data_1MKM # _model_server_result.job_id aaiUVPxYHfEuYoy0BmmbYQ _model_server_result.datetime_utc '2025-01-15 06:56:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 1MKM # _exptl.entry_id 1MKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.51 _cell.angle_gamma 90 _cell.entry_id 1MKM _cell.length_a 115.229 _cell.length_b 61.076 _cell.length_c 95.911 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 81.624581 0 89.831303 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 199 A CYS 196 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc2 B SG CYS 199 B CYS 196 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 1MKM _atom_sites.fract_transf_matrix[1][1] 0.008678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003246 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 402 402 ZN ZN . D 3 FMT A 1 301 301 FMT FMT . E 2 ZN B 1 401 401 ZN ZN . F 4 HOH A 1 403 1 HOH HOH . F 4 HOH A 2 404 3 HOH HOH . F 4 HOH A 3 405 7 HOH HOH . F 4 HOH A 4 406 9 HOH HOH . F 4 HOH A 5 407 10 HOH HOH . F 4 HOH A 6 408 11 HOH HOH . F 4 HOH A 7 409 13 HOH HOH . F 4 HOH A 8 410 16 HOH HOH . F 4 HOH A 9 411 20 HOH HOH . F 4 HOH A 10 412 23 HOH HOH . F 4 HOH A 11 413 24 HOH HOH . F 4 HOH A 12 414 25 HOH HOH . F 4 HOH A 13 415 26 HOH HOH . F 4 HOH A 14 416 27 HOH HOH . F 4 HOH A 15 417 28 HOH HOH . F 4 HOH A 16 418 29 HOH HOH . F 4 HOH A 17 419 30 HOH HOH . F 4 HOH A 18 420 32 HOH HOH . F 4 HOH A 19 421 35 HOH HOH . F 4 HOH A 20 422 36 HOH HOH . F 4 HOH A 21 423 37 HOH HOH . F 4 HOH A 22 424 38 HOH HOH . F 4 HOH A 23 425 39 HOH HOH . F 4 HOH A 24 426 40 HOH HOH . F 4 HOH A 25 427 41 HOH HOH . F 4 HOH A 26 428 42 HOH HOH . F 4 HOH A 27 429 43 HOH HOH . F 4 HOH A 28 430 46 HOH HOH . F 4 HOH A 29 431 47 HOH HOH . F 4 HOH A 30 432 48 HOH HOH . F 4 HOH A 31 433 49 HOH HOH . F 4 HOH A 32 434 50 HOH HOH . F 4 HOH A 33 435 51 HOH HOH . F 4 HOH A 34 436 52 HOH HOH . F 4 HOH A 35 437 53 HOH HOH . F 4 HOH A 36 438 54 HOH HOH . F 4 HOH A 37 439 68 HOH HOH . F 4 HOH A 38 440 69 HOH HOH . F 4 HOH A 39 441 74 HOH HOH . F 4 HOH A 40 442 75 HOH HOH . F 4 HOH A 41 443 76 HOH HOH . F 4 HOH A 42 444 77 HOH HOH . F 4 HOH A 43 445 78 HOH HOH . F 4 HOH A 44 446 80 HOH HOH . F 4 HOH A 45 447 81 HOH HOH . F 4 HOH A 46 448 82 HOH HOH . F 4 HOH A 47 449 83 HOH HOH . F 4 HOH A 48 450 84 HOH HOH . F 4 HOH A 49 451 85 HOH HOH . F 4 HOH A 50 452 86 HOH HOH . F 4 HOH A 51 453 87 HOH HOH . F 4 HOH A 52 454 88 HOH HOH . F 4 HOH A 53 455 89 HOH HOH . F 4 HOH A 54 456 90 HOH HOH . F 4 HOH A 55 457 91 HOH HOH . F 4 HOH A 56 458 93 HOH HOH . F 4 HOH A 57 459 97 HOH HOH . F 4 HOH A 58 460 102 HOH HOH . F 4 HOH A 59 461 107 HOH HOH . F 4 HOH A 60 462 108 HOH HOH . F 4 HOH A 61 463 111 HOH HOH . G 4 HOH B 1 402 2 HOH HOH . G 4 HOH B 2 403 4 HOH HOH . G 4 HOH B 3 404 5 HOH HOH . G 4 HOH B 4 405 6 HOH HOH . G 4 HOH B 5 406 8 HOH HOH . G 4 HOH B 6 407 12 HOH HOH . G 4 HOH B 7 408 14 HOH HOH . G 4 HOH B 8 409 15 HOH HOH . G 4 HOH B 9 410 17 HOH HOH . G 4 HOH B 10 411 18 HOH HOH . G 4 HOH B 11 412 19 HOH HOH . G 4 HOH B 12 413 21 HOH HOH . G 4 HOH B 13 414 22 HOH HOH . G 4 HOH B 14 415 31 HOH HOH . G 4 HOH B 15 416 33 HOH HOH . G 4 HOH B 16 417 34 HOH HOH . G 4 HOH B 17 418 44 HOH HOH . G 4 HOH B 18 419 45 HOH HOH . G 4 HOH B 19 420 55 HOH HOH . G 4 HOH B 20 421 56 HOH HOH . G 4 HOH B 21 422 57 HOH HOH . G 4 HOH B 22 423 58 HOH HOH . G 4 HOH B 23 424 59 HOH HOH . G 4 HOH B 24 425 60 HOH HOH . G 4 HOH B 25 426 61 HOH HOH . G 4 HOH B 26 427 62 HOH HOH . G 4 HOH B 27 428 63 HOH HOH . G 4 HOH B 28 429 64 HOH HOH . G 4 HOH B 29 430 65 HOH HOH . G 4 HOH B 30 431 66 HOH HOH . G 4 HOH B 31 432 67 HOH HOH . G 4 HOH B 32 433 70 HOH HOH . G 4 HOH B 33 434 71 HOH HOH . G 4 HOH B 34 435 72 HOH HOH . G 4 HOH B 35 436 73 HOH HOH . G 4 HOH B 36 437 79 HOH HOH . G 4 HOH B 37 438 92 HOH HOH . G 4 HOH B 38 439 94 HOH HOH . G 4 HOH B 39 440 95 HOH HOH . G 4 HOH B 40 441 96 HOH HOH . G 4 HOH B 41 442 98 HOH HOH . G 4 HOH B 42 443 99 HOH HOH . G 4 HOH B 43 444 100 HOH HOH . G 4 HOH B 44 445 101 HOH HOH . G 4 HOH B 45 446 103 HOH HOH . G 4 HOH B 46 447 104 HOH HOH . G 4 HOH B 47 448 105 HOH HOH . G 4 HOH B 48 449 106 HOH HOH . G 4 HOH B 49 450 109 HOH HOH . G 4 HOH B 50 451 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 3 34.611 -10.107 66.504 1 65.13 ? C FMT 301 A 1 HETATM 2 O O1 FMT . . . D 3 34.107 -11.248 66.582 1 56.71 ? O1 FMT 301 A 1 HETATM 3 O O2 FMT . . . D 3 34.169 -9.219 65.744 1 55.27 ? O2 FMT 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #