data_1MJL # _model_server_result.job_id SB6rF-qGw4PhksMU4IYR0g _model_server_result.datetime_utc '2024-10-18 14:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1MJL # _exptl.entry_id 1MJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.67 _cell.angle_gamma 90 _cell.entry_id 1MJL _cell.length_a 35.79 _cell.length_b 63.12 _cell.length_c 43.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 1MJL _atom_sites.fract_transf_matrix[1][1] 0.027941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006281 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 200 200 SAM SAM . D 2 SAM B 1 400 400 SAM SAM . E 3 HOH A 1 201 300 HOH HOH . E 3 HOH A 2 202 301 HOH HOH . E 3 HOH A 3 203 302 HOH HOH . E 3 HOH A 4 204 303 HOH HOH . E 3 HOH A 5 205 304 HOH HOH . E 3 HOH A 6 206 305 HOH HOH . E 3 HOH A 7 207 306 HOH HOH . E 3 HOH A 8 208 307 HOH HOH . E 3 HOH A 9 209 308 HOH HOH . E 3 HOH A 10 210 309 HOH HOH . E 3 HOH A 11 211 310 HOH HOH . E 3 HOH A 12 212 311 HOH HOH . E 3 HOH A 13 213 312 HOH HOH . E 3 HOH A 14 214 313 HOH HOH . E 3 HOH A 15 215 314 HOH HOH . E 3 HOH A 16 216 315 HOH HOH . E 3 HOH A 17 217 316 HOH HOH . E 3 HOH A 18 218 317 HOH HOH . E 3 HOH A 19 219 319 HOH HOH . E 3 HOH A 20 220 320 HOH HOH . E 3 HOH A 21 221 321 HOH HOH . E 3 HOH A 22 222 322 HOH HOH . E 3 HOH A 23 223 323 HOH HOH . E 3 HOH A 24 224 324 HOH HOH . E 3 HOH A 25 225 325 HOH HOH . E 3 HOH A 26 226 326 HOH HOH . E 3 HOH A 27 227 327 HOH HOH . E 3 HOH A 28 228 328 HOH HOH . E 3 HOH A 29 229 329 HOH HOH . E 3 HOH A 30 230 330 HOH HOH . E 3 HOH A 31 231 331 HOH HOH . E 3 HOH A 32 232 332 HOH HOH . E 3 HOH A 33 233 333 HOH HOH . E 3 HOH A 34 234 334 HOH HOH . E 3 HOH A 35 235 335 HOH HOH . E 3 HOH A 36 236 336 HOH HOH . E 3 HOH A 37 237 337 HOH HOH . E 3 HOH A 38 238 338 HOH HOH . E 3 HOH A 39 239 339 HOH HOH . E 3 HOH A 40 240 340 HOH HOH . E 3 HOH A 41 241 341 HOH HOH . E 3 HOH A 42 242 342 HOH HOH . E 3 HOH A 43 243 544 HOH HOH . F 3 HOH B 1 401 318 HOH HOH . F 3 HOH B 2 402 500 HOH HOH . F 3 HOH B 3 403 501 HOH HOH . F 3 HOH B 4 404 502 HOH HOH . F 3 HOH B 5 405 503 HOH HOH . F 3 HOH B 6 406 504 HOH HOH . F 3 HOH B 7 407 505 HOH HOH . F 3 HOH B 8 408 506 HOH HOH . F 3 HOH B 9 409 507 HOH HOH . F 3 HOH B 10 410 508 HOH HOH . F 3 HOH B 11 411 509 HOH HOH . F 3 HOH B 12 412 510 HOH HOH . F 3 HOH B 13 413 511 HOH HOH . F 3 HOH B 14 414 512 HOH HOH . F 3 HOH B 15 415 513 HOH HOH . F 3 HOH B 16 416 514 HOH HOH . F 3 HOH B 17 417 515 HOH HOH . F 3 HOH B 18 418 516 HOH HOH . F 3 HOH B 19 419 517 HOH HOH . F 3 HOH B 20 420 518 HOH HOH . F 3 HOH B 21 421 519 HOH HOH . F 3 HOH B 22 422 520 HOH HOH . F 3 HOH B 23 423 521 HOH HOH . F 3 HOH B 24 424 522 HOH HOH . F 3 HOH B 25 425 523 HOH HOH . F 3 HOH B 26 426 524 HOH HOH . F 3 HOH B 27 427 525 HOH HOH . F 3 HOH B 28 428 526 HOH HOH . F 3 HOH B 29 429 527 HOH HOH . F 3 HOH B 30 430 528 HOH HOH . F 3 HOH B 31 431 529 HOH HOH . F 3 HOH B 32 432 530 HOH HOH . F 3 HOH B 33 433 531 HOH HOH . F 3 HOH B 34 434 532 HOH HOH . F 3 HOH B 35 435 533 HOH HOH . F 3 HOH B 36 436 534 HOH HOH . F 3 HOH B 37 437 535 HOH HOH . F 3 HOH B 38 438 536 HOH HOH . F 3 HOH B 39 439 537 HOH HOH . F 3 HOH B 40 440 538 HOH HOH . F 3 HOH B 41 441 539 HOH HOH . F 3 HOH B 42 442 540 HOH HOH . F 3 HOH B 43 443 541 HOH HOH . F 3 HOH B 44 444 542 HOH HOH . F 3 HOH B 45 445 543 HOH HOH . F 3 HOH B 46 446 545 HOH HOH . F 3 HOH B 47 447 546 HOH HOH . F 3 HOH B 48 448 547 HOH HOH . F 3 HOH B 49 449 548 HOH HOH . F 3 HOH B 50 450 549 HOH HOH . F 3 HOH B 51 451 550 HOH HOH . F 3 HOH B 52 452 551 HOH HOH . F 3 HOH B 53 453 552 HOH HOH . F 3 HOH B 54 454 553 HOH HOH . F 3 HOH B 55 455 554 HOH HOH . F 3 HOH B 56 456 555 HOH HOH . F 3 HOH B 57 457 556 HOH HOH . F 3 HOH B 58 458 557 HOH HOH . F 3 HOH B 59 459 558 HOH HOH . F 3 HOH B 60 460 559 HOH HOH . F 3 HOH B 61 461 560 HOH HOH . F 3 HOH B 62 462 561 HOH HOH . F 3 HOH B 63 463 562 HOH HOH . F 3 HOH B 64 464 563 HOH HOH . F 3 HOH B 65 465 564 HOH HOH . F 3 HOH B 66 466 565 HOH HOH . F 3 HOH B 67 467 566 HOH HOH . F 3 HOH B 68 468 567 HOH HOH . F 3 HOH B 69 469 568 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 2 -4.381 14.624 28.306 1 47.91 ? N SAM 400 B 1 HETATM 2 C CA SAM . . . D 2 -3.592 15.947 28.316 1 48.56 ? CA SAM 400 B 1 HETATM 3 C C SAM . . . D 2 -3.955 16.781 29.606 1 49.1 ? C SAM 400 B 1 HETATM 4 O O SAM . . . D 2 -5.084 16.589 30.14 1 49.62 ? O SAM 400 B 1 HETATM 5 O OXT SAM . . . D 2 -3.094 17.605 30.051 1 49.57 ? OXT SAM 400 B 1 HETATM 6 C CB SAM . . . D 2 -3.779 16.817 27.031 1 48.41 ? CB SAM 400 B 1 HETATM 7 C CG SAM . . . D 2 -3 18.17 27.072 1 48.16 ? CG SAM 400 B 1 HETATM 8 S SD SAM . . . D 2 -1.343 17.99 27.878 1 48.05 ? SD SAM 400 B 1 HETATM 9 C CE SAM . . . D 2 -0.983 19.682 28.232 1 48.25 ? CE SAM 400 B 1 HETATM 10 C C5' SAM . . . D 2 -0.398 17.593 26.348 1 46.13 ? C5' SAM 400 B 1 HETATM 11 C C4' SAM . . . D 2 1.108 17.763 26.632 1 44.57 ? C4' SAM 400 B 1 HETATM 12 O O4' SAM . . . D 2 1.459 16.974 27.835 1 43.69 ? O4' SAM 400 B 1 HETATM 13 C C3' SAM . . . D 2 2.205 17.417 25.568 1 43.79 ? C3' SAM 400 B 1 HETATM 14 O O3' SAM . . . D 2 2.52 18.555 24.81 1 43.61 ? O3' SAM 400 B 1 HETATM 15 C C2' SAM . . . D 2 3.437 16.873 26.412 1 43.39 ? C2' SAM 400 B 1 HETATM 16 O O2' SAM . . . D 2 4.626 17.563 26.205 1 43.13 ? O2' SAM 400 B 1 HETATM 17 C C1' SAM . . . D 2 2.904 16.831 27.866 1 42.35 ? C1' SAM 400 B 1 HETATM 18 N N9 SAM . . . D 2 3.223 15.564 28.518 1 40.75 ? N9 SAM 400 B 1 HETATM 19 C C8 SAM . . . D 2 3.703 15.504 29.857 1 39.76 ? C8 SAM 400 B 1 HETATM 20 N N7 SAM . . . D 2 3.996 14.245 30.146 1 38.99 ? N7 SAM 400 B 1 HETATM 21 C C5 SAM . . . D 2 3.606 13.463 29.021 1 38.14 ? C5 SAM 400 B 1 HETATM 22 C C6 SAM . . . D 2 3.53 12.074 28.829 1 36.71 ? C6 SAM 400 B 1 HETATM 23 N N6 SAM . . . D 2 3.896 11.24 29.844 1 37.06 ? N6 SAM 400 B 1 HETATM 24 N N1 SAM . . . D 2 3.116 11.607 27.663 1 35.99 ? N1 SAM 400 B 1 HETATM 25 C C2 SAM . . . D 2 2.745 12.464 26.633 1 36.35 ? C2 SAM 400 B 1 HETATM 26 N N3 SAM . . . D 2 2.984 13.796 26.73 1 37.52 ? N3 SAM 400 B 1 HETATM 27 C C4 SAM . . . D 2 3.248 14.222 27.972 1 39.13 ? C4 SAM 400 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #