data_1MK5 # _model_server_result.job_id iZ10_NrM5tnh18Ey533KAA _model_server_result.datetime_utc '2024-11-16 10:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":5100}' # _entry.id 1MK5 # _exptl.entry_id 1MK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MK5 _cell.length_a 46.305 _cell.length_b 93.414 _cell.length_c 103.931 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 46.305 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 1MK5 _atom_sites.fract_transf_matrix[1][1] 0.021596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTN A 1 5100 5100 BTN BTN . D 2 BTN B 1 5200 5200 BTN BTN . E 3 HOH A 1 6006 6006 HOH HOH . E 3 HOH A 2 6007 6007 HOH HOH . E 3 HOH A 3 6008 6008 HOH HOH . E 3 HOH A 4 6009 6009 HOH HOH . E 3 HOH A 5 6011 6011 HOH HOH . E 3 HOH A 6 6013 6013 HOH HOH . E 3 HOH A 7 6015 6015 HOH HOH . E 3 HOH A 8 6016 6016 HOH HOH . E 3 HOH A 9 6019 6019 HOH HOH . E 3 HOH A 10 6020 6020 HOH HOH . E 3 HOH A 11 6025 6025 HOH HOH . E 3 HOH A 12 6029 6029 HOH HOH . E 3 HOH A 13 6031 6031 HOH HOH . E 3 HOH A 14 6032 6032 HOH HOH . E 3 HOH A 15 6033 6033 HOH HOH . E 3 HOH A 16 6034 6034 HOH HOH . E 3 HOH A 17 6035 6035 HOH HOH . E 3 HOH A 18 6039 6039 HOH HOH . E 3 HOH A 19 6041 6041 HOH HOH . E 3 HOH A 20 6042 6042 HOH HOH . E 3 HOH A 21 6043 6043 HOH HOH . E 3 HOH A 22 6045 6045 HOH HOH . E 3 HOH A 23 6047 6047 HOH HOH . E 3 HOH A 24 6050 6050 HOH HOH . E 3 HOH A 25 6051 6051 HOH HOH . E 3 HOH A 26 6052 6052 HOH HOH . E 3 HOH A 27 6053 6053 HOH HOH . E 3 HOH A 28 6054 6054 HOH HOH . E 3 HOH A 29 6055 6055 HOH HOH . E 3 HOH A 30 6057 6057 HOH HOH . E 3 HOH A 31 6059 6059 HOH HOH . E 3 HOH A 32 6062 6062 HOH HOH . E 3 HOH A 33 6065 6065 HOH HOH . E 3 HOH A 34 6066 6066 HOH HOH . E 3 HOH A 35 6069 6069 HOH HOH . E 3 HOH A 36 6070 6070 HOH HOH . E 3 HOH A 37 6074 6074 HOH HOH . E 3 HOH A 38 6077 6077 HOH HOH . E 3 HOH A 39 6079 6079 HOH HOH . E 3 HOH A 40 6080 6080 HOH HOH . E 3 HOH A 41 6082 6082 HOH HOH . E 3 HOH A 42 6083 6083 HOH HOH . E 3 HOH A 43 6085 6085 HOH HOH . E 3 HOH A 44 6086 6086 HOH HOH . E 3 HOH A 45 6087 6087 HOH HOH . E 3 HOH A 46 6094 6094 HOH HOH . E 3 HOH A 47 6095 6095 HOH HOH . E 3 HOH A 48 6096 6096 HOH HOH . E 3 HOH A 49 6097 6097 HOH HOH . E 3 HOH A 50 6099 6099 HOH HOH . E 3 HOH A 51 6100 6100 HOH HOH . E 3 HOH A 52 6110 6110 HOH HOH . E 3 HOH A 53 6116 6116 HOH HOH . E 3 HOH A 54 6117 6117 HOH HOH . E 3 HOH A 55 6118 6118 HOH HOH . E 3 HOH A 56 6119 6119 HOH HOH . E 3 HOH A 57 6120 6120 HOH HOH . E 3 HOH A 58 6121 6121 HOH HOH . E 3 HOH A 59 6122 6122 HOH HOH . E 3 HOH A 60 6125 6125 HOH HOH . E 3 HOH A 61 6126 6126 HOH HOH . E 3 HOH A 62 6127 6127 HOH HOH . E 3 HOH A 63 6129 6129 HOH HOH . E 3 HOH A 64 6130 6130 HOH HOH . E 3 HOH A 65 6133 6133 HOH HOH . E 3 HOH A 66 6134 6134 HOH HOH . E 3 HOH A 67 6136 6136 HOH HOH . E 3 HOH A 68 6139 6139 HOH HOH . E 3 HOH A 69 6140 6140 HOH HOH . E 3 HOH A 70 6142 6142 HOH HOH . E 3 HOH A 71 6145 6145 HOH HOH . E 3 HOH A 72 6148 6148 HOH HOH . E 3 HOH A 73 6150 6150 HOH HOH . E 3 HOH A 74 6151 6151 HOH HOH . E 3 HOH A 75 6152 6152 HOH HOH . E 3 HOH A 76 6154 6154 HOH HOH . E 3 HOH A 77 6155 6155 HOH HOH . E 3 HOH A 78 6156 6156 HOH HOH . E 3 HOH A 79 6157 6157 HOH HOH . E 3 HOH A 80 6160 6160 HOH HOH . E 3 HOH A 81 6161 6161 HOH HOH . E 3 HOH A 82 6163 6163 HOH HOH . E 3 HOH A 83 6165 6165 HOH HOH . E 3 HOH A 84 6167 6167 HOH HOH . E 3 HOH A 85 6168 6168 HOH HOH . E 3 HOH A 86 6169 6169 HOH HOH . E 3 HOH A 87 6171 6171 HOH HOH . E 3 HOH A 88 6175 6175 HOH HOH . E 3 HOH A 89 6177 6177 HOH HOH . E 3 HOH A 90 6178 6178 HOH HOH . E 3 HOH A 91 6181 6181 HOH HOH . E 3 HOH A 92 6188 6188 HOH HOH . E 3 HOH A 93 6189 6189 HOH HOH . E 3 HOH A 94 6190 6190 HOH HOH . E 3 HOH A 95 6195 6195 HOH HOH . E 3 HOH A 96 6196 6196 HOH HOH . E 3 HOH A 97 6197 6197 HOH HOH . E 3 HOH A 98 6206 6206 HOH HOH . E 3 HOH A 99 6208 6208 HOH HOH . E 3 HOH A 100 6210 6210 HOH HOH . E 3 HOH A 101 6211 6211 HOH HOH . E 3 HOH A 102 6212 6212 HOH HOH . E 3 HOH A 103 6214 6214 HOH HOH . E 3 HOH A 104 6215 6215 HOH HOH . E 3 HOH A 105 6216 6216 HOH HOH . E 3 HOH A 106 6219 6219 HOH HOH . E 3 HOH A 107 6220 6220 HOH HOH . E 3 HOH A 108 6221 6221 HOH HOH . E 3 HOH A 109 6223 6223 HOH HOH . E 3 HOH A 110 6224 6224 HOH HOH . E 3 HOH A 111 6225 6225 HOH HOH . E 3 HOH A 112 6227 6227 HOH HOH . E 3 HOH A 113 6228 6228 HOH HOH . E 3 HOH A 114 6229 6229 HOH HOH . E 3 HOH A 115 6233 6233 HOH HOH . E 3 HOH A 116 6234 6234 HOH HOH . E 3 HOH A 117 6236 6236 HOH HOH . E 3 HOH A 118 6239 6239 HOH HOH . F 3 HOH B 1 6001 6001 HOH HOH . F 3 HOH B 2 6002 6002 HOH HOH . F 3 HOH B 3 6003 6003 HOH HOH . F 3 HOH B 4 6004 6004 HOH HOH . F 3 HOH B 5 6005 6005 HOH HOH . F 3 HOH B 6 6010 6010 HOH HOH . F 3 HOH B 7 6012 6012 HOH HOH . F 3 HOH B 8 6014 6014 HOH HOH . F 3 HOH B 9 6017 6017 HOH HOH . F 3 HOH B 10 6018 6018 HOH HOH . F 3 HOH B 11 6021 6021 HOH HOH . F 3 HOH B 12 6022 6022 HOH HOH . F 3 HOH B 13 6023 6023 HOH HOH . F 3 HOH B 14 6024 6024 HOH HOH . F 3 HOH B 15 6026 6026 HOH HOH . F 3 HOH B 16 6027 6027 HOH HOH . F 3 HOH B 17 6028 6028 HOH HOH . F 3 HOH B 18 6030 6030 HOH HOH . F 3 HOH B 19 6036 6036 HOH HOH . F 3 HOH B 20 6037 6037 HOH HOH . F 3 HOH B 21 6038 6038 HOH HOH . F 3 HOH B 22 6040 6040 HOH HOH . F 3 HOH B 23 6044 6044 HOH HOH . F 3 HOH B 24 6046 6046 HOH HOH . F 3 HOH B 25 6048 6048 HOH HOH . F 3 HOH B 26 6049 6049 HOH HOH . F 3 HOH B 27 6056 6056 HOH HOH . F 3 HOH B 28 6058 6058 HOH HOH . F 3 HOH B 29 6060 6060 HOH HOH . F 3 HOH B 30 6061 6061 HOH HOH . F 3 HOH B 31 6063 6063 HOH HOH . F 3 HOH B 32 6064 6064 HOH HOH . F 3 HOH B 33 6067 6067 HOH HOH . F 3 HOH B 34 6068 6068 HOH HOH . F 3 HOH B 35 6071 6071 HOH HOH . F 3 HOH B 36 6072 6072 HOH HOH . F 3 HOH B 37 6073 6073 HOH HOH . F 3 HOH B 38 6075 6075 HOH HOH . F 3 HOH B 39 6076 6076 HOH HOH . F 3 HOH B 40 6078 6078 HOH HOH . F 3 HOH B 41 6081 6081 HOH HOH . F 3 HOH B 42 6084 6084 HOH HOH . F 3 HOH B 43 6088 6088 HOH HOH . F 3 HOH B 44 6089 6089 HOH HOH . F 3 HOH B 45 6090 6090 HOH HOH . F 3 HOH B 46 6091 6091 HOH HOH . F 3 HOH B 47 6092 6092 HOH HOH . F 3 HOH B 48 6093 6093 HOH HOH . F 3 HOH B 49 6098 6098 HOH HOH . F 3 HOH B 50 6101 6101 HOH HOH . F 3 HOH B 51 6102 6102 HOH HOH . F 3 HOH B 52 6103 6103 HOH HOH . F 3 HOH B 53 6104 6104 HOH HOH . F 3 HOH B 54 6105 6105 HOH HOH . F 3 HOH B 55 6106 6106 HOH HOH . F 3 HOH B 56 6107 6107 HOH HOH . F 3 HOH B 57 6108 6108 HOH HOH . F 3 HOH B 58 6109 6109 HOH HOH . F 3 HOH B 59 6111 6111 HOH HOH . F 3 HOH B 60 6112 6112 HOH HOH . F 3 HOH B 61 6113 6113 HOH HOH . F 3 HOH B 62 6114 6114 HOH HOH . F 3 HOH B 63 6115 6115 HOH HOH . F 3 HOH B 64 6123 6123 HOH HOH . F 3 HOH B 65 6124 6124 HOH HOH . F 3 HOH B 66 6128 6128 HOH HOH . F 3 HOH B 67 6131 6131 HOH HOH . F 3 HOH B 68 6132 6132 HOH HOH . F 3 HOH B 69 6135 6135 HOH HOH . F 3 HOH B 70 6137 6137 HOH HOH . F 3 HOH B 71 6138 6138 HOH HOH . F 3 HOH B 72 6141 6141 HOH HOH . F 3 HOH B 73 6143 6143 HOH HOH . F 3 HOH B 74 6144 6144 HOH HOH . F 3 HOH B 75 6146 6146 HOH HOH . F 3 HOH B 76 6147 6147 HOH HOH . F 3 HOH B 77 6149 6149 HOH HOH . F 3 HOH B 78 6153 6153 HOH HOH . F 3 HOH B 79 6158 6158 HOH HOH . F 3 HOH B 80 6159 6159 HOH HOH . F 3 HOH B 81 6162 6162 HOH HOH . F 3 HOH B 82 6164 6164 HOH HOH . F 3 HOH B 83 6166 6166 HOH HOH . F 3 HOH B 84 6170 6170 HOH HOH . F 3 HOH B 85 6172 6172 HOH HOH . F 3 HOH B 86 6173 6173 HOH HOH . F 3 HOH B 87 6174 6174 HOH HOH . F 3 HOH B 88 6176 6176 HOH HOH . F 3 HOH B 89 6179 6179 HOH HOH . F 3 HOH B 90 6180 6180 HOH HOH . F 3 HOH B 91 6182 6182 HOH HOH . F 3 HOH B 92 6183 6183 HOH HOH . F 3 HOH B 93 6184 6184 HOH HOH . F 3 HOH B 94 6185 6185 HOH HOH . F 3 HOH B 95 6186 6186 HOH HOH . F 3 HOH B 96 6187 6187 HOH HOH . F 3 HOH B 97 6191 6191 HOH HOH . F 3 HOH B 98 6192 6192 HOH HOH . F 3 HOH B 99 6193 6193 HOH HOH . F 3 HOH B 100 6194 6194 HOH HOH . F 3 HOH B 101 6198 6198 HOH HOH . F 3 HOH B 102 6199 6199 HOH HOH . F 3 HOH B 103 6200 6200 HOH HOH . F 3 HOH B 104 6201 6201 HOH HOH . F 3 HOH B 105 6202 6202 HOH HOH . F 3 HOH B 106 6203 6203 HOH HOH . F 3 HOH B 107 6204 6204 HOH HOH . F 3 HOH B 108 6205 6205 HOH HOH . F 3 HOH B 109 6207 6207 HOH HOH . F 3 HOH B 110 6209 6209 HOH HOH . F 3 HOH B 111 6213 6213 HOH HOH . F 3 HOH B 112 6217 6217 HOH HOH . F 3 HOH B 113 6218 6218 HOH HOH . F 3 HOH B 114 6222 6222 HOH HOH . F 3 HOH B 115 6226 6226 HOH HOH . F 3 HOH B 116 6230 6230 HOH HOH . F 3 HOH B 117 6231 6231 HOH HOH . F 3 HOH B 118 6232 6232 HOH HOH . F 3 HOH B 119 6235 6235 HOH HOH . F 3 HOH B 120 6237 6237 HOH HOH . F 3 HOH B 121 6238 6238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . C 2 32.692 18.083 13.988 1 10.37 ? C11 BTN 5100 A 1 HETATM 2 O O11 BTN . . . C 2 33.58 17.37 13.453 1 10.6 ? O11 BTN 5100 A 1 HETATM 3 O O12 BTN . . . C 2 32.62 19.328 13.775 1 11.25 ? O12 BTN 5100 A 1 HETATM 4 C C10 BTN . . . C 2 31.715 17.459 14.91 1 9.62 ? C10 BTN 5100 A 1 HETATM 5 C C9 BTN . . . C 2 31.308 16.037 14.525 1 9.96 ? C9 BTN 5100 A 1 HETATM 6 C C8 BTN . . . C 2 30.521 16.039 13.193 1 8.97 ? C8 BTN 5100 A 1 HETATM 7 C C7 BTN . . . C 2 30.101 14.598 12.8 1 7.85 ? C7 BTN 5100 A 1 HETATM 8 C C2 BTN . . . C 2 29.3 14.547 11.505 1 9.25 ? C2 BTN 5100 A 1 HETATM 9 S S1 BTN . . . C 2 27.589 15.197 11.636 1 9.67 ? S1 BTN 5100 A 1 HETATM 10 C C6 BTN . . . C 2 27.249 14.559 9.982 1 8.53 ? C6 BTN 5100 A 1 HETATM 11 C C5 BTN . . . C 2 27.873 13.167 9.931 1 8.74 ? C5 BTN 5100 A 1 HETATM 12 N N1 BTN . . . C 2 27.027 12.12 10.472 1 9.35 ? N1 BTN 5100 A 1 HETATM 13 C C3 BTN . . . C 2 27.551 11.53 11.563 1 9.35 ? C3 BTN 5100 A 1 HETATM 14 O O3 BTN . . . C 2 26.987 10.626 12.217 1 10.11 ? O3 BTN 5100 A 1 HETATM 15 N N2 BTN . . . C 2 28.739 12.107 11.832 1 8.85 ? N2 BTN 5100 A 1 HETATM 16 C C4 BTN . . . C 2 29.095 13.155 10.878 1 8.54 ? C4 BTN 5100 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #