . . C 3 6.634 89.036 19.926 1 33.18 ? CCP COA 500 A 1 HETATM 34 C CDP COA . . . C 3 4.497 87.759 19.119 1 31.82 ? CDP COA 500 A 1 HETATM 35 C CEP COA . . . C 3 4.479 89.995 20.389 1 31.98 ? CEP COA 500 A 1 HETATM 36 C CAP COA . . . C 3 5.376 89.869 17.89 1 31.31 ? CAP COA 500 A 1 HETATM 37 O OAP COA . . . C 3 6.034 88.969 16.941 1 32.57 ? OAP COA 500 A 1 HETATM 38 C C9P COA . . . C 3 4.064 90.369 17.297 1 31.93 ? C9P COA 500 A 1 HETATM 39 O O9P COA . . . C 3 3.457 91.493 17.788 1 32.96 ? O9P COA 500 A 1 HETATM 40 N N8P COA . . . C 3 3.585 89.639 16.316 1 31.93 ? N8P COA 500 A 1 HETATM 41 C C7P COA . . . C 3 2.341 89.921 15.596 1 32.25 ? C7P COA 500 A 1 HETATM 42 C C6P COA . . . C 3 1.149 89.715 16.545 1 34.16 ? C6P COA 500 A 1 HETATM 43 C C5P COA . . . C 3 1.031 88.281 17.002 1 35.09 ? C5P COA 500 A 1 HETATM 44 O O5P COA . . . C 3 1.336 87.287 16.237 1 35.13 ? O5P COA 500 A 1 HETATM 45 N N4P COA . . . C 3 0.582 88.162 18.248 1 36.59 ? N4P COA 500 A 1 HETATM 46 C C3P COA . . . C 3 0.343 86.854 19.019 1 40.88 ? C3P COA 500 A 1 HETATM 47 C C2P COA . . . C 3 -1.167 86.595 18.994 1 43.36 ? C2P COA 500 A 1 HETATM 48 S S1P COA . . . C 3 -1.91 86.346 20.672 1 52.64 ? S1P COA 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #