data_1MJA # _model_server_result.job_id Af7rshkQtd_JlzYVBPvh-g _model_server_result.datetime_utc '2024-11-14 20:20:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1MJA # _exptl.entry_id 1MJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MJA _cell.length_a 181.274 _cell.length_b 181.274 _cell.length_c 181.274 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PQS hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3 A,B,C 3 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 90.637 90.637 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -90.637 90.637 0 4 'crystal symmetry operation' 38_555 -y+1/4,-x+1/4,-z+1/4 0 -1 0 -1 0 0 0 0 -1 45.3185 45.3185 45.3185 5 'crystal symmetry operation' 42_454 -x-1/4,z+1/4,y-1/4 -1 0 0 0 0 1 0 1 0 -45.3185 45.3185 -45.3185 6 'crystal symmetry operation' 46_455 z-1/4,-y+3/4,x+1/4 0 0 1 0 -1 0 1 0 0 -45.3185 135.9555 45.3185 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 146 A ALA 303 1_555 A N SCY 147 A SCY 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SCY 147 A SCY 304 1_555 A N ILE 148 A ILE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MJA _atom_sites.fract_transf_matrix[1][1] 0.005517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 500 500 COA COA . C 3 HOH A 1 501 501 HOH WAT . C 3 HOH A 2 502 502 HOH WAT . C 3 HOH A 3 503 503 HOH WAT . C 3 HOH A 4 504 504 HOH WAT . C 3 HOH A 5 505 505 HOH WAT . C 3 HOH A 6 506 506 HOH WAT . C 3 HOH A 7 507 507 HOH WAT . C 3 HOH A 8 508 508 HOH WAT . C 3 HOH A 9 509 509 HOH WAT . C 3 HOH A 10 510 510 HOH WAT . C 3 HOH A 11 511 511 HOH WAT . C 3 HOH A 12 512 512 HOH WAT . C 3 HOH A 13 513 513 HOH WAT . C 3 HOH A 14 514 514 HOH WAT . C 3 HOH A 15 515 515 HOH WAT . C 3 HOH A 16 516 516 HOH WAT . C 3 HOH A 17 517 517 HOH WAT . C 3 HOH A 18 518 518 HOH WAT . C 3 HOH A 19 519 519 HOH WAT . C 3 HOH A 20 520 520 HOH WAT . C 3 HOH A 21 521 521 HOH WAT . C 3 HOH A 22 522 522 HOH WAT . C 3 HOH A 23 523 523 HOH WAT . C 3 HOH A 24 524 524 HOH WAT . C 3 HOH A 25 525 525 HOH WAT . C 3 HOH A 26 526 526 HOH WAT . C 3 HOH A 27 527 527 HOH WAT . C 3 HOH A 28 528 528 HOH WAT . C 3 HOH A 29 529 529 HOH WAT . C 3 HOH A 30 530 530 HOH WAT . C 3 HOH A 31 531 531 HOH WAT . C 3 HOH A 32 532 532 HOH WAT . C 3 HOH A 33 533 533 HOH WAT . C 3 HOH A 34 534 534 HOH WAT . C 3 HOH A 35 535 535 HOH WAT . C 3 HOH A 36 536 536 HOH WAT . C 3 HOH A 37 537 537 HOH WAT . C 3 HOH A 38 538 538 HOH WAT . C 3 HOH A 39 539 539 HOH WAT . C 3 HOH A 40 540 540 HOH WAT . C 3 HOH A 41 541 541 HOH WAT . C 3 HOH A 42 542 542 HOH WAT . C 3 HOH A 43 543 543 HOH WAT . C 3 HOH A 44 544 544 HOH WAT . C 3 HOH A 45 545 545 HOH WAT . C 3 HOH A 46 546 546 HOH WAT . C 3 HOH A 47 547 547 HOH WAT . C 3 HOH A 48 548 548 HOH WAT . C 3 HOH A 49 549 549 HOH WAT . C 3 HOH A 50 550 550 HOH WAT . C 3 HOH A 51 551 551 HOH WAT . C 3 HOH A 52 552 552 HOH WAT . C 3 HOH A 53 553 553 HOH WAT . C 3 HOH A 54 554 554 HOH WAT . C 3 HOH A 55 555 555 HOH WAT . C 3 HOH A 56 556 556 HOH WAT . C 3 HOH A 57 557 