data_1MJB # _model_server_result.job_id wmcfHoHNNXObFKC-_HWLyA _model_server_result.datetime_utc '2024-11-22 06:06:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1MJB # _exptl.entry_id 1MJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MJB _cell.length_a 181.783 _cell.length_b 181.783 _cell.length_c 181.783 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PQS hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3 A,B,C 3 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 90.8915 90.8915 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -90.8915 90.8915 0 4 'crystal symmetry operation' 38_555 -y+1/4,-x+1/4,-z+1/4 0 -1 0 -1 0 0 0 0 -1 45.44575 45.44575 45.44575 5 'crystal symmetry operation' 42_454 -x-1/4,z+1/4,y-1/4 -1 0 0 0 0 1 0 1 0 -45.44575 45.44575 -45.44575 6 'crystal symmetry operation' 46_455 z-1/4,-y+3/4,x+1/4 0 0 1 0 -1 0 1 0 0 -45.44575 136.33725 45.44575 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 146 A ALA 303 1_555 A N CSO 147 A CSO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale2 A C CSO 147 A CSO 304 1_555 A N ILE 148 A ILE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.237 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 1MJB _atom_sites.fract_transf_matrix[1][1] 0.005501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 500 500 ACO ACO . C 3 HOH A 1 501 501 HOH WAT . C 3 HOH A 2 502 502 HOH WAT . C 3 HOH A 3 503 503 HOH WAT . C 3 HOH A 4 504 504 HOH WAT . C 3 HOH A 5 505 505 HOH WAT . C 3 HOH A 6 506 506 HOH WAT . C 3 HOH A 7 507 507 HOH WAT . C 3 HOH A 8 508 508 HOH WAT . C 3 HOH A 9 509 509 HOH WAT . C 3 HOH A 10 510 510 HOH WAT . C 3 HOH A 11 511 511 HOH WAT . C 3 HOH A 12 512 512 HOH WAT . C 3 HOH A 13 513 513 HOH WAT . C 3 HOH A 14 514 514 HOH WAT . C 3 HOH A 15 515 515 HOH WAT . C 3 HOH A 16 516 516 HOH WAT . C 3 HOH A 17 517 517 HOH WAT . C 3 HOH A 18 518 518 HOH WAT . C 3 HOH A 19 519 519 HOH WAT . C 3 HOH A 20 520 520 HOH WAT . C 3 HOH A 21 521 521 HOH WAT . C 3 HOH A 22 522 522 HOH WAT . C 3 HOH A 23 523 523 HOH WAT . C 3 HOH A 24 524 524 HOH WAT . C 3 HOH A 25 525 525 HOH WAT . C 3 HOH A 26 526 526 HOH WAT . C 3 HOH A 27 527 527 HOH WAT . C 3 HOH A 28 528 528 HOH WAT . C 3 HOH A 29 529 529 HOH WAT . C 3 HOH A 30 530 530 HOH WAT . C 3 HOH A 31 531 531 HOH WAT . C 3 HOH A 32 532 532 HOH WAT . C 3 HOH A 33 533 533 HOH WAT . C 3 HOH A 34 534 534 HOH WAT . C 3 HOH A 35 535 535 HOH WAT . C 3 HOH A 36 536 536 HOH WAT . C 3 HOH A 37 537 537 HOH WAT . C 3 HOH A 38 538 538 HOH WAT . C 3 HOH A 39 539 539 HOH WAT . C 3 HOH A 40 540 540 HOH WAT . C 3 HOH A 41 541 541 HOH WAT . C 3 HOH A 42 542 542 HOH WAT . C 3 HOH A 43 543 543 HOH WAT . C 3 HOH A 44 544 544 HOH WAT . C 3 HOH A 45 545 545 HOH WAT . C 3 HOH A 46 546 546 HOH WAT . C 3 HOH A 47 547 547 HOH WAT . C 3 HOH A 48 548 548 HOH WAT . C 3 HOH A 49 549 549 HOH WAT . C 3 HOH A 50 550 550 HOH WAT . C 3 HOH A 51 551 551 HOH WAT . C 3 HOH A 52 552 552 HOH WAT . C 3 HOH A 53 553 553 HOH WAT . C 3 HOH A 54 554 554 HOH WAT . C 3 HOH A 55 555 555 HOH WAT . C 3 HOH A 56 556 556 HOH WAT . C 3 HOH A 57 557 557 HOH WAT . C 3 HOH A 58 558 558 HOH WAT . C 3 HOH A 59 559 559 HOH WAT . C 3 HOH A 60 560 560 HOH WAT . C 3 HOH A 61 561 561 HOH WAT . C 3 HOH A 62 562 562 HOH WAT . C 3 HOH A 63 563 563 HOH WAT . C 3 HOH A 64 564 564 HOH WAT . C 3 HOH A 65 565 565 HOH WAT . C 3 HOH A 66 566 566 HOH WAT . C 3 HOH A 67 567 567 HOH WAT . C 3 HOH A 68 568 568 HOH WAT . C 3 HOH A 69 569 569 HOH WAT . C 3 HOH A 70 570 570 HOH WAT . C 3 HOH A 71 571 571 HOH WAT . C 3 HOH A 72 572 572 HOH WAT . C 3 HOH A 73 573 573 HOH WAT . C 3 HOH A 74 574 574 HOH WAT . C 3 HOH A 75 575 575 HOH WAT . C 3 HOH A 76 576 576 HOH WAT . C 3 HOH A 77 577 577 HOH WAT . C 3 HOH A 78 578 578 HOH WAT . C 3 HOH A 79 579 579 HOH WAT . C 3 HOH A 80 580 580 HOH WAT . C 3 HOH A 81 581 581 HOH WAT . C 3 HOH A 82 582 582 HOH WAT . C 3 HOH A 83 583 583 HOH WAT . C 3 HOH A 84 584 584 HOH WAT . C 3 HOH A 85 585 585 HOH WAT . C 3 HOH A 86 586 586 HOH WAT . C 3 HOH A 87 587 587 HOH WAT . C 3 HOH A 88 588 588 HOH WAT . C 3 HOH A 89 589 589 HOH WAT . C 3 HOH A 90 590 590 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 19.187 92.154 19.931 1 93.8 ? N1A ACO 500 A 1 HETATM 2 C C2A ACO . . . B 2 18.894 91.022 19.16 1 95.02 ? C2A ACO 500 A 1 HETATM 3 N N3A ACO . . . B 2 17.802 90.228 19.281 1 93.24 ? N3A ACO 500 A 1 HETATM 4 C C4A ACO . . . B 2 16.967 90.624 20.266 1 91.24 ? C4A ACO 500 A 1 HETATM 5 C C5A ACO . . . B 2 17.106 91.752 21.142 1 90.56 ? C5A ACO 500 A 1 HETATM 6 C C6A ACO . . . B 2 18.339 92.575 20.945 1 91.44 ? C6A ACO 500 A 1 HETATM 7 N N6A ACO . . . B 2 18.602 93.619 21.658 1 88.74 ? N6A ACO 500 A 1 HETATM 8 N N7A ACO . . . B 2 16.071 91.85 22.017 1 89.13 ? N7A ACO 500 A 1 HETATM 9 C C8A ACO . . . B 2 15.264 90.808 21.705 1 88.9 ? C8A ACO 500 A 1 HETATM 10 N N9A ACO . . . B 2 15.756 90.035 20.652 1 90.54 ? N9A ACO 500 A 1 HETATM 11 C C1B ACO . . . B 2 15.118 88.821 20.036 1 90.72 ? C1B ACO 500 A 1 HETATM 12 C C2B ACO . . . B 2 15.389 87.558 20.832 1 92.21 ? C2B ACO 500 A 1 HETATM 13 O O2B ACO . . . B 2 16.688 87.103 20.504 1 93.27 ? O2B ACO 500 A 1 HETATM 14 C C3B ACO . . . B 2 14.26 86.615 20.369 1 91.32 ? C3B ACO 500 A 1 HETATM 15 O O3B ACO . . . B 2 14.532 85.981 19.172 1 98.49 ? O3B ACO 500 A 1 HETATM 16 P P3B ACO . . . B 2 13.917 84.421 19.141 1 102.36 ? P3B ACO 500 A 1 HETATM 17 O O7A ACO . . . B 2 14.733 83.612 20.247 1 102.32 ? O7A ACO 500 A 1 HETATM 18 O O8A ACO . . . B 2 14.243 83.705 17.738 1 102.45 ? O8A ACO 500 A 1 HETATM 19 O O9A ACO . . . B 2 12.367 84.487 19.498 1 104.19 ? O9A ACO 500 A 1 HETATM 20 C C4B ACO . . . B 2 13.066 87.585 20.355 1 84.58 ? C4B ACO 500 A 1 HETATM 21 O O4B ACO . . . B 2 13.668 88.942 20.139 1 88.38 ? O4B ACO 500 A 1 HETATM 22 C C5B ACO . . . B 2 12.272 87.665 21.632 1 71.72 ? C5B ACO 500 A 1 HETATM 23 O O5B ACO . . . B 2 10.96 88.189 21.243 1 52.07 ? O5B ACO 500 A 1 HETATM 24 P P1A ACO . . . B 2 10.563 89.692 21.721 1 40.08 ? P1A ACO 500 A 1 HETATM 25 O O1A ACO . . . B 2 11.465 90.664 21 1 33.69 ? O1A ACO 500 A 1 HETATM 26 O O2A ACO . . . B 2 10.508 89.784 23.217 1 37.86 ? O2A ACO 500 A 1 HETATM 27 O O3A ACO . . . B 2 9.178 89.882 21.155 1 35.47 ? O3A ACO 500 A 1 HETATM 28 P P2A ACO . . . B 2 8.543 90.887 20.018 1 32.69 ? P2A ACO 500 A 1 HETATM 29 O O4A ACO . . . B 2 9.168 90.678 18.649 1 35.34 ? O4A ACO 500 A 1 HETATM 30 O O5A ACO . . . B 2 8.664 92.35 20.383 1 33.92 ? O5A ACO 500 A 1 HETATM 31 O O6A ACO . . . B 2 6.983 90.414 20.124 1 29.99 ? O6A ACO 500 A 1 HETATM 32 C CBP ACO . . . B 2 5.072 89.21 19.204 1 26.09 ? CBP ACO 500 A 1 HETATM 33 C CCP ACO . . . B 2 6.494 89.086 19.856 1 26.72 ? CCP ACO 500 A 1 HETATM 34 C CDP ACO . . . B 2 4.343 87.827 19.037 1 21.65 ? CDP ACO 500 A 1 HETATM 35 C CEP ACO . . . B 2 4.335 90.108 20.233 1 22.47 ? CEP ACO 500 A 1 HETATM 36 C CAP ACO . . . B 2 5.314 89.864 17.767 1 26.83 ? CAP ACO 500 A 1 HETATM 37 O OAP ACO . . . B 2 5.967 88.911 16.873 1 29.44 ? OAP ACO 500 A 1 HETATM 38 C C9P ACO . . . B 2 4.04 90.377 17.085 1 30.04 ? C9P ACO 500 A 1 HETATM 39 O O9P ACO . . . B 2 3.443 91.53 17.501 1 33.29 ? O9P ACO 500 A 1 HETATM 40 N N8P ACO . . . B 2 3.603 89.632 16.101 1 30.83 ? N8P ACO 500 A 1 HETATM 41 C C7P ACO . . . B 2 2.411 89.922 15.276 1 36.62 ? C7P ACO 500 A 1 HETATM 42 C C6P ACO . . . B 2 1.159 89.889 16.136 1 38.83 ? C6P ACO 500 A 1 HETATM 43 C C5P ACO . . . B 2 0.935 88.522 16.71 1 40.37 ? C5P ACO 500 A 1 HETATM 44 O O5P ACO . . . B 2 1.035 87.442 16.014 1 45.07 ? O5P ACO 500 A 1 HETATM 45 N N4P ACO . . . B 2 0.622 88.546 17.991 1 37.16 ? N4P ACO 500 A 1 HETATM 46 C C3P ACO . . . B 2 0.33 87.325 18.868 1 37.99 ? C3P ACO 500 A 1 HETATM 47 C C2P ACO . . . B 2 -1.097 86.93 18.558 1 34.13 ? C2P ACO 500 A 1 HETATM 48 S S1P ACO . . . B 2 -1.912 86.198 20.036 1 35.31 ? S1P ACO 500 A 1 HETATM 49 C C ACO . . . B 2 -3.138 86.336 21.209 1 43.24 ? C ACO 500 A 1 HETATM 50 O O ACO . . . B 2 -4.495 86.727 20.611 1 40.73 ? O ACO 500 A 1 HETATM 51 C CH3 ACO . . . B 2 -2.941 86.241 22.421 1 44.44 ? CH3 ACO 500 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #