data_1MKM
#
_model_server_result.job_id            KW_gyHkPjC_KjW0KhpJgLQ 
_model_server_result.datetime_utc      '2024-11-22 16:51:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mkm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    1MKM 
#
_exptl.entry_id    1MKM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.51 
_cell.angle_gamma         90 
_cell.entry_id            1MKM 
_cell.length_a            115.229 
_cell.length_b            61.076 
_cell.length_c            95.911 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MKM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 81.624581 0 89.831303 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 199 A CYS 196 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc2 B SG CYS 199 B CYS 196 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1MKM 
_atom_sites.fract_transf_matrix[1][1]    0.008678 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003246 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016373 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 402 402 ZN ZN . 
D 3 FMT A 1 301 301 FMT FMT . 
E 2 ZN B 1 401 401 ZN ZN . 
F 4 HOH A 1 403 1 HOH HOH . 
F 4 HOH A 2 404 3 HOH HOH . 
F 4 HOH A 3 405 7 HOH HOH . 
F 4 HOH A 4 406 9 HOH HOH . 
F 4 HOH A 5 407 10 HOH HOH . 
F 4 HOH A 6 408 11 HOH HOH . 
F 4 HOH A 7 409 13 HOH HOH . 
F 4 HOH A 8 410 16 HOH HOH . 
F 4 HOH A 9 411 20 HOH HOH . 
F 4 HOH A 10 412 23 HOH HOH . 
F 4 HOH A 11 413 24 HOH HOH . 
F 4 HOH A 12 414 25 HOH HOH . 
F 4 HOH A 13 415 26 HOH HOH . 
F 4 HOH A 14 416 27 HOH HOH . 
F 4 HOH A 15 417 28 HOH HOH . 
F 4 HOH A 16 418 29 HOH HOH . 
F 4 HOH A 17 419 30 HOH HOH . 
F 4 HOH A 18 420 32 HOH HOH . 
F 4 HOH A 19 421 35 HOH HOH . 
F 4 HOH A 20 422 36 HOH HOH . 
F 4 HOH A 21 423 37 HOH HOH . 
F 4 HOH A 22 424 38 HOH HOH . 
F 4 HOH A 23 425 39 HOH HOH . 
F 4 HOH A 24 426 40 HOH HOH . 
F 4 HOH A 25 427 41 HOH HOH . 
F 4 HOH A 26 428 42 HOH HOH . 
F 4 HOH A 27 429 43 HOH HOH . 
F 4 HOH A 28 430 46 HOH HOH . 
F 4 HOH A 29 431 47 HOH HOH . 
F 4 HOH A 30 432 48 HOH HOH . 
F 4 HOH A 31 433 49 HOH HOH . 
F 4 HOH A 32 434 50 HOH HOH . 
F 4 HOH A 33 435 51 HOH HOH . 
F 4 HOH A 34 436 52 HOH HOH . 
F 4 HOH A 35 437 53 HOH HOH . 
F 4 HOH A 36 438 54 HOH HOH . 
F 4 HOH A 37 439 68 HOH HOH . 
F 4 HOH A 38 440 69 HOH HOH . 
F 4 HOH A 39 441 74 HOH HOH . 
F 4 HOH A 40 442 75 HOH HOH . 
F 4 HOH A 41 443 76 HOH HOH . 
F 4 HOH A 42 444 77 HOH HOH . 
F 4 HOH A 43 445 78 HOH HOH . 
F 4 HOH A 44 446 80 HOH HOH . 
F 4 HOH A 45 447 81 HOH HOH . 
F 4 HOH A 46 448 82 HOH HOH . 
F 4 HOH A 47 449 83 HOH HOH . 
F 4 HOH A 48 450 84 HOH HOH . 
F 4 HOH A 49 451 85 HOH HOH . 
F 4 HOH A 50 452 86 HOH HOH . 
F 4 HOH A 51 453 87 HOH HOH . 
F 4 HOH A 52 454 88 HOH HOH . 
F 4 HOH A 53 455 89 HOH HOH . 
F 4 HOH A 54 456 90 HOH HOH . 
F 4 HOH A 55 457 91 HOH HOH . 
F 4 HOH A 56 458 93 HOH HOH . 
F 4 HOH A 57 459 97 HOH HOH . 
F 4 HOH A 58 460 102 HOH HOH . 
F 4 HOH A 59 461 107 HOH HOH . 
F 4 HOH A 60 462 108 HOH HOH . 
F 4 HOH A 61 463 111 HOH HOH . 
G 4 HOH B 1 402 2 HOH HOH . 
G 4 HOH B 2 403 4 HOH HOH . 
G 4 HOH B 3 404 5 HOH HOH . 
G 4 HOH B 4 405 6 HOH HOH . 
G 4 HOH B 5 406 8 HOH HOH . 
G 4 HOH B 6 407 12 HOH HOH . 
G 4 HOH B 7 408 14 HOH HOH . 
G 4 HOH B 8 409 15 HOH HOH . 
G 4 HOH B 9 410 17 HOH HOH . 
G 4 HOH B 10 411 18 HOH HOH . 
G 4 HOH B 11 412 19 HOH HOH . 
G 4 HOH B 12 413 21 HOH HOH . 
G 4 HOH B 13 414 22 HOH HOH . 
G 4 HOH B 14 415 31 HOH HOH . 
G 4 HOH B 15 416 33 HOH HOH . 
G 4 HOH B 16 417 34 HOH HOH . 
G 4 HOH B 17 418 44 HOH HOH . 
G 4 HOH B 18 419 45 HOH HOH . 
G 4 HOH B 19 420 55 HOH HOH . 
G 4 HOH B 20 421 56 HOH HOH . 
G 4 HOH B 21 422 57 HOH HOH . 
G 4 HOH B 22 423 58 HOH HOH . 
G 4 HOH B 23 424 59 HOH HOH . 
G 4 HOH B 24 425 60 HOH HOH . 
G 4 HOH B 25 426 61 HOH HOH . 
G 4 HOH B 26 427 62 HOH HOH . 
G 4 HOH B 27 428 63 HOH HOH . 
G 4 HOH B 28 429 64 HOH HOH . 
G 4 HOH B 29 430 65 HOH HOH . 
G 4 HOH B 30 431 66 HOH HOH . 
G 4 HOH B 31 432 67 HOH HOH . 
G 4 HOH B 32 433 70 HOH HOH . 
G 4 HOH B 33 434 71 HOH HOH . 
G 4 HOH B 34 435 72 HOH HOH . 
G 4 HOH B 35 436 73 HOH HOH . 
G 4 HOH B 36 437 79 HOH HOH . 
G 4 HOH B 37 438 92 HOH HOH . 
G 4 HOH B 38 439 94 HOH HOH . 
G 4 HOH B 39 440 95 HOH HOH . 
G 4 HOH B 40 441 96 HOH HOH . 
G 4 HOH B 41 442 98 HOH HOH . 
G 4 HOH B 42 443 99 HOH HOH . 
G 4 HOH B 43 444 100 HOH HOH . 
G 4 HOH B 44 445 101 HOH HOH . 
G 4 HOH B 45 446 103 HOH HOH . 
G 4 HOH B 46 447 104 HOH HOH . 
G 4 HOH B 47 448 105 HOH HOH . 
G 4 HOH B 48 449 106 HOH HOH . 
G 4 HOH B 49 450 109 HOH HOH . 
G 4 HOH B 50 451 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               25.267 
_atom_site.Cartn_y               -0.645 
_atom_site.Cartn_z               38.44 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        101.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#