557 HOH WAT . C 3 HOH A 58 558 558 HOH WAT . C 3 HOH A 59 559 559 HOH WAT . C 3 HOH A 60 560 560 HOH WAT . C 3 HOH A 61 561 561 HOH WAT . C 3 HOH A 62 562 562 HOH WAT . C 3 HOH A 63 563 563 HOH WAT . C 3 HOH A 64 564 564 HOH WAT . C 3 HOH A 65 565 565 HOH WAT . C 3 HOH A 66 566 566 HOH WAT . C 3 HOH A 67 567 567 HOH WAT . C 3 HOH A 68 568 568 HOH WAT . C 3 HOH A 69 569 569 HOH WAT . C 3 HOH A 70 570 570 HOH WAT . C 3 HOH A 71 571 571 HOH WAT . C 3 HOH A 72 572 572 HOH WAT . C 3 HOH A 73 573 573 HOH WAT . C 3 HOH A 74 574 574 HOH WAT . C 3 HOH A 75 575 575 HOH WAT . C 3 HOH A 76 576 576 HOH WAT . C 3 HOH A 77 577 577 HOH WAT . C 3 HOH A 78 578 578 HOH WAT . C 3 HOH A 79 579 579 HOH WAT . C 3 HOH A 80 580 580 HOH WAT . C 3 HOH A 81 581 581 HOH WAT . C 3 HOH A 82 582 582 HOH WAT . C 3 HOH A 83 583 583 HOH WAT . C 3 HOH A 84 584 584 HOH WAT . C 3 HOH A 85 585 585 HOH WAT . C 3 HOH A 86 586 586 HOH WAT . C 3 HOH A 87 587 587 HOH WAT . C 3 HOH A 88 588 588 HOH WAT . C 3 HOH A 89 589 589 HOH WAT . C 3 HOH A 90 590 590 HOH WAT . C 3 HOH A 91 591 591 HOH WAT . C 3 HOH A 92 592 592 HOH WAT . C 3 HOH A 93 593 593 HOH WAT . C 3 HOH A 94 594 594 HOH WAT . C 3 HOH A 95 595 595 HOH WAT . C 3 HOH A 96 596 596 HOH WAT . C 3 HOH A 97 597 597 HOH WAT . C 3 HOH A 98 598 598 HOH WAT . C 3 HOH A 99 599 599 HOH WAT . C 3 HOH A 100 600 600 HOH WAT . C 3 HOH A 101 601 601 HOH WAT . C 3 HOH A 102 602 602 HOH WAT . C 3 HOH A 103 603 603 HOH WAT . C 3 HOH A 104 604 604 HOH WAT . C 3 HOH A 105 605 605 HOH WAT . C 3 HOH A 106 606 606 HOH WAT . C 3 HOH A 107 607 607 HOH WAT . C 3 HOH A 108 608 608 HOH WAT . C 3 HOH A 109 609 609 HOH WAT . C 3 HOH A 110 610 610 HOH WAT . C 3 HOH A 111 611 611 HOH WAT . C 3 HOH A 112 612 612 HOH WAT . C 3 HOH A 113 613 613 HOH WAT . C 3 HOH A 114 614 614 HOH WAT . C 3 HOH A 115 615 615 HOH WAT . C 3 HOH A 116 616 616 HOH WAT . C 3 HOH A 117 617 617 HOH WAT . C 3 HOH A 118 618 618 HOH WAT . C 3 HOH A 119 619 619 HOH WAT . C 3 HOH A 120 620 620 HOH WAT . C 3 HOH A 121 621 621 HOH WAT . C 3 HOH A 122 622 622 HOH WAT . C 3 HOH A 123 623 623 HOH WAT . C 3 HOH A 124 624 624 HOH WAT . C 3 HOH A 125 625 625 HOH WAT . C 3 HOH A 126 626 626 HOH WAT . C 3 HOH A 127 627 627 HOH WAT . C 3 HOH A 128 628 628 HOH WAT . C 3 HOH A 129 629 629 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 19.117 92.225 20.143 1 95.8 ? N1A COA 500 A 1 HETATM 2 C C2A COA . . . B 2 18.823 91.092 19.373 1 95.45 ? C2A COA 500 A 1 HETATM 3 N N3A COA . . . B 2 17.731 90.299 19.493 1 94.03 ? N3A COA 500 A 1 HETATM 4 C C4A COA . . . B 2 16.897 90.695 20.477 1 93.29 ? C4A COA 500 A 1 HETATM 5 C C5A COA . . . B 2 17.035 91.822 21.353 1 93.76 ? C5A COA 500 A 1 HETATM 6 C C6A COA . . . B 2 18.268 92.645 21.156 1 94.77 ? C6A COA 500 A 1 HETATM 7 N N6A COA . . . B 2 18.532 93.69 21.87 1 94.74 ? N6A COA 500 A 1 HETATM 8 N N7A COA . . . B 2 16.001 91.921 22.228 1 93.69 ? N7A COA 500 A 1 HETATM 9 C C8A COA . . . B 2 15.196 90.877 21.917 1 92.62 ? C8A COA 500 A 1 HETATM 10 N N9A COA . . . B 2 15.687 90.105 20.865 1 91.55 ? N9A COA 500 A 1 HETATM 11 C C1B COA . . . B 2 15.047 88.891 20.247 1 89.96 ? C1B COA 500 A 1 HETATM 12 C C2B COA . . . B 2 15.317 87.629 21.044 1 89.84 ? C2B COA 500 A 1 HETATM 13 O O2B COA . . . B 2 16.618 87.174 20.717 1 91.93 ? O2B COA 500 A 1 HETATM 14 C C3B COA . . . B 2 14.19 86.686 20.581 1 87.48 ? C3B COA 500 A 1 HETATM 15 O O3B COA . . . B 2 14.46 86.05 19.386 1 93.06 ? O3B COA 500 A 1 HETATM 16 P P3B COA . . . B 2 13.845 84.487 19.351 1 96.12 ? P3B COA 500 A 1 HETATM 17 O O7A COA . . . B 2 14.661 83.682 20.458 1 96.8 ? O7A COA 500 A 1 HETATM 18 O O8A COA . . . B 2 14.173 83.776 17.952 1 96.37 ? O8A COA 500 A 1 HETATM 19 O O9A COA . . . B 2 12.296 84.557 19.709 1 97.73 ? O9A COA 500 A 1 HETATM 20 C C4B COA . . . B 2 12.995 87.657 20.567 1 81.14 ? C4B COA 500 A 1 HETATM 21 O O4B COA . . . B 2 13.596 89.011 20.351 1 86.12 ? O4B COA 500 A 1 HETATM 22 C C5B COA . . . B 2 12.199 87.735 21.843 1 68.54 ? C5B COA 500 A 1 HETATM 23 O O5B COA . . . B 2 10.885 88.259 21.449 1 46.24 ? O5B COA 500 A 1 HETATM 24 P P1A COA . . . B 2 10.498 89.754 21.93 1 33.69 ? P1A COA 500 A 1 HETATM 25 O O1A COA . . . B 2 11.396 90.728 21.213 1 29.42 ? O1A COA 500 A 1 HETATM 26 O O2A COA . . . B 2 10.441 89.849 23.43 1 37.66 ? O2A COA 500 A 1 HETATM 27 O O3A COA . . . B 2 9.097 89.958 21.366 1 34.85 ? O3A COA 500 A 1 HETATM 28 P P2A COA . . . B 2 8.489 90.945 20.226 1 31.26 ? P2A COA 500 A 1 HETATM 29 O O4A COA . . . B 2 9.09 90.739 18.867 1 28.52 ? O4A COA 500 A 1 HETATM 30 O O5A COA . . . B 2 8.594 92.424 20.591 1 34.53 ? O5A COA 500 A 1 HETATM 31 O O6A COA . . . B 2 6.909 90.478 20.332 1 33.59 ? O6A COA 500 A 1 HETATM 32 C CBP COA . . . B 2 5 89.279 19.418 1 31.3 ? CBP COA 500 A 1 HETATM 33 C CCP COA . . . B 2 6.425 89.153 20.066 1 29.13 ? CCP COA 500 A 1 HETATM 34 C CDP COA . . . B 2 4.273 87.898 19.253 1 26.9 ? CDP COA 500 A 1 HETATM 35 C CEP COA . . . B 2 4.266 90.179 20.444 1 27.15 ? CEP COA 500 A 1 HETATM 36 C CAP COA . . . B 2 5.238 89.935 17.974 1 29.75 ? CAP COA 500 A 1 HETATM 37 O OAP COA . . . B 2 5.904 88.985 17.084 1 30.6 ? OAP COA 500 A 1 HETATM 38 C C9P COA . . . B 2 3.972 90.448 17.301 1 31.16 ? C9P COA 500 A 1 HETATM 39 O O9P COA . . . B 2 3.371 91.598 17.719 1 33.03 ? O9P COA 500 A 1 HETATM 40 N N8P COA . . . B 2 3.529 89.698 16.311 1 31.04 ? N8P COA 500 A 1 HETATM 41 C C7P COA . . . B 2 2.345 89.989 15.488 1 33.57 ? C7P COA 500 A 1 HETATM 42 C C6P COA . . . B 2 1.086 89.959 16.347 1 35.12 ? C6P COA 500 A 1 HETATM 43 C C5P COA . . . B 2 0.863 88.586 16.925 1 36.43 ? C5P COA 500 A 1 HETATM 44 O O5P COA . . . B 2 0.967 87.509 16.224 1 34.54 ? O5P COA 500 A 1 HETATM 45 N N4P COA . . . B 2 0.552 88.612 18.203 1 33.8 ? N4P COA 500 A 1 HETATM 46 C C3P COA . . . B 2 0.265 87.405 19.075 1 37.07 ? C3P COA 500 A 1 HETATM 47 C C2P COA . . . B 2 -1.169 86.994 18.779 1 39.88 ? C2P COA 500 A 1 HETATM 48 S S1P COA . . . B 2 -1.567 85.347 19.468 1 52.51 ? S1P COA 500 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